CmUC06G114000.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC06G114000.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Reverse transcriptase domain-containing protein
Location	CmU531Chr06: 6623099 .. 6625076 (-)
Sequence length	555
RNA-Seq Expression	CmUC06G114000.1
Synteny	CmUC06G114000.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCACGTGCGACTGAAGGAGGGAAAACGTAGGGTAGTTGGATATTATCTACTGAAGACTTTTTTAATAAAGGTCCTCCGTTATTCATGATGCCACGTGTCGGTCAAACAGTGGATGGTCTTTTCATTGCACCACTCCCCTGGTGTTGTGTTTTTCAACTTTGGAATTTCTCATTTTACTTTTAAGTCCTCACTTTTTAATACATTATAATAATTATAATACAATATTTTTGTTTTTGTTTTTTTTTTTTTAATGGTTTTGAAAATATATGATTAGTTTAGGTGATATTTGTTTTGATTGGGAAAAATGTGAATTTTCTTTTGCTAAAGTACAATTGTATACTTTAAATGTAAAAAAGTAAAAAGTAGATTTGAATTTACTTATAACACAATGTTCTTAATTCATACTTTATGACTTGAGGTATTCAACAATTAAGTTTTGTTGTTCGAACGTTAAAAATAAATTTACTTGCATTGTATGTTTAAGTCATTGGTTATTTATATGTTTAAGGCATTGCTAATTACATTAAATTTTGTTTTATAATAGATAATATTGTTTTTAGGTTGAATAATTGTCATATTATTTTATTAATATAAATTATTACTTCTATTTGTGGTAGGAAAAAACTTTTTTTTGGAAAATTATTATAAATAGAAAAAATATCAAATTATTTATAAATATTTTGGTTAATTTTGCTATATTTGAAAATAATCTTTTTAGTAAATACTAGAATTTTAACCACACACTTCTCGATCATTATCACATACTTCATACGGGCTAAAGTTCCATTTTTATATTAGGAAAAAAGCTAATACTCTTAAATTAATTATTTATAAAAAATTAAACCATGATTCAAGTTCCTGATTATTCTGAGGAACGAGATTTGTTTCATAAAGGCTTTCCCTAATTTAGATTACTTCAGAACTTGGATTGATTCTATCCTATGTGATTTTGGAGTTGGAGTTGTTCTAGTGGCCTTGAGGTTGGTGCTGTTTCGGGCTCTCCCAGCCACTTTCTCGTTTGTATACTTCACCTGAAAGATGTTGGAAGTTGAATGTGGATGTTGCTTGGTCTGCTGATAGAGGGACGGGTAGTCTTAGGTGGCTTGTTCGGGACCATGACGGGTGTGCTATTTTAGGAGGCTGTAAATTCATCTCTAAAGGTATTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTAAGGGTGCTTGTTGGGGCGTGGTCAGGTCCTATCACCTGTTGTGAGGTGAAGTTTGATGCTCTGGAGGTAATCAGTTCGAGACCATGACAGGTGTGCTATTATGGGAGGCTTTAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAAAAGTCGAAGCTATTCTAGAGGGGCTGAGAGTGCTTGGGGCGTGGGGTCGGGTCCTATCATCTGTTGTTGGAGGTGAAGTCTGATGCTCTGGAGGTCATCAAGCTGCTAAATAGAGAGGCGTTTTCTTATGCTGCAATTGATGTCCTTATAGAGGATATACTGTCCTTATTGAGTTTTTTTGTCATTGTCCTTGTAAGGAGAACAAAGTGGTCCATTAGATTGTTGTTTGGCATCTTCCTTGGAATACTCTTTGATCTGGAAAGATGTTTTTAAAATACTCTGCTCCCGATTCTTAATGATAAGATTGATAGGGAATAATGAACCACTACTCTATCATGGCAACAAATTATTACACACATTTCTTAAAACAGAACATATTATTAAACACGAAAAGCTAAAAGTTTATAAACCAATTAGCTAGATACTTTTTAAGGTTTAAAGCCTCTTAAATAGAATTTAAAAGTTACTATAAATTATAATTTCATTTCAAAATTTTATCTGTTCATGTTTATTTAATGTAAGTTTAAAAAGTTTAAAATTACAAACTTTTGCCTTGTGATATGCAGTACAATTTGCCCATTGGCTTTTTATATTTAAATTTTGCTCTAACCCACTAA

mRNA sequence

ATGACCCACGTGCGACTGAAGGAGGGAAAACGTAGGGTAGTTGGATATTATCTACTGAAGACTTTTTTAATAAAGCCACTTTCTCGTTTGTATACTTCACCTGAAAGATGTTGGAAGTTGAATGTGGATGTTGCTTGGTCTGCTGATAGAGGGACGGGTAGTCTTAGGTGGCTTGTTCGGGACCATGACGGGTGTGCTATTTTAGGAGGCTGTAAATTCATCTCTAAAGGTATTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTAAGGGTGCTTGTTGGGGCGTGGTCAGGTCCTATCACCTGTTGTGAGGTGAAGTTTGATGCTCTGGAGTGCTTGGGGCGTGGGGTCGGGTCCTATCATCTGTTGTTGGAGGTGAAGTCTGATGCTCTGGAGGTCATCAAGCTGCTAAATAGAGAGGCGTTTTCTTATGCTGCAATTGATGTCCTTATAGAGGATATACTGTCCTTATTGAGTTTTTTTGTCATTGTCCTTTACAATTTGCCCATTGGCTTTTTATATTTAAATTTTGCTCTAACCCACTAA

Coding sequence (CDS)

ATGACCCACGTGCGACTGAAGGAGGGAAAACGTAGGGTAGTTGGATATTATCTACTGAAGACTTTTTTAATAAAGCCACTTTCTCGTTTGTATACTTCACCTGAAAGATGTTGGAAGTTGAATGTGGATGTTGCTTGGTCTGCTGATAGAGGGACGGGTAGTCTTAGGTGGCTTGTTCGGGACCATGACGGGTGTGCTATTTTAGGAGGCTGTAAATTCATCTCTAAAGGTATTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTAAGGGTGCTTGTTGGGGCGTGGTCAGGTCCTATCACCTGTTGTGAGGTGAAGTTTGATGCTCTGGAGTGCTTGGGGCGTGGGGTCGGGTCCTATCATCTGTTGTTGGAGGTGAAGTCTGATGCTCTGGAGGTCATCAAGCTGCTAAATAGAGAGGCGTTTTCTTATGCTGCAATTGATGTCCTTATAGAGGATATACTGTCCTTATTGAGTTTTTTTGTCATTGTCCTTTACAATTTGCCCATTGGCTTTTTATATTTAAATTTTGCTCTAACCCACTAA

Protein sequence

MTHVRLKEGKRRVVGYYLLKTFLIKPLSRLYTSPERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVLIEDILSLLSFFVIVLYNLPIGFLYLNFALTH

Homology

[Close]

BLAST of CmUC06G114000.1 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-07
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN D AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +  
Sbjct: 87  WKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQ 146

Query: 98  AWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVLIEDI 157
               PI                   +   + ++SD+LE I LL+R+      I  L+E+I
Sbjct: 147 EHCRPIQ----------------QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEI 200

Query: 158 LSLLSFFVIV 168
             ++    IV
Sbjct: 207 WQMMEDMKIV 200

[Close]

BLAST of CmUC06G114000.1 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 42/130 (32.31%), Postives = 59/130 (45.38%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN + AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +  
Sbjct: 87  WKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQ 146

Query: 98  AWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVLIEDI 157
               PI                         ++SD+LE I LL+R+      I  L+E+I
Sbjct: 147 EHCRPI------------------------HLESDSLEAIHLLHRQCQDQTEIIWLLEEI 192

Query: 158 LSLLSFFVIV 168
             ++    IV
Sbjct: 207 WQMMKDMEIV 192

[Close]

BLAST of CmUC06G114000.1 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-06
Identity = 33/83 (39.76%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +  
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQ 322

Query: 98  AWSGPITCCEVKFDALECLGRGV 121
               PI       +A+  L R V
Sbjct: 323 EHCRPIHLESDSLEAIHLLHRHV 345

[Close]

BLAST of CmUC06G114000.1 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-06
Identity = 33/83 (39.76%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +  
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQ 287

Query: 98  AWSGPITCCEVKFDALECLGRGV 121
               PI       +A+  L R V
Sbjct: 288 EHCRPIHLESDSLEAIHLLHRHV 310

[Close]

BLAST of CmUC06G114000.1 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 38/127 (29.92%), Postives = 55/127 (43.31%), Query Frame = 0


Query: 34  PERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLR 93
           P   W LN D +WS     G + W++R  DG  +L G +F+     + LLE  AILEGLR
Sbjct: 75  PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR 134

Query: 94  VLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVL 153
            L                               L +++D+ EV  LLNR+         +
Sbjct: 135 NLTNL-----------------------GVLRPLHIETDSAEVESLLNRKREDLTKTGWV 178

Query: 154 IEDILSL 161
           +E+IL+L
Sbjct: 195 VEEILNL 178

[Close]

BLAST of CmUC06G114000.1 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN D AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +  
Sbjct: 87  WKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQ 146

Query: 98  AWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVLIEDI 157
               PI                   +   + ++SD+LE I LL+R+      I  L+E+I
Sbjct: 147 EHCRPIQ----------------QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEI 200

Query: 158 LSLLSFFVIV 168
             ++    IV
Sbjct: 207 WQMMEDMKIV 200

[Close]

BLAST of CmUC06G114000.1 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-07
Identity = 42/130 (32.31%), Postives = 59/130 (45.38%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN + AW AD  TG + W++RD  G  I   C+ I     ++ LEV AI EGLR +  
Sbjct: 87  WKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQ 146

Query: 98  AWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVLIEDI 157
               PI                         ++SD+LE I LL+R+      I  L+E+I
Sbjct: 147 EHCRPI------------------------HLESDSLEAIHLLHRQCQDQTEIIWLLEEI 192

Query: 158 LSLLSFFVIV 168
             ++    IV
Sbjct: 207 WQMMKDMEIV 192

[Close]

BLAST of CmUC06G114000.1 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 33/83 (39.76%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +  
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQ 322

Query: 98  AWSGPITCCEVKFDALECLGRGV 121
               PI       +A+  L R V
Sbjct: 323 EHCRPIHLESDSLEAIHLLHRHV 345

[Close]

BLAST of CmUC06G114000.1 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 33/83 (39.76%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 38  WKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLRVLVG 97
           WKLN D AW AD  T  + W++RD  G  I  GC+ I     ++ LEV AI EGLR +  
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQ 287

Query: 98  AWSGPITCCEVKFDALECLGRGV 121
               PI       +A+  L R V
Sbjct: 288 EHCRPIHLESDSLEAIHLLHRHV 310

[Close]

BLAST of CmUC06G114000.1 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-06
Identity = 38/127 (29.92%), Postives = 55/127 (43.31%), Query Frame = 0


Query: 34  PERCWKLNVDVAWSADRGTGSLRWLVRDHDGCAILGGCKFISKGIYMSLLEVEAILEGLR 93
           P   W LN D +WS     G + W++R  DG  +L G +F+     + LLE  AILEGLR
Sbjct: 75  PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR 134

Query: 94  VLVGAWSGPITCCEVKFDALECLGRGVGSYHLLLEVKSDALEVIKLLNREAFSYAAIDVL 153
            L                               L +++D+ EV  LLNR+         +
Sbjct: 135 NLTNL-----------------------GVLRPLHIETDSAEVESLLNRKREDLTKTGWV 178

Query: 154 IEDILSL 161
           +E+IL+L
Sbjct: 195 VEEILNL 178

The following BLAST results are available for this feature:

BLAST of CmUC06G114000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	3.3e-07	33.08	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	1.6e-06	32.31	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022154990.1	2.1e-06	39.76	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	2.1e-06	39.76	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]
XP_022155262.1	1.8e-05	29.92	uncharacterized protein LOC111022403 [Momordica charantia]	[more]

BLAST of CmUC06G114000.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G114000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	1.6e-07	33.08	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	7.9e-07	32.31	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DL64	1.0e-06	39.76	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	1.0e-06	39.76	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DNV9	8.7e-06	29.92	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of CmUC06G114000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 41..94 e-value: 2.7E-7 score: 30.4
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 40..170 e-value: 9.90594E-12 score: 57.324

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC06G114000	CmUC06G114000	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC06G114000.1-exon	CmUC06G114000.1-exon-CmU531Chr06:6623099..6623149	exon
CmUC06G114000.1-exon	CmUC06G114000.1-exon-CmU531Chr06:6623524..6623685	exon
CmUC06G114000.1-exon	CmUC06G114000.1-exon-CmU531Chr06:6623799..6624065	exon
CmUC06G114000.1-exon	CmUC06G114000.1-exon-CmU531Chr06:6625002..6625076	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC06G114000.1-cds	CmUC06G114000.1-cds-CmU531Chr06:6623099..6623149	CDS
CmUC06G114000.1-cds	CmUC06G114000.1-cds-CmU531Chr06:6623524..6623685	CDS
CmUC06G114000.1-cds	CmUC06G114000.1-cds-CmU531Chr06:6623799..6624065	CDS
CmUC06G114000.1-cds	CmUC06G114000.1-cds-CmU531Chr06:6625002..6625076	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC06G114000.1	CmUC06G114000.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity