CmUC06G113590.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC06G113590.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Cytochrome c oxidase assembly factor 4-like protein
Location	CmU531Chr06: 6097081 .. 6099195 (+)
Sequence length	613
RNA-Seq Expression	CmUC06G113590.1
Synteny	CmUC06G113590.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCGCTAACTTGAGCAGTTCAAAATTATGGTAAGAACTTTGAATTTCATGTAAAATTTGCGTCGAACCTGAACGAAGAAAAATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGTTCTTCGTGACCGTTCTGTTCATCGTCTTCTTCTTTTTTACGTTCTGCTAAAACCCTAAGCCCCGAAATGCAAATTGATGTTTATTTTCTTGATCGCCATAATTTTCAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGGTATGCCGCTCATCTCTCCGTGACCATCATTTTCCCCAATTCAATAATTTCATCTTGTTCTAAATTCTAATTTTGTTTATCGATTCATCTTTGACTGTATATATTTATCTCTTAGATTGAATCTGAATTGTTTATGGCCATCTGCCAAGATCTCTGTCTGTTTCTTACCGATTTGAAGTTTCAAAATGCCCAGATTGTGCAATTCTTTAAATTTTCATCTAAAATGACTGTTCTTCTAACTCATTACCTCGCTAATGATTCGTCTAGTAGAAGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAACCTGGCCAACGCAAGTGAAGGTTCTGGAAAGGTGCATAGTGTGCCAAATAATATCTAAGTTTTAGCTTTACTTTATTCAAAATAAATGTATTTTGAGATATCTAAAAGCTCGACTATTCTAGAAACCTGATCATTATGTCTATATTAGAATAGCTTGACAATTACTTTCTAATGCGTTGTTTGTTCAACAAATTTCGAGTTTTGGAAATTTGAATCTCCAACTTCAAGGAGAGGAATATATGGTAATTACCACTGAACTATACTCATGTTGACCCTATCTTCTAAAGTTAAACATAAGGTATTCATGTGAGTTAAACCTAAACATAAGGTATTCATGTGAGTTAAACCTAATGAATAAGATTTGAGTTAGTGTACAACATTTGTATACTAAAATTTAAGATTTCAAAATCTTCCTAAAAGTTAACAAACAACAAATGTTAAGTTAACTCTATGATTGGCCCCCAAATTTACATTAACAAAAAGACGGGTTCATGTGGGTGATTTGGGATCTGAGAACTTGAATCATAAAAAACAACATTGAAATGAGAAAATGCATTGAAATTATAGATGTTTTTCAGGGTCCCTCTGACCAACAATTTGTGATAATCAGCCACAAGTTTACTTCACAACAAACTAAACCATTGACATGACACTTTTCAAGCAATGGATCTACCTTAAGCAAACAGACAAAGAAAGGGTATTTCTTTTTTCTCTATTTACAACATCCATCTACCTTAACATGCCAGCCAGAATTGAAGAGACAAGGTAACAAAGTGGGGTCTGAAACTTGTTTATCATTGAGCTTTGAAGTTAACCCACCTCATTAAATTCCCTTCTCTGTCTTGTCCTTTTAATGGAACTGTAGATTTTCACTTTCAATCTCTATCATGAATCTGCAAGCATCCAGCAAGAGAACAATCCATCCATTTTTCCATGTCTAAGTTACCAACTCTCTCTGTCTTTGTCAACTTAGTTGGTCCAATGCTAAGCAAGAAGATGGGTATTTGTTTCAACTGTAAAGTATAAACAAAGTGAAGTTAGAAACTAAGAGGTAATTCTTCTAAGCAAAATTAAGACTAATGTGTTTGTTAGTCAGCATTACCTTTCAGTATGCATTACAAGTCTCTTCGACTGGTGGAAGAATGTTATAGCAACACTGGAGTATGAATAAACAAGGTGTTTCCCGTGAGGAAAAAAAAGCGTCCAACTTTGAAGATCAGGGGTGTGTTTAGAATGATTTTCTAAGTGCTTTAAAACACTTTCTTTGTACTTGAATTACTTGCTTAAGTATTTAGAAAGTCATTCCAAACAAATCCTAAATTTAGCACAAAAATATTATAGGGCAAGAGAACTACCATTATAAAGGTGTCTGATTATTCAGTGCTGGAACCTCGATTGCTGGGTTCCGATTTGTCACATCAACATGTTGAGAGTTCGGCGGTTCAGTAG

mRNA sequence

ATTCGCTAACTTGAGCAGTTCAAAATTATGGTAAGAACTTTGAATTTCATGTAAAATTTGCGTCGAACCTGAACGAAGAAAAATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGGTATGCCGCTCATCTCTCCATTGAATCTGAATTGTTTATGGCCATCTGCCAAGATCTCTACAAAGAAAGGGTATTTCTTTTTTCTCTATTTACAACATCCATCTACCTTAACATGCCAGCCAGAATTGAAGAGACAAGGTAACAAAATTTTCACTTTCAATCTCTATCATGAATCTGCAAGCATCCAGCAAGAGAACAATCCATCCATTTTTCCATCATTACCTTTCAGTATGCATTACAAGTCTCTTCGACTGGTGGAAGAATGTTATAGCAACACTGGAGTGTCTGATTATTCAGTGCTGGAACCTCGATTGCTGGGTTCCGATTTGTCACATCAACATGTTGAGAGTTCGGCGGTTCAGTAG

Coding sequence (CDS)

ATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGGTATGCCGCTCATCTCTCCATTGAATCTGAATTGTTTATGGCCATCTGCCAAGATCTCTACAAAGAAAGGGTATTTCTTTTTTCTCTATTTACAACATCCATCTACCTTAACATGCCAGCCAGAATTGAAGAGACAAGGTAACAAAATTTTCACTTTCAATCTCTATCATGAATCTGCAAGCATCCAGCAAGAGAACAATCCATCCATTTTTCCATCATTACCTTTCAGTATGCATTACAAGTCTCTTCGACTGGTGGAAGAATGTTATAGCAACACTGGAGTGTCTGATTATTCAGTGCTGGAACCTCGATTGCTGGGTTCCGATTTGTCACATCAACATGTTGAGAGTTCGGCGGTTCAGTAG

Protein sequence

MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTGMPLISPLNLNCLWPSAKISTKKGYFFFLYLQHPSTLTCQPELKRQGNKIFTFNLYHESASIQQENNPSIFPSLPFSMHYKSLRLVEECYSNTGVSDYSVLEPRLLGSDLSHQHVESSAVQ

Homology

[Close]

BLAST of CmUC06G113590.1 vs. NCBI nr
Match: XP_038874602.1 (uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 uncharacterized protein LOC120067191 [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 7.7e-22
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPP SPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ
Sbjct: 1  MGKPPNSPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 54

[Close]

BLAST of CmUC06G113590.1 vs. NCBI nr
Match: XP_004153368.1 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-21
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of CmUC06G113590.1 vs. NCBI nr
Match: XP_011656645.1 (uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 hypothetical protein Csa_004822 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-21
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of CmUC06G113590.1 vs. NCBI nr
Match: XP_008458528.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458529.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458530.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_016902266.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >KAA0033444.1 cytochrome c oxidase assembly factor 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 5.0e-21
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPEN+PPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of CmUC06G113590.1 vs. NCBI nr
Match: XP_022138658.1 (uncharacterized protein LOC111009761 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 3.2e-20
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTGMPLI 60
          MGKPP+SPENQPP HRSDA+DDDENV+QLNECSS YLSLQ+CLIKT+RNWKACQ  +  +
Sbjct: 1  MGKPPVSPENQPPFHRSDADDDDENVRQLNECSSLYLSLQECLIKTDRNWKACQAEVQAL 60

Query: 61 SPLN 65
             N
Sbjct: 61 KSCN 64

[Close]

BLAST of CmUC06G113590.1 vs. ExPASy TrEMBL
Match: A0A0A0KEH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-22
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of CmUC06G113590.1 vs. ExPASy TrEMBL
Match: A0A1S3C8M5 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497907 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPEN+PPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of CmUC06G113590.1 vs. ExPASy TrEMBL
Match: A0A5A7SQI1 (Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001040 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPEN+PPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of CmUC06G113590.1 vs. ExPASy TrEMBL
Match: A0A6J1CDM7 (uncharacterized protein LOC111009761 OS=Momordica charantia OX=3673 GN=LOC111009761 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-20
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTGMPLI 60
          MGKPP+SPENQPP HRSDA+DDDENV+QLNECSS YLSLQ+CLIKT+RNWKACQ  +  +
Sbjct: 1  MGKPPVSPENQPPFHRSDADDDDENVRQLNECSSLYLSLQECLIKTDRNWKACQAEVQAL 60

Query: 61 SPLN 65
             N
Sbjct: 61 KSCN 64

[Close]

BLAST of CmUC06G113590.1 vs. ExPASy TrEMBL
Match: A0A6J1L1R2 (uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-19
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTGMPLI 60
          MG PPISPENQPPLH SDA+ DDENVKQLNECSSFYLSLQ+CLIKTNRNWK CQ  +  +
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 SPLN 65
             N
Sbjct: 61 KACN 64

[Close]

BLAST of CmUC06G113590.1 vs. TAIR 10
Match: AT5G18920.1 (Cox19-like CHCH family protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 12 PPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          PP H+ DA+DDDENVKQL ECSS YLSLQDCL+ +NR+WK+CQ
Sbjct: 19 PPNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQ 61

The following BLAST results are available for this feature:

BLAST of CmUC06G113590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874602.1	7.7e-22	98.15	uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 unchara...	[more]
XP_004153368.1	1.7e-21	94.44	cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumi...	[more]
XP_011656645.1	1.7e-21	94.44	uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 ...	[more]
XP_008458528.1	5.0e-21	92.59	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumi...	[more]
XP_022138658.1	3.2e-20	75.00	uncharacterized protein LOC111009761 [Momordica charantia]	[more]

BLAST of CmUC06G113590.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G113590.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEH3	8.3e-22	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1	[more]
A0A1S3C8M5	2.4e-21	92.59	cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX...	[more]
A0A5A7SQI1	2.4e-21	92.59	Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa ...	[more]
A0A6J1CDM7	1.6e-20	75.00	uncharacterized protein LOC111009761 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1L1R2	1.0e-19	76.56	uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062...	[more]

BLAST of CmUC06G113590.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18920.1	2.8e-14	74.42	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR48236	COX19-LIKE CHCH FAMILY PROTEIN	coord: 4..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC06G113590	CmUC06G113590	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC06G113590.1-exon	CmUC06G113590.1-exon-CmU531Chr06:6097081..6097282	exon
CmUC06G113590.1-exon	CmUC06G113590.1-exon-CmU531Chr06:6097393..6097457	exon
CmUC06G113590.1-exon	CmUC06G113590.1-exon-CmU531Chr06:6097554..6097593	exon
CmUC06G113590.1-exon	CmUC06G113590.1-exon-CmU531Chr06:6098433..6098519	exon
CmUC06G113590.1-exon	CmUC06G113590.1-exon-CmU531Chr06:6098612..6098681	exon
CmUC06G113590.1-exon	CmUC06G113590.1-exon-CmU531Chr06:6098843..6098907	exon
CmUC06G113590.1-exon	CmUC06G113590.1-exon-CmU531Chr06:6099112..6099195	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC06G113590.1-five_prime_utr	CmUC06G113590.1-five_prime_utr-CmU531Chr06:6097081..6097162	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC06G113590.1-cds	CmUC06G113590.1-cds-CmU531Chr06:6097163..6097282	CDS
CmUC06G113590.1-cds	CmUC06G113590.1-cds-CmU531Chr06:6097393..6097457	CDS
CmUC06G113590.1-cds	CmUC06G113590.1-cds-CmU531Chr06:6097554..6097593	CDS
CmUC06G113590.1-cds	CmUC06G113590.1-cds-CmU531Chr06:6098433..6098519	CDS
CmUC06G113590.1-cds	CmUC06G113590.1-cds-CmU531Chr06:6098612..6098681	CDS
CmUC06G113590.1-cds	CmUC06G113590.1-cds-CmU531Chr06:6098843..6098907	CDS
CmUC06G113590.1-cds	CmUC06G113590.1-cds-CmU531Chr06:6099112..6099195	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC06G113590.1	CmUC06G113590.1-protein	polypeptide