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CmUC06G114440.1 (mRNA) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAAGGAAAAGGAGAAAACAGTTAATACAACAGAGAAGATAGATGATGAAGCAATCGTAAATGTTAATGAAGATGAAGAAATCCATGAGAATACAACAAAAAGGCGTAAGAACAATAAAACATCCATAGTTTGGGAACATTTTGAGCATTTGAAAGGTGATCCTAATAACCCTTATGCTAGGTGTAAATATTGTGGAGCTACTTATGCAAGTCATTCAAAGCGTAATGGTAACGGGAAGATGAAAAATCACTTAGATAATTGTAAGAAATACCCATACCAAAGTAAGAGAGATCCAAATCAAAAAACCTTAGCTTTCAAAACTAAAGAAGAAGGTGTTAAGGATGGTCCTTCCCAACTTGTATGCAAATCATTTAGTTTACAAAGTTGTTGTGAGGTTTTTTCTAAAATGATAATCGTAGATGAATTGTATTTCAAGTTTGTAGAGAATAATGGTTTAAGGAATTTGTCAGTAAATTAACATGTTCCCAAGAGCCTAAGTTTGTCCTTCCATCTCGATTCACCATGGCTAGGGATATCCTAAAGATCTATGTTAATGAAAAAAAAAAAAGTTGAAAGACATGTTTGTGAAAATGAAATATAAAGTTTGCCTCACTACTAATTGTTGGACTTCAGGACAAAATATGAACTATATGGTATTGACTGCACATTTTGTTGATTATGATTAGAAGTTACATAAAAGAATTCTTAGCTTTGGGGTTATTGAAAATCATAGAGGGGACACCATTGGTAGGGCTATGGAAAAGAGTTTGAAAGATTGGGGAATTGAAAAGGTCATAACTATAACTGTTAATAATGCTAGTTCGAATGATACTGCTATTGCTTTCATGACTAAGAAATTCACAAAAGGGTTGATATGTAATGGTGAGTATTTGCATGTTAGATGTTCTGCACACATATTAAACCTTATTGAAAATCATAGAGAGAACACCATTGGTAGGGCTATGGAAAAGAGTTTGAAAGATTGGGGAATTGAAAAGGTCATAACTATAACTGTTGATAATGCTAGTTCGAACGATACTGCTATTGCTTTCATGACTAGGAGATTCACAAATGGGTTGATATGTAATGGTGAGTATTTGCATGTTAGATGTTCTACACACATATTAAACCTTATAGTATGTGATGCTTTGAAGGAGCATAATGAGAGCATTAGTAGAATTTGAAACGCTATTAGATATGTGAGATCTTCCCCTGCACGTATGATGAAATTTAAAAAGTGTGTTGAAAATGAAAGAATATCTTGCAATAGTATTGTATGTTTTGATGTTTCCACACGATGAAACTCTACGTATATGATGCTTGAGATGACTATTAAGTTTGCAAGAGCATTTGATAGATTAGAAGATGACGAAGATGCTTATAGAAATGATTCACCACCTACTAAAGAGGATTGGTTAAATGCAAGGATGTTGGTTATATTTTTTAAAGTGTTTTACACTGTCACATTGAAAGTGTCTGGATCTTTGTATACAACTTCAAACTTGGTTTTTCATGAGATATGTAGAATTCAGAATTGCATCCAAAAGAATGCAAATAGTGGAAATAAAATGCTTTCTACTATGGCTAATAATATGAAGGCTAGGTTTGACAAGTATTGGGGAAATGATGACAAGATAAATAATATACAATTGTGCATTGTTGTGATTTTAGATCCTTATTACTAGATGAAGTGCTTAACTTATTGTTGGACATATCTTTTTGGGCCAGACATTACCAAGATTAAGGTTAGAACAGTTGAAAATGTTTTGAGGCATCTTTTCCATGAATCCAACAATTGGCAAACTAGTGGTATTTCTGTTATTTCTAGTGGTAGCTGTAATGCAAGTGTTGGTGTTGCTGTTAATGCAGGGGCTAGTTGTAGTACTAGTTCGTGTGAATCTACTAAAGATCCTAATATTCGTGGTCGTAATTTTTCAACTGTCTTGGATAGCATTATGGATGTGGATTTGGAAGATGATGTGCAAGAGGTAATGGAAAAGAATTATGGATACACATGTGGGTTTCGAACTACTGAGACTATGAGTTTTGATAGGGAGTTAGAGATTGATGTATATTTGTTGGAATCCCTCAAGGAGTGTGCTGATAGTAGTTTTGACATTCTTCGTTGGTGGAAGCAGAATGAGCATAGATTTGTGGTTATTAGTTGTATGAGTAGAGATATTTTGGTCATTCCTATATCTACTGTAGCATCTGAGTTTAATGCAAGTCGTTGCTCATTGGCTCAAAGAATGGTGGAGCCTCTTATATGCACTCAAAATTGGTTAAATTCAGACCCAATCAATTTTGACCTTCATAATCAAGATATTGAAGAAGATTTAAAGTTTGAAGAAGCTATTCAATTTATTATTTAA ATGGAAAAGGAAAAGGAGAAAACAGTTAATACAACAGAGAAGATAGATGATGAAGCAATCGTAAATGTTAATGAAGATGAAGAAATCCATGAGAATACAACAAAAAGGCGTAAGAACAATAAAACATCCATAGTTTGGGAACATTTTGAGCATTTGAAAGGTGATCCTAATAACCCTTATGCTAGGTGTAAATATTGTGGAGCTACTTATGCAAGTCATTCAAAGCGTAATGGTAACGGGAAGATGAAAAATCACTTAGATAATTGTAAGAAATACCCATACCAAAGTAAGAGAGATCCAAATCAAAAAACCTTAGCTTTCAAAACTAAAGAAGAAGGTGTTAAGGATGGTCCTTCCCAACTTAAGTTACATAAAAGAATTCTTAGCTTTGGGGTTATTGAAAATCATAGAGGGGACACCATTGGTAGGGCTATGGAAAAGAGTTTGAAAGATTGGGGAATTGAAAAGGTCATAACTATAACTGTTAATAATGCTAGTTCGAATGATACTGCTATTGCTTTCATGACTAAGAAATTCACAAAAGGGTTGATATGTAATGGTGAGTATTTGCATGTTAGATGTTCTGCACACATATTAAACCTTATTGAAAATCATAGAGAGAACACCATTGGTAGGGCTATGGAAAAGAGTTTGAAAGATTGGGGAATTGAAAAGGTCATAACTATAACTGTTGATAATGCTAGTTCGAACGATACTGCTATTGCTTTCATGACTAGGAGATTCACAAATGGGTTGATATGTAATGACATTACCAAGATTAAGGTTAGAACAGTTGAAAATGTTTTGAGGCATCTTTTCCATGAATCCAACAATTGGCAAACTAGTGGTATTTCTGTTATTTCTAGTGGTAGCTGTAATGCAAGTGTTGGTGTTGCTGTTAATGCAGGGGCTAGTTGTAGTACTAGTTCGTGTGAATCTACTAAAGATCCTAATATTCGTGGTCGTAATTTTTCAACTGTCTTGGATAGCATTATGGATGTGGATTTGGAAGATGATGTGCAAGAGGTAATGGAAAAGAATTATGGATACACATGTGGGTTTCGAACTACTGAGACTATGAGTTTTGATAGGGAGTTAGAGATTGATGTATATTTGTTGGAATCCCTCAAGGAGTGTGCTGATAGTAGTTTTGACATTCTTCGTTGGTGGAAGCAGAATGAGCATAGATTTGTGGTTATTAGTTGTATGAGTAGAGATATTTTGGTCATTCCTATATCTACTGTAGCATCTGAGTTTAATGCAAGTCGTTGCTCATTGGCTCAAAGAATGGTGGAGCCTCTTATATGCACTCAAAATTGGTTAAATTCAGACCCAATCAATTTTGACCTTCATAATCAAGATATTGAAGAAGATTTAAAGTTTGAAGAAGCTATTCAATTTATTATTTAA ATGGAAAAGGAAAAGGAGAAAACAGTTAATACAACAGAGAAGATAGATGATGAAGCAATCGTAAATGTTAATGAAGATGAAGAAATCCATGAGAATACAACAAAAAGGCGTAAGAACAATAAAACATCCATAGTTTGGGAACATTTTGAGCATTTGAAAGGTGATCCTAATAACCCTTATGCTAGGTGTAAATATTGTGGAGCTACTTATGCAAGTCATTCAAAGCGTAATGGTAACGGGAAGATGAAAAATCACTTAGATAATTGTAAGAAATACCCATACCAAAGTAAGAGAGATCCAAATCAAAAAACCTTAGCTTTCAAAACTAAAGAAGAAGGTGTTAAGGATGGTCCTTCCCAACTTAAGTTACATAAAAGAATTCTTAGCTTTGGGGTTATTGAAAATCATAGAGGGGACACCATTGGTAGGGCTATGGAAAAGAGTTTGAAAGATTGGGGAATTGAAAAGGTCATAACTATAACTGTTAATAATGCTAGTTCGAATGATACTGCTATTGCTTTCATGACTAAGAAATTCACAAAAGGGTTGATATGTAATGGTGAGTATTTGCATGTTAGATGTTCTGCACACATATTAAACCTTATTGAAAATCATAGAGAGAACACCATTGGTAGGGCTATGGAAAAGAGTTTGAAAGATTGGGGAATTGAAAAGGTCATAACTATAACTGTTGATAATGCTAGTTCGAACGATACTGCTATTGCTTTCATGACTAGGAGATTCACAAATGGGTTGATATGTAATGACATTACCAAGATTAAGGTTAGAACAGTTGAAAATGTTTTGAGGCATCTTTTCCATGAATCCAACAATTGGCAAACTAGTGGTATTTCTGTTATTTCTAGTGGTAGCTGTAATGCAAGTGTTGGTGTTGCTGTTAATGCAGGGGCTAGTTGTAGTACTAGTTCGTGTGAATCTACTAAAGATCCTAATATTCGTGGTCGTAATTTTTCAACTGTCTTGGATAGCATTATGGATGTGGATTTGGAAGATGATGTGCAAGAGGTAATGGAAAAGAATTATGGATACACATGTGGGTTTCGAACTACTGAGACTATGAGTTTTGATAGGGAGTTAGAGATTGATGTATATTTGTTGGAATCCCTCAAGGAGTGTGCTGATAGTAGTTTTGACATTCTTCGTTGGTGGAAGCAGAATGAGCATAGATTTGTGGTTATTAGTTGTATGAGTAGAGATATTTTGGTCATTCCTATATCTACTGTAGCATCTGAGTTTAATGCAAGTCGTTGCTCATTGGCTCAAAGAATGGTGGAGCCTCTTATATGCACTCAAAATTGGTTAAATTCAGACCCAATCAATTTTGACCTTCATAATCAAGATATTGAAGAAGATTTAAAGTTTGAAGAAGCTATTCAATTTATTATTTAA MEKEKEKTVNTTEKIDDEAIVNVNEDEEIHENTTKRRKNNKTSIVWEHFEHLKGDPNNPYARCKYCGATYASHSKRNGNGKMKNHLDNCKKYPYQSKRDPNQKTLAFKTKEEGVKDGPSQLKLHKRILSFGVIENHRGDTIGRAMEKSLKDWGIEKVITITVNNASSNDTAIAFMTKKFTKGLICNGEYLHVRCSAHILNLIENHRENTIGRAMEKSLKDWGIEKVITITVDNASSNDTAIAFMTRRFTNGLICNDITKIKVRTVENVLRHLFHESNNWQTSGISVISSGSCNASVGVAVNAGASCSTSSCESTKDPNIRGRNFSTVLDSIMDVDLEDDVQEVMEKNYGYTCGFRTTETMSFDRELEIDVYLLESLKECADSSFDILRWWKQNEHRFVVISCMSRDILVIPISTVASEFNASRCSLAQRMVEPLICTQNWLNSDPINFDLHNQDIEEDLKFEEAIQFII Homology
BLAST of CmUC06G114440.1 vs. NCBI nr
Match: XP_038888298.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Benincasa hispida]) HSP 1 Score: 416.0 bits (1068), Expect = 4.3e-112 Identity = 290/752 (38.56%), Postives = 356/752 (47.34%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. NCBI nr
Match: XP_038888299.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Benincasa hispida]) HSP 1 Score: 411.0 bits (1055), Expect = 1.4e-110 Identity = 287/752 (38.16%), Postives = 355/752 (47.21%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. NCBI nr
Match: XP_031739490.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis sativus] >KAE8651423.1 hypothetical protein Csa_002462 [Cucumis sativus]) HSP 1 Score: 360.1 bits (923), Expect = 2.8e-95 Identity = 258/748 (34.49%), Postives = 335/748 (44.79%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. NCBI nr
Match: KAA0038601.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa] >TYK31200.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]) HSP 1 Score: 331.3 bits (848), Expect = 1.4e-86 Identity = 245/703 (34.85%), Postives = 329/703 (46.80%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. NCBI nr
Match: KAA0051170.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]) HSP 1 Score: 278.5 bits (711), Expect = 1.1e-70 Identity = 207/576 (35.94%), Postives = 272/576 (47.22%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy Swiss-Prot
Match: Q0JMB2 (Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0518400 PE=2 SV=3) HSP 1 Score: 63.5 bits (153), Expect = 7.1e-09 Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.6e-08 Identity = 39/114 (34.21%), Postives = 56/114 (49.12%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 4.6e-08 Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 1.0e-07 Identity = 32/99 (32.32%), Postives = 53/99 (53.54%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.0e-07 Identity = 32/99 (32.32%), Postives = 53/99 (53.54%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy TrEMBL
Match: A0A5D3E6G3 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004850 PE=4 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 6.8e-87 Identity = 245/703 (34.85%), Postives = 329/703 (46.80%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy TrEMBL
Match: A0A5A7U7I9 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001250 PE=4 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 5.2e-71 Identity = 207/576 (35.94%), Postives = 272/576 (47.22%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy TrEMBL
Match: A0A5A7SRK8 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00140 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 6.8e-71 Identity = 217/619 (35.06%), Postives = 290/619 (46.85%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy TrEMBL
Match: A0A5A7TXF5 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G001450 PE=4 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 7.5e-70 Identity = 204/588 (34.69%), Postives = 288/588 (48.98%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. ExPASy TrEMBL
Match: A0A5D3CR68 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G001050 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 6.1e-64 Identity = 221/706 (31.30%), Postives = 299/706 (42.35%), Query Frame = 0
BLAST of CmUC06G114440.1 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain ) HSP 1 Score: 62.4 bits (150), Expect = 1.1e-09 Identity = 39/114 (34.21%), Postives = 56/114 (49.12%), Query Frame = 0
HSP 2 Score: 38.9 bits (89), Expect = 1.3e-02 Identity = 24/77 (31.17%), Postives = 40/77 (51.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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