CmUC10G191100.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC10G191100.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ribonuclease H
Location	CmU531Chr10: 20508245 .. 20510636 (-)
Sequence length	1374
RNA-Seq Expression	CmUC10G191100.1
Synteny	CmUC10G191100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGTAGAGTTAACCATGGTAACACGAGTCAGTGGTCACATCCAAATGTTGGAGTTCCTCATTACCCTCAGAATTATTATGCACCGCCTCATTCATACTATCAACTTCAGGTAAATCATGCAACGGTTCAATATTATCCCTCCCCTCCTCAAAATCAACATCCTTATGTGAATCAGAGGTACCAACCTCAAGGTCAACAAAATTCTTATGCTCGAGGACAAGATAATAAAGGGGGTCGTAAACAAGCGCAATTTGATCTGATCCCAATGATTTACACAATGCTTCTACCATGACTATTCCAGAGTAATTAGTTAGCACGTGTACCAATAGATCCAATGCAGCTCCTTATCCTAAGTGGTATGACCCAAATGCTCGGTGTGATTATCATGCGGGAGCCATTGGCCATTCAACGGAAAATTGTGCCGTGCTTAAGTACAAGGTGCAAGCATTGATCAAAGCAGGATGGCTGAATTTTAAGAAGGACAATGTACCTGACATGAATAACAACCCTCTTCCAAACCACCAGAATCCGCAAGTAAATGTTGTAGATGCACAAGAGTTTGGATGTAAGGATGTCATGAGCATAATGATGTCTAAAGAAGAGCTTTTTCAAGTTTTGTTTAGCAATGGATTAATCAAACAAGAGAATTTGCAAGGTGATGTATGTGATACACAACGTAATGACAATCTAATGTGTTTATATCATGCTGGGGTAAAAGGTCATTCTATTGATCAGTGCCCTCATTTCTCCCAAAAGGTATAAGAGTTATTAGATTCTTGTTTCTTAATAGTCTTACAGAAGACAATTAAAGAATCAGAGCGCAGGCATGAAATACATGTTGCAGAAGAGCTCTAAGCAGGCAAATTCTCGAAGGTTTCTCTAAAACGAAAACCATTGACGATATTTTACAAGGAGAAACCTAATACCACCACTTCCAATTCAAAACCAATTACCATACAAGTTCCATCTTTTTTTGAGTATAAAAGCTCAAAAGCAGTACCATGGAATTATGAGTACAAGGTAATTGTTGAGTCTAGACCTATCCCTATAGACAATATTAATGAAATTGGAGGTATAACACAAAGTGAAAGGTGTTATATGCCAGAGGAACTATTGAAACACAAAGGCAAGGATAAAGAAAAAGCTAAGATAAGTGATGCTATTGACTATAAGGTAGAGGAACCCGTGGTGGTGAGAAGTCAAGAAGCAAAAGAGCCAGCATCTAAAGATGACATACAAGAGTTTTTAAGACTCTAAAGCAGAGCGATTATAAAGTAATTGAACAATTGGGCATAACGCCTGCTAGAATCTCCATTTTAGCCTTATTGTTATCTTCAGACCTACATTGCAAAACTCTAATGAATATCTTGAACCAGACTTTTATTCCATCAGACATTACAACAGACAATCTAGACAAGATCGTTGGAAACATAACAGCATCAAGTTTCATAACCTTCACTGATGATGAGATACCACCAGAAGGCACATGTCACACAAAAGCCTTGCATCTTACAGTTAAGTGCAAGAAATTTGCTGTGGCGAAAGTCCTGATTGATAATGGATTGTCTCTAAATATAATGCCCATTTCCACATTGGAAAAATTGCCTATTGATATGTCACATCTCAGACCAAGCACCATGATAGTAAGAGCTTTTGATGGATAATGCATTGAAGTGGTTGGGGACATAGAAATTACTATTCAAATAGGCTCTTGCACCTTTGACATAACTTTTCAAGTCATCAACATCAACTCAGCTTACATTTTCCTACTAGGTCGTCCATAGATTCATTCAGCTGGAGTGGTCCCATCATCATTGCACCAACGACTTACATTTGTAGTTAATCACAAACTGGTGATTGTATCTGGATAAGAAGATATTTTTGTTTCAAGACCATCCTCAATGCCATACATCGAAGCAGTAGAAGAAGCTTTTGAATCCTCATTTCAATCTTTTGAGGTTGCAAATGCCACTACTGTATACGGAAAGATGGGAAATAAGAGGTCATCATTTTCAAAGCTATCTTTAAAGGGAAACAACAAAGGTTTAGATGACTTACTGAGGGTGTCAAAAAATTTGAAAAGATTCGGTTTGGGTTATAGACCAAGTATGGAAGAAGTGGAAAAGCACGAAAATGGGAGACGGAAAGTCGAATAGCGAGGTTTAAGTGTTGCGAGACTCGGCCAAACAAGCAATATTTCCCATCTTTATGAATCCTTCAAGTCTGCTGGCAAAATTCATCCAGAAAGTCAAGATTTTGAAGCAATGGTTGTCGTAGAAGATAGAGACGAAGTGGATCCTCTTGTCTACTTGTGCCCAGAGAACTTTGAGTTGAATAATTGGACTGTATTGGAGCTTCCATCAATTGTTAACAATTTATCAAAGTAA

mRNA sequence

ATGGTAAGTAGAGTTAACCATGGTAACACGAGTCAGTGGTCACATCCAAATGTTGGAGTTCCTCATTACCCTCAGAATTATTATGCACCGCCTCATTCATACTATCAACTTCAGGTAAATCATGCAACGGTTCAATATTATCCCTCCCCTCCTCAAAATCAACATCCTTATGTGAATCAGAGGTACCAACCTCAAGCTCCTTATCCTAAGTGGTATGACCCAAATGCTCGGTGTGATTATCATGCGGGAGCCATTGGCCATTCAACGGAAAATTGTGCCGTGCTTAAGTACAAGGTGCAAGCATTGATCAAAGCAGGATGGCTGAATTTTAAGAAGGACAATGTACCTGACATGAATAACAACCCTCTTCCAAACCACCAGAATCCGCAAGTAAATGTTGTAGATGCACAAGAGTTTGGATGTAAGGATGTCATGAGCATAATGATGTCTAAAGAAGAGCTTTTTCAAGTTTTGTTTAGCAATGGATTAATCAAACAAGAGAATTTGCAAGGTGATGTATGTGATACACAACGTAATGACAATCTAATGTGTTTATATCATGCTGGGGTAAAAGGTCATTCTATTGATCAGTGCCCTCATTTCTCCCAAAAGAAGAGCTCTAAGCAGGCAAATTCTCGAAGCTCAAAAGCAGTACCATGGAATTATGAGTACAAGGTAATTGTTGAGTCTAGACCTATCCCTATAGACAATATTAATGAAATTGGAGGTATAACACAAAGTGAAAGGTGTTATATGCCAGAGGAACTATTGAAACACAAAGGCAAGGATAAAGAAAAAGCTAAGATAAGTGATGCTATTGACTATAAGAGCGATTATAAAGTAATTGAACAATTGGGCATAACGCCTGCTAGAATCTCCATTTTAGCCTTATTGTTATCTTCAGACCTACATTGCAAAACTCTAATGAATATCTTGAACCAGACTTTTATTCCATCAGACATTACAACAGACAATCTAGACAAGATCGTTGGAAACATAACAGCATCAAGTTTCATAACCTTCACTGATGATGAGATACCACCAGAAGGCACATGTCACACAAAAGCCTTGCATCTTACAGTTAAGTGCAAGAAATTTGCTGTGGCGAAAGTCCTGATTGATAATGGATTGTCTCTAAATATAATGCCCATTTCCACATTGGAAAAATTGCCTATTGATATGTCACATCTCAGACCAAGCACCATGATATCTGCTGGCAAAATTCATCCAGAAAGTCAAGATTTTGAAGCAATGGTTGTCGTAGAAGATAGAGACGAAGTGGATCCTCTTGTCTACTTGTGCCCAGAGAACTTTGAGTTGAATAATTGGACTGTATTGGAGCTTCCATCAATTGTTAACAATTTATCAAAGTAA

Coding sequence (CDS)

ATGGTAAGTAGAGTTAACCATGGTAACACGAGTCAGTGGTCACATCCAAATGTTGGAGTTCCTCATTACCCTCAGAATTATTATGCACCGCCTCATTCATACTATCAACTTCAGGTAAATCATGCAACGGTTCAATATTATCCCTCCCCTCCTCAAAATCAACATCCTTATGTGAATCAGAGGTACCAACCTCAAGCTCCTTATCCTAAGTGGTATGACCCAAATGCTCGGTGTGATTATCATGCGGGAGCCATTGGCCATTCAACGGAAAATTGTGCCGTGCTTAAGTACAAGGTGCAAGCATTGATCAAAGCAGGATGGCTGAATTTTAAGAAGGACAATGTACCTGACATGAATAACAACCCTCTTCCAAACCACCAGAATCCGCAAGTAAATGTTGTAGATGCACAAGAGTTTGGATGTAAGGATGTCATGAGCATAATGATGTCTAAAGAAGAGCTTTTTCAAGTTTTGTTTAGCAATGGATTAATCAAACAAGAGAATTTGCAAGGTGATGTATGTGATACACAACGTAATGACAATCTAATGTGTTTATATCATGCTGGGGTAAAAGGTCATTCTATTGATCAGTGCCCTCATTTCTCCCAAAAGAAGAGCTCTAAGCAGGCAAATTCTCGAAGCTCAAAAGCAGTACCATGGAATTATGAGTACAAGGTAATTGTTGAGTCTAGACCTATCCCTATAGACAATATTAATGAAATTGGAGGTATAACACAAAGTGAAAGGTGTTATATGCCAGAGGAACTATTGAAACACAAAGGCAAGGATAAAGAAAAAGCTAAGATAAGTGATGCTATTGACTATAAGAGCGATTATAAAGTAATTGAACAATTGGGCATAACGCCTGCTAGAATCTCCATTTTAGCCTTATTGTTATCTTCAGACCTACATTGCAAAACTCTAATGAATATCTTGAACCAGACTTTTATTCCATCAGACATTACAACAGACAATCTAGACAAGATCGTTGGAAACATAACAGCATCAAGTTTCATAACCTTCACTGATGATGAGATACCACCAGAAGGCACATGTCACACAAAAGCCTTGCATCTTACAGTTAAGTGCAAGAAATTTGCTGTGGCGAAAGTCCTGATTGATAATGGATTGTCTCTAAATATAATGCCCATTTCCACATTGGAAAAATTGCCTATTGATATGTCACATCTCAGACCAAGCACCATGATATCTGCTGGCAAAATTCATCCAGAAAGTCAAGATTTTGAAGCAATGGTTGTCGTAGAAGATAGAGACGAAGTGGATCCTCTTGTCTACTTGTGCCCAGAGAACTTTGAGTTGAATAATTGGACTGTATTGGAGCTTCCATCAATTGTTAACAATTTATCAAAGTAA

Protein sequence

MVSRVNHGNTSQWSHPNVGVPHYPQNYYAPPHSYYQLQVNHATVQYYPSPPQNQHPYVNQRYQPQAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVPDMNNNPLPNHQNPQVNVVDAQEFGCKDVMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQRNDNLMCLYHAGVKGHSIDQCPHFSQKKSSKQANSRSSKAVPWNYEYKVIVESRPIPIDNINEIGGITQSERCYMPEELLKHKGKDKEKAKISDAIDYKSDYKVIEQLGITPARISILALLLSSDLHCKTLMNILNQTFIPSDITTDNLDKIVGNITASSFITFTDDEIPPEGTCHTKALHLTVKCKKFAVAKVLIDNGLSLNIMPISTLEKLPIDMSHLRPSTMISAGKIHPESQDFEAMVVVEDRDEVDPLVYLCPENFELNNWTVLELPSIVNNLSK

Homology

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BLAST of CmUC10G191100.1 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 354.0 bits (907), Expect = 2.0e-93
Identity = 230/582 (39.52%), Postives = 284/582 (48.80%), Query Frame = 0


Query: 2   VSRVNHGNTSQWSHPNVGVPHYPQNYYAPPHSYYQLQVNHATVQYYPSPPQNQHPYVNQR 61
           V  V     S    P    P Y   YY  P+ Y Q  VN+AT  Y P   QN  P  +Q 
Sbjct: 252 VQMVGADRHSWKQQPYSRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYTFQNFRPPASQN 311

Query: 62  YQP--------------------------------------------------------- 121
           +QP                                                         
Sbjct: 312 FQPTPASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPV 371

Query: 122 -----QAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVPDMN 181
                Q PYP+WYD NARCDYHAGAIGHSTENC  LKY+VQALIKAGWLNFKK+N PD++
Sbjct: 372 PVDPIQPPYPRWYDTNARCDYHAGAIGHSTENCTALKYRVQALIKAGWLNFKKENGPDVS 431

Query: 182 NNPLPNHQNPQVNVVDAQEFGCKD-VMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQR 241
            NPLPNHQN Q+N ++ QE   K  V  I     ELF++L  +G +  E L  ++     
Sbjct: 432 KNPLPNHQNVQINAIECQEIESKSKVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKGY 491

Query: 242 NDNLMCLYHAGVKGHSIDQCPHFSQK-------KSSKQANS------------------- 301
           +++L C +HAG KGHS++QC  F  K       K    ANS                   
Sbjct: 492 DESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINIVEDVSVAEGSS 551

Query: 302 ------------------------------------RSSKAVPWNYEYKVI----VESRP 361
                                               +SSKAVPW Y+ KV     V S P
Sbjct: 552 DALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPP 611

Query: 362 IPIDNINEIGGITQSERCYMPEELL-----------KHKGKDKEKAKIS----------- 404
           +PIDNI  +GG+T++ RCY P+ LL           K K  +K+K K+            
Sbjct: 612 LPIDNITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHE 671

[Close]

BLAST of CmUC10G191100.1 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-92
Identity = 207/462 (44.81%), Postives = 257/462 (55.63%), Query Frame = 0


Query: 65  QAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVPDMNNNPLP 124
           Q PYP+W D NARCDYH GAIGHS ENC  LKY+VQALIKAGWLNFKK+N P+++NNPLP
Sbjct: 312 QPPYPRWCDANARCDYHTGAIGHSIENCTALKYRVQALIKAGWLNFKKENGPBVSNNPLP 371

Query: 125 NHQNPQVNVVDAQEFGCKD-VMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQRNDNLM 184
           NH N Q+N ++ QE   K  V  I    EELF++L  +G +  E L  ++     +++L 
Sbjct: 372 NHXNVQINAIECQEIESKSKVADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLT 431

Query: 185 CLYHAGVKGHSIDQCPHF------------------SQKK-------------SSKQANS 244
           C +HAG KGH+++QC  F                   QKK             S  + +S
Sbjct: 432 CPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVAEGSIAEGSS 491

Query: 245 ------------------------------------RSSKAVPWNYEYKVI----VESRP 304
                                               +SSKAVPW YE KV     V S P
Sbjct: 492 DALKPKRLTIFYSEKPDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPP 551

Query: 305 IPIDNINEIGGITQSERCYMPEELL-----------KHKGKDKEKAKIS----------- 364
           +P+DNI  +GG+T + RCY P+ LL           K K  +K+K K+            
Sbjct: 552 LPVDNITGVGGLTXTGRCYTPDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKGKAKLHE 611

Query: 365 -------DAIDYK----------------------SDYKVIEQLGITPARISILALLLSS 404
                  +AI  K                      S+YKV EQLG TPA+ISIL+LLLSS
Sbjct: 612 DVHDELVEAIVVKDVSPKQHVFEEEIQEFLKLVKQSEYKVTEQLGRTPAKISILSLLLSS 671

[Close]

BLAST of CmUC10G191100.1 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 333.2 bits (853), Expect = 3.6e-87
Identity = 226/584 (38.70%), Postives = 275/584 (47.09%), Query Frame = 0


Query: 2   VSRVNHGNTSQWSHPNVGVPHYPQNYYAPPHSYYQLQVNHATVQYYPSPPQNQHPYVNQR 61
           V  V     S    P    P Y   YY  P+ Y Q  VN+AT  YYP   QN  P  +Q 
Sbjct: 292 VQMVGADRHSWKQQPYRRTPQYSPYYYPTPYGYNQPFVNNATSHYYPYASQNFRPPASQN 351

Query: 62  YQ---------------------------------------------------------- 121
           +Q                                                          
Sbjct: 352 FQLTPTSQNFQPRGQQHNTFYTQGQQNNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPV 411

Query: 122 ----PQAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVPDMN 181
                Q PYP+WYD NARCDYHAGAI HSTENC  LKY+VQALIKAGW NFKK+N  D++
Sbjct: 412 PVDPIQPPYPRWYDANARCDYHAGAIXHSTENCTXLKYRVQALIKAGWXNFKKENGXDVS 471

Query: 182 NNPLPNHQNPQVNVVDAQEFGCKD-VMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQR 241
              L NHQN Q+N ++ Q    K  V  I     ELF++L  +G I  E L    C   +
Sbjct: 472 KXXLXNHQNVQINAIECQGIESKSKVABITTPMXELFEILLGSGYISVEYL----CPKYK 531

Query: 242 --NDNLMCLYHAGVKGHSIDQCPHFSQK-------KSSKQANS----------------- 301
             +++L C +H G KGHS++QC  F  K       K    ANS                 
Sbjct: 532 GYDESLTCXFHXGAKGHSLEQCNXFRMKVQELLDSKILTXANSHXKKXTNVVEDILVAEG 591

Query: 302 --------------------------------------RSSKAVPWNYEYKVI----VES 361
                                                 +SSKAVPW YE KV     V S
Sbjct: 592 SSDSLKPKPLTIFYREKPDAPSCSRKPXXITVPXPFEYKSSKAVPWKYECKVTVGQDVSS 651

Query: 362 RPIPIDNINEIGGITQSERCYMPEELL-----------KHKGKDKEKAKI---------- 404
             +P+DNI  +GG+T++ RCY P+ LL           K K  +K+K K+          
Sbjct: 652 PSLPVDNITGVGGLTRTGRCYTPDSLLKRVNETTSEKNKEKASEKKKEKVEEDKKGKAKL 711

[Close]

BLAST of CmUC10G191100.1 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-06
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 404  SAGKIHPESQDFEAM-VVVEDRDEVDPLVYLCPENFELNNWTVLELPSIVNNLS 457
            SAG IH E  +   +  V E+R++V P VYLCP+ FEL+NW+V++LPS VNN S
Sbjct: 1066 SAGTIHQEYDESSVVAAVTEEREQVGPFVYLCPDGFELSNWSVIKLPSFVNNKS 1119

HSP 2 Score: 298.5 bits (763), Expect = 9.8e-77
Identity = 178/444 (40.09%), Postives = 245/444 (55.18%), Query Frame = 0


Query: 67  PYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKD-NVPDMNNNPLPN 126
           PYPKW+D NARCDYHAG +GHSTENC  LK KVQ+LI AGWL+FKK    P++N NPL +
Sbjct: 354 PYPKWFDSNARCDYHAGGVGHSTENCLALKRKVQSLINAGWLSFKKSGEKPNVNENPLSD 413

Query: 127 HQNPQVNVVDAQEFGCK-DVMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQRNDNLMC 186
           H+NP+VNVVD+    CK +V  I+M  E LF+ LF  G +  E L  ++     +++  C
Sbjct: 414 HENPKVNVVDSLVEKCKSEVHEIVMPMEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHC 473

Query: 187 LYHAGVKGHSIDQCPHF------------------------------------SQKKSS- 246
           ++H GV GH + QC  F                                    S+KK S 
Sbjct: 474 IFHQGVAGHVVQQCQKFRSKVQQLMDSKILTVYRGQGKDEMKDSKICALMDEVSEKKDSF 533

Query: 247 ---------KQANSRSS---------------------KAVPWNYEYKVIVESRPIPIDN 306
                    +++++ S+                     KAVPW Y+ +VI       +DN
Sbjct: 534 LPRPLTVFYQESHNESTSFCNLKKLTIQVPSPFKFKDLKAVPWWYDCQVITGP---SVDN 593

Query: 307 INEIGGITQSERCYMPEE-------LLKHKGKDKEKAKISD--------------AIDYK 366
           I  I GIT+S RCY P+        L+  +G+  EK  + +               I+YK
Sbjct: 594 ITGISGITRSGRCYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPIIAKDIEYK 653

Query: 367 -----------------SDYKVIEQLGITPARISILALLLSSDLHCKTLMNILNQTFIPS 404
                            S+YK+IEQ+  TPARIS+L+L L+S+ H K L++ILN+  +  
Sbjct: 654 KLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGH 713

[Close]

BLAST of CmUC10G191100.1 vs. NCBI nr
Match: XP_031737561.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 3.1e-75
Identity = 197/510 (38.63%), Postives = 259/510 (50.78%), Query Frame = 0


Query: 20  VPHYPQNYYAPPHS---------------YYQLQ---VNHATVQYYPSP-------PQNQ 79
           V H P N Y P HS               + Q Q    N  T ++ P P       PQ  
Sbjct: 368 VTHIPYNNYVPTHSPSGAPKLVNSNFSRPFVQGQGSKTNSETFRFDPIPMTYTELLPQLV 427

Query: 80  HPYVNQRYQP------QAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWL 139
           H   N++  P      Q PYPKWYDPNARCDYHAG +GHSTENC  LK KVQ+LI AGWL
Sbjct: 428 H---NRQLAPIPINPIQPPYPKWYDPNARCDYHAGGVGHSTENCLALKRKVQSLINAGWL 487

Query: 140 NFKK-DNVPDMNNNPLPNHQNPQVNVVDAQEFGCK-DVMSIMMSKEELFQVLFSNGLIKQ 199
           +FKK    PD+NNNPLPNH+N +VN +D     CK +V  I M  E LF+ LF  G +  
Sbjct: 488 SFKKAGEKPDVNNNPLPNHENSKVNAIDCFVGKCKNEVHEIKMPMETLFEGLFEAGYVSL 547

Query: 200 ENLQGDVCDTQRNDNLMCLYHAGVKGHSIDQCPHFSQK---------------------K 259
           E L  ++     ++   C++H GV GH I +C  F  K                     K
Sbjct: 548 EYLDPNIRYEGYDEGKRCIFHQGVAGHPIQRCCTFRSKVQQFMDSKILTVYEGQGKDEMK 607

Query: 260 SSK------------------------QANSRSS---------------------KAVPW 319
            +K                        Q N   S                     KAVPW
Sbjct: 608 DNKICTLMGEVAKKENPFLPRPLTVFYQENRNKSSSCNPKQLIVEVPSPFKFKDLKAVPW 667

Query: 320 NYEYKVIVESRPIPIDNINEIGGITQSERCYMPEELLK-------HKGKDKEKAKISD-- 379
            Y+ +VI       +DNI  I GIT+S RCY P+ L          +G+  EK  +++  
Sbjct: 668 RYDCQVITGP---SVDNITGISGITRSGRCYKPDNLTAPSSSLTLGQGRKSEKRNVNEHD 727

Query: 380 ------------------AIDYKSDYKVIEQLGITPARISILALLLSSDLHCKTLMNILN 404
                              I  +S+YK+IEQ+  TPARIS+L+L L+S+ H K L++ILN
Sbjct: 728 KEHDVEMSVTDEAANEFLKIVKQSEYKIIEQMHNTPARISLLSLFLNSEPHRKVLLDILN 787

[Close]

BLAST of CmUC10G191100.1 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 9.5e-94
Identity = 230/582 (39.52%), Postives = 284/582 (48.80%), Query Frame = 0


Query: 2   VSRVNHGNTSQWSHPNVGVPHYPQNYYAPPHSYYQLQVNHATVQYYPSPPQNQHPYVNQR 61
           V  V     S    P    P Y   YY  P+ Y Q  VN+AT  Y P   QN  P  +Q 
Sbjct: 252 VQMVGADRHSWKQQPYSRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYTFQNFRPPASQN 311

Query: 62  YQP--------------------------------------------------------- 121
           +QP                                                         
Sbjct: 312 FQPTPASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPV 371

Query: 122 -----QAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVPDMN 181
                Q PYP+WYD NARCDYHAGAIGHSTENC  LKY+VQALIKAGWLNFKK+N PD++
Sbjct: 372 PVDPIQPPYPRWYDTNARCDYHAGAIGHSTENCTALKYRVQALIKAGWLNFKKENGPDVS 431

Query: 182 NNPLPNHQNPQVNVVDAQEFGCKD-VMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQR 241
            NPLPNHQN Q+N ++ QE   K  V  I     ELF++L  +G +  E L  ++     
Sbjct: 432 KNPLPNHQNVQINAIECQEIESKSKVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKGY 491

Query: 242 NDNLMCLYHAGVKGHSIDQCPHFSQK-------KSSKQANS------------------- 301
           +++L C +HAG KGHS++QC  F  K       K    ANS                   
Sbjct: 492 DESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINIVEDVSVAEGSS 551

Query: 302 ------------------------------------RSSKAVPWNYEYKVI----VESRP 361
                                               +SSKAVPW Y+ KV     V S P
Sbjct: 552 DALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPP 611

Query: 362 IPIDNINEIGGITQSERCYMPEELL-----------KHKGKDKEKAKIS----------- 404
           +PIDNI  +GG+T++ RCY P+ LL           K K  +K+K K+            
Sbjct: 612 LPIDNITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHE 671

[Close]

BLAST of CmUC10G191100.1 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 6.1e-93
Identity = 208/462 (45.02%), Postives = 257/462 (55.63%), Query Frame = 0


Query: 65  QAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVPDMNNNPLP 124
           Q PYP+W D NARCDYH GAIGHS ENC  LKY+VQALIKAGWLNFKK+N PD++NNPLP
Sbjct: 312 QPPYPRWCDANARCDYHTGAIGHSIENCTALKYRVQALIKAGWLNFKKENGPDVSNNPLP 371

Query: 125 NHQNPQVNVVDAQEFGCKD-VMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQRNDNLM 184
           NH N Q+N ++ QE   K  V  I    EELF++L  +G +  E L  ++     +++L 
Sbjct: 372 NHXNVQINAIECQEIESKSKVADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLT 431

Query: 185 CLYHAGVKGHSIDQCPHF------------------SQKK-------------SSKQANS 244
           C +HAG KGH+++QC  F                   QKK             S  + +S
Sbjct: 432 CPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVAEGSIAEGSS 491

Query: 245 ------------------------------------RSSKAVPWNYEYKVI----VESRP 304
                                               +SSKAVPW YE KV     V S P
Sbjct: 492 DALKPKRLTIFYSEKPDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPP 551

Query: 305 IPIDNINEIGGITQSERCYMPEELL-----------KHKGKDKEKAKIS----------- 364
           +P+DNI  +GG+T + RCY P+ LL           K K  +K+K K+            
Sbjct: 552 LPVDNITGVGGLTXTGRCYTPDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKGKAKLHE 611

Query: 365 -------DAIDYK----------------------SDYKVIEQLGITPARISILALLLSS 404
                  +AI  K                      S+YKV EQLG TPA+ISIL+LLLSS
Sbjct: 612 DVHDELVEAIVVKDVSPKQHVFEEEIQEFLKLVKQSEYKVTEQLGRTPAKISILSLLLSS 671

[Close]

BLAST of CmUC10G191100.1 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.7e-87
Identity = 226/584 (38.70%), Postives = 275/584 (47.09%), Query Frame = 0


Query: 2   VSRVNHGNTSQWSHPNVGVPHYPQNYYAPPHSYYQLQVNHATVQYYPSPPQNQHPYVNQR 61
           V  V     S    P    P Y   YY  P+ Y Q  VN+AT  YYP   QN  P  +Q 
Sbjct: 292 VQMVGADRHSWKQQPYRRTPQYSPYYYPTPYGYNQPFVNNATSHYYPYASQNFRPPASQN 351

Query: 62  YQ---------------------------------------------------------- 121
           +Q                                                          
Sbjct: 352 FQLTPTSQNFQPRGQQHNTFYTQGQQNNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPV 411

Query: 122 ----PQAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVPDMN 181
                Q PYP+WYD NARCDYHAGAI HSTENC  LKY+VQALIKAGW NFKK+N  D++
Sbjct: 412 PVDPIQPPYPRWYDANARCDYHAGAIXHSTENCTXLKYRVQALIKAGWXNFKKENGXDVS 471

Query: 182 NNPLPNHQNPQVNVVDAQEFGCKD-VMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQR 241
              L NHQN Q+N ++ Q    K  V  I     ELF++L  +G I  E L    C   +
Sbjct: 472 KXXLXNHQNVQINAIECQGIESKSKVADITTPMXELFEILLGSGYISVEYL----CPKYK 531

Query: 242 --NDNLMCLYHAGVKGHSIDQCPHFSQK-------KSSKQANS----------------- 301
             +++L C +H G KGHS++QC  F  K       K    ANS                 
Sbjct: 532 GYDESLTCXFHXGAKGHSLEQCNXFRMKVQELLDSKILTXANSHXKKXTNVVEDILVAEG 591

Query: 302 --------------------------------------RSSKAVPWNYEYKVI----VES 361
                                                 +SSKAVPW YE KV     V S
Sbjct: 592 SSDSLKPKPLTIFYREKPDAPSCSRKPXXITVPXPFEYKSSKAVPWKYECKVTVGQDVSS 651

Query: 362 RPIPIDNINEIGGITQSERCYMPEELL-----------KHKGKDKEKAKI---------- 404
             +P+DNI  +GG+T++ RCY P+ LL           K K  +K+K K+          
Sbjct: 652 PSLPVDNITGVGGLTRTGRCYTPDSLLKRVNETTSEKNKEKASEKKKEKVEEDKKGKAKL 711

[Close]

BLAST of CmUC10G191100.1 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-06
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 404  SAGKIHPESQDFEAM-VVVEDRDEVDPLVYLCPENFELNNWTVLELPSIVNNLS 457
            SAG IH E  +   +  V E+R++V P VYLCP+ FEL+NW+V++LPS VNN S
Sbjct: 1066 SAGTIHQEYDESSVVAAVTEEREQVGPFVYLCPDGFELSNWSVIKLPSFVNNKS 1119

HSP 2 Score: 298.5 bits (763), Expect = 4.7e-77
Identity = 178/444 (40.09%), Postives = 245/444 (55.18%), Query Frame = 0


Query: 67  PYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKD-NVPDMNNNPLPN 126
           PYPKW+D NARCDYHAG +GHSTENC  LK KVQ+LI AGWL+FKK    P++N NPL +
Sbjct: 354 PYPKWFDSNARCDYHAGGVGHSTENCLALKRKVQSLINAGWLSFKKSGEKPNVNENPLSD 413

Query: 127 HQNPQVNVVDAQEFGCK-DVMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQRNDNLMC 186
           H+NP+VNVVD+    CK +V  I+M  E LF+ LF  G +  E L  ++     +++  C
Sbjct: 414 HENPKVNVVDSLVEKCKSEVHEIVMPMEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHC 473

Query: 187 LYHAGVKGHSIDQCPHF------------------------------------SQKKSS- 246
           ++H GV GH + QC  F                                    S+KK S 
Sbjct: 474 IFHQGVAGHVVQQCQKFRSKVQQLMDSKILTVYRGQGKDEMKDSKICALMDEVSEKKDSF 533

Query: 247 ---------KQANSRSS---------------------KAVPWNYEYKVIVESRPIPIDN 306
                    +++++ S+                     KAVPW Y+ +VI       +DN
Sbjct: 534 LPRPLTVFYQESHNESTSFCNLKKLTIQVPSPFKFKDLKAVPWWYDCQVITGP---SVDN 593

Query: 307 INEIGGITQSERCYMPEE-------LLKHKGKDKEKAKISD--------------AIDYK 366
           I  I GIT+S RCY P+        L+  +G+  EK  + +               I+YK
Sbjct: 594 ITGISGITRSGRCYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPIIAKDIEYK 653

Query: 367 -----------------SDYKVIEQLGITPARISILALLLSSDLHCKTLMNILNQTFIPS 404
                            S+YK+IEQ+  TPARIS+L+L L+S+ H K L++ILN+  +  
Sbjct: 654 KLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGH 713

[Close]

BLAST of CmUC10G191100.1 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.4e-75
Identity = 177/446 (39.69%), Postives = 239/446 (53.59%), Query Frame = 0


Query: 65  QAPYPKWYDPNARCDYHAGAIGHSTENCAVLKYKVQALIKAGWLNFKKDNVP-DMNNNPL 124
           Q  YPKWYD NARCDYHAG +GHSTENC  LK KVQ+LI  GWL+FKK     ++N NPL
Sbjct: 171 QPSYPKWYDSNARCDYHAGGVGHSTENCLALKRKVQSLINVGWLSFKKSGEKLNVNENPL 230

Query: 125 PNHQNPQVNVVDAQEFGCK-DVMSIMMSKEELFQVLFSNGLIKQENLQGDVCDTQRNDNL 184
           P+H+NP+VNVVD+    CK +V  I+M  E LF+ LF  G +  E L  ++      ++ 
Sbjct: 231 PDHENPKVNVVDSLVEKCKNEVHEIVMPMEALFEGLFEAGYVSHEYLDPNIRYEGYEESR 290

Query: 185 MCLYHAGVKGHSIDQCPHF------------------------------------SQKKS 244
            C+ H GV GH + QC  F                                    S+KK 
Sbjct: 291 HCILHQGVAGHVVQQCQKFRSKVQQFMDSKILTVYRGQEKDEMKDSKMCALMDEVSEKKD 350

Query: 245 S----------KQANSRSS---------------------KAVPWNYEYKVIVESRPIPI 304
           S          +++++ S+                     KAVPW Y+ +VI       +
Sbjct: 351 SFLPRPLTVFYQESHNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQVITGP---SV 410

Query: 305 DNINEIGGITQSERCYMPEE-------LLKHKGKDKEKAKISD--------------AID 364
           DNI  I GIT+S RCY P+        L+  +G+  EK  + +               I+
Sbjct: 411 DNITGISGITRSGRCYKPDNLTVPSDGLILEQGRKNEKRNVKEHCKDQDVEMPIIAKDIE 470

Query: 365 YK-----------------SDYKVIEQLGITPARISILALLLSSDLHCKTLMNILNQTFI 404
           YK                 S+YK+IEQ+  TPARIS+L+L L+S+ H K L++ILN+  +
Sbjct: 471 YKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHV 530

The following BLAST results are available for this feature:

BLAST of CmUC10G191100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158986.1	2.0e-93	39.52	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022143495.1	2.2e-92	44.81	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]
XP_022147189.1	3.6e-87	38.70	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
XP_022147189.1	5.3e-06	53.70	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
XP_031737561.1	3.1e-75	38.63	LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]	[more]

BLAST of CmUC10G191100.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC10G191100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2J7	9.5e-94	39.52	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1CNY7	6.1e-93	45.02	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]
A0A6J1D099	1.7e-87	38.70	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A6J1D099	2.6e-06	53.70	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A5A7T7R4	3.4e-75	39.69	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]

BLAST of CmUC10G191100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33240:SF7	GAG-PRO-LIKE PROTEIN	coord: 86..403
None	No IPR available	PANTHER	PTHR33240	OS08G0508500 PROTEIN	coord: 86..403

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC10G191100	CmUC10G191100	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G191100.1-exon	CmUC10G191100.1-exon-CmU531Chr10:20508245..20508409	exon
CmUC10G191100.1-exon	CmUC10G191100.1-exon-CmU531Chr10:20508989..20509369	exon
CmUC10G191100.1-exon	CmUC10G191100.1-exon-CmU531Chr10:20509459..20509645	exon
CmUC10G191100.1-exon	CmUC10G191100.1-exon-CmU531Chr10:20509759..20509787	exon
CmUC10G191100.1-exon	CmUC10G191100.1-exon-CmU531Chr10:20509876..20510291	exon
CmUC10G191100.1-exon	CmUC10G191100.1-exon-CmU531Chr10:20510441..20510636	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G191100.1-cds	CmUC10G191100.1-cds-CmU531Chr10:20508245..20508409	CDS
CmUC10G191100.1-cds	CmUC10G191100.1-cds-CmU531Chr10:20508989..20509369	CDS
CmUC10G191100.1-cds	CmUC10G191100.1-cds-CmU531Chr10:20509459..20509645	CDS
CmUC10G191100.1-cds	CmUC10G191100.1-cds-CmU531Chr10:20509759..20509787	CDS
CmUC10G191100.1-cds	CmUC10G191100.1-cds-CmU531Chr10:20509876..20510291	CDS
CmUC10G191100.1-cds	CmUC10G191100.1-cds-CmU531Chr10:20510441..20510636	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC10G191100.1	CmUC10G191100.1-protein	polypeptide