CmUC10G194910.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC10G194910.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr10: 26358960 .. 26359187 (+)
Sequence length	228
RNA-Seq Expression	CmUC10G194910.1
Synteny	CmUC10G194910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACCGACTTTCTTTACCCTCGTCTGCCGTCGTCCGACGTCGTCCCCGACAACATCGTCGTCTCCGTCGTTCCTCCCAAACCCGACGATCCAGCTGCGAAGCCCAAGGGACCGATCCACCACCAAACCTTCCTGCAAGCCAATAAGAAGGCTGTTGTTGAACCTATTGTCTCTCGGAGCCCCAAAAAGTCCAATTTCTAG

mRNA sequence

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACCGACTTTCTTTACCCTCGTCTGCCGTCGTCCGACGTCGTCCCCGACAACATCGTCGTCTCCGTCGTTCCTCCCAAACCCGACGATCCAGCTGCGAAGCCCAAGGGACCGATCCACCACCAAACCTTCCTGCAAGCCAATAAGAAGGCTGTTGTTGAACCTATTGTCTCTCGGAGCCCCAAAAAGTCCAATTTCTAG

Coding sequence (CDS)

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACCGACTTTCTTTACCCTCGTCTGCCGTCGTCCGACGTCGTCCCCGACAACATCGTCGTCTCCGTCGTTCCTCCCAAACCCGACGATCCAGCTGCGAAGCCCAAGGGACCGATCCACCACCAAACCTTCCTGCAAGCCAATAAGAAGGCTGTTGTTGAACCTATTGTCTCTCGGAGCCCCAAAAAGTCCAATTTCTAG

Protein sequence

MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKAVVEPIVSRSPKKSNF

Homology

[Close]

BLAST of CmUC10G194910.1 vs. NCBI nr
Match: KAA0057217.1 (hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 55/77 (71.43%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKGP    T  +A    
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGP-KSLTNNKAGVVV 60

Query: 61 VVEPIV-SRS-PKKSNF 76
          VVEPIV SR+ PK SNF
Sbjct: 61 VVEPIVISRNIPKSSNF 76

[Close]

BLAST of CmUC10G194910.1 vs. NCBI nr
Match: KGN59725.1 (hypothetical protein Csa_002570 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKG IH       NK A
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTN----NKAA 60

Query: 61 V-VEPIV--SRSPKKSNF 76
          V VEPIV    +PK S F
Sbjct: 61 VAVEPIVISRNNPKNSTF 74

[Close]

BLAST of CmUC10G194910.1 vs. NCBI nr
Match: KAG6581666.1 (putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-11
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 4   LQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKAVVE 63
           LQYKFFPTDFLYPR PSSDV  DNI VSVVPPK DD +A  KG +H      AN K  V+
Sbjct: 507 LQYKFFPTDFLYPRPPSSDVA-DNI-VSVVPPKSDDSSANSKGRLH------ANNKPAVQ 566

Query: 64  PIVSRSPKKSN 75
           PIV+ +P  SN
Sbjct: 567 PIVAPAPNPSN 569

[Close]

BLAST of CmUC10G194910.1 vs. ExPASy TrEMBL
Match: A0A5A7URF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00510 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.4e-16
Identity = 55/77 (71.43%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKGP    T  +A    
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGP-KSLTNNKAGVVV 60

Query: 61 VVEPIV-SRS-PKKSNF 76
          VVEPIV SR+ PK SNF
Sbjct: 61 VVEPIVISRNIPKSSNF 76

[Close]

BLAST of CmUC10G194910.1 vs. ExPASy TrEMBL
Match: A0A0A0LCI2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKG IH       NK A
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTN----NKAA 60

Query: 61 V-VEPIV--SRSPKKSNF 76
          V VEPIV    +PK S F
Sbjct: 61 VAVEPIVISRNNPKNSTF 74

The following BLAST results are available for this feature:

BLAST of CmUC10G194910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057217.1	1.7e-15	71.43	hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa]	[more]
KGN59725.1	3.0e-15	69.23	hypothetical protein Csa_002570 [Cucumis sativus]	[more]
KAG6581666.1	7.6e-11	63.38	putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of CmUC10G194910.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC10G194910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URF0	8.4e-16	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LCI2	1.4e-15	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1	[more]

BLAST of CmUC10G194910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC10G194910	CmUC10G194910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G194910.1-exon	CmUC10G194910.1-exon-CmU531Chr10:26358960..26359187	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G194910.1-cds	CmUC10G194910.1-cds-CmU531Chr10:26358960..26359187	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC10G194910.1	CmUC10G194910.1-protein	polypeptide