CmUC05G103990.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC05G103990.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Heavy metal-associated domain containing protein
Location	CmU531Chr05: 32683548 .. 32684629 (+)
Sequence length	288
RNA-Seq Expression	CmUC05G103990.1
Synteny	CmUC05G103990.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGGCCGGAATCGGAGTTCGGAAGCAAAAAATTTTTCCTCATGCTTCTAGCCTTGCTTCCATGGAGTCCTTATCTCTGCCTCTTGTCTCTGCTTTTTTCTTTCTATCTCTTGCATTTGTCTTTGTGGCTGCAATTTAATGGCTGATGATGCTCCTTCTTGATTTTTCCAGGTTCAGGAAATTGTATTAACAGCTGATATTCGATGTGCTGAATGTCAGAAGAAACTGGCAAATATACTCTCCAAAATGAATGGTGAGTTTGTACTGTATTTTTTGGGGAATTTCGTTCCATCTTTTAATTTTGCTTCTGTTCATGTATAGAATTTGGTCTTCTACCTCTGTTTTGTTTGATTTGATAATCATTTAGGCAGGTTTAGATTGGGAGGAGAGAGGAGAGAAGTAAAGTACAAATAAATATTAAAAGTTGTTTTTTGGAAAAATTAGATTTAGGCATGTTTGCTAGTTTAGATGTTAGTACCTAATGTTGAAATTTATAATTAAAAGTTTATGGGTATAGCATAAATTTTAATAGCAAAAAACAAAAATCCAAAAAAAAAAATTTCAAACACCAAATGGGACTTTTTTTTTTTTTTTAATAGAAAATTAAGTTGGTAGACATTGCTTTGAGTTTATTTATTTCGATATCTACTCGTTGGGTATTTAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAGTTTTTAATAAGGCTTTTTTAATAACAATTTCATTTTATTAAATTAACTTAAATGACAAGACAAAATCTCACCGATAAAAGTAGAATTTATAAACATAATTGTCTAAAGCTTCATCTTTTTTTTTTTTTTTTTTTAAATATTGACCATGGATTCAAAATTCTATTTAGAAAGATGAAGCTTTCAAGAAGCAAATAAACCATTTTAAAAAACTAAATGGTTATCATATAATTCAAGCATCAATAATTTGGTGGTTTTTGTGCGGTACAGATACAGAGTCTGTGGTGGTGAATTTGTTGGACAAGAAAGTGATATTGACTCGAAGATTACAGGTTCCATCCAGAGTTTCAACAATCAAGAGATTGTTTGGTTATTCTTGCAGATAA

mRNA sequence

ATGGCGGTGGCCGGAATCGGAGTTCGGAAGCAAAAAATTTTTCCTCATGCTTCTAGCCTTGCTTCCATGGAGTCCTTATCTCTGCCTCTTGTTCAGGAAATTGTATTAACAGCTGATATTCGATGTGCTGAATGTCAGAAGAAACTGGCAAATATACTCTCCAAAATGAATGATACAGAGTCTGTGGTGGTGAATTTGTTGGACAAGAAAGTGATATTGACTCGAAGATTACAGGTTCCATCCAGAGTTTCAACAATCAAGAGATTGTTTGGTTATTCTTGCAGATAA

Coding sequence (CDS)

ATGGCGGTGGCCGGAATCGGAGTTCGGAAGCAAAAAATTTTTCCTCATGCTTCTAGCCTTGCTTCCATGGAGTCCTTATCTCTGCCTCTTGTTCAGGAAATTGTATTAACAGCTGATATTCGATGTGCTGAATGTCAGAAGAAACTGGCAAATATACTCTCCAAAATGAATGATACAGAGTCTGTGGTGGTGAATTTGTTGGACAAGAAAGTGATATTGACTCGAAGATTACAGGTTCCATCCAGAGTTTCAACAATCAAGAGATTGTTTGGTTATTCTTGCAGATAA

Protein sequence

MAVAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLDKKVILTRRLQVPSRVSTIKRLFGYSCR

Homology

[Close]

BLAST of CmUC05G103990.1 vs. NCBI nr
Match: XP_038892707.1 (uncharacterized protein LOC120081691 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 2  AVAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTES 61
          A AGIGVRK+KIFPHASSLAS+ESLSLPLVQEIVLTADI CAECQKKLANILSKMNDTES
Sbjct: 3  AAAGIGVRKKKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANILSKMNDTES 62

Query: 62 VVVNLLDKKVILTRRLQVPSRVSTIKRLFGYSCR 96
          VVVNLLDKKVILTRRLQ+PSR+STIKRL G  CR
Sbjct: 63 VVVNLLDKKVILTRRLQIPSRISTIKRLLGSPCR 96

[Close]

BLAST of CmUC05G103990.1 vs. NCBI nr
Match: KGN52069.1 (hypothetical protein Csa_009028 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 3  VAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTESV 62
          V GIGVRK++IFPHASSLAS+ESL+LPLVQEIVLTADI CAECQKKLANILSKMNDTESV
Sbjct: 5  VVGIGVRKKRIFPHASSLASIESLTLPLVQEIVLTADIGCAECQKKLANILSKMNDTESV 64

Query: 63 VVNLLDKKVILTRRLQVPSRVSTIKRLFGYSCR 96
          VVNLLDKKVILTRR Q+PSRVSTI+RLF   CR
Sbjct: 65 VVNLLDKKVILTRRSQIPSRVSTIRRLFASPCR 97

[Close]

BLAST of CmUC05G103990.1 vs. NCBI nr
Match: XP_022968296.1 (uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 2   AVAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTES 61
           A AGIGVRK KIFPHASSLAS+ESLSLPLVQEIV TADI CAECQKKLANILSKMNDTES
Sbjct: 11  AAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFTADIGCAECQKKLANILSKMNDTES 70

Query: 62  VVVNLLDKKVILTRRLQVP-SRVSTIKRLFGYSCR 96
           VVVNLLDKKVILTR+LQ+P SRVST+KRL G S R
Sbjct: 71  VVVNLLDKKVILTRKLQIPSSRVSTVKRLLGSSFR 105

[Close]

BLAST of CmUC05G103990.1 vs. NCBI nr
Match: KAG7013033.1 (hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 2   AVAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTES 61
           A AGIGVRK KIFPHASSLAS+ESLSLPLVQEIV  ADI CAECQKKLANIL+KMNDTES
Sbjct: 10  AAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLANILAKMNDTES 69

Query: 62  VVVNLLDKKVILTRRLQVP-SRVSTIKRLFGYSCR 96
           VVVNLLDKKVILTR+LQ+P SRVSTIKRL G S R
Sbjct: 70  VVVNLLDKKVILTRKLQIPTSRVSTIKRLLGSSFR 104

[Close]

BLAST of CmUC05G103990.1 vs. NCBI nr
Match: XP_023542320.1 (uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 2   AVAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTES 61
           A AGIGVRK KIFPHASSLAS+ESLSLPLVQEIV  ADI CAECQKKLANIL+KMNDTES
Sbjct: 11  AAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLANILAKMNDTES 70

Query: 62  VVVNLLDKKVILTRRLQVP-SRVSTIKRLFGYSCR 96
           VVVNLLDKKVILTR+LQ+P SRVSTIKRL G S R
Sbjct: 71  VVVNLLDKKVILTRKLQIPTSRVSTIKRLLGSSFR 105

[Close]

BLAST of CmUC05G103990.1 vs. ExPASy TrEMBL
Match: A0A0A0KT62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608570 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 3  VAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTESV 62
          V GIGVRK++IFPHASSLAS+ESL+LPLVQEIVLTADI CAECQKKLANILSKMNDTESV
Sbjct: 5  VVGIGVRKKRIFPHASSLASIESLTLPLVQEIVLTADIGCAECQKKLANILSKMNDTESV 64

Query: 63 VVNLLDKKVILTRRLQVPSRVSTIKRLFGYSCR 96
          VVNLLDKKVILTRR Q+PSRVSTI+RLF   CR
Sbjct: 65 VVNLLDKKVILTRRSQIPSRVSTIRRLFASPCR 97

[Close]

BLAST of CmUC05G103990.1 vs. ExPASy TrEMBL
Match: A0A6J1HUG9 (uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467567 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 2   AVAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTES 61
           A AGIGVRK KIFPHASSLAS+ESLSLPLVQEIV TADI CAECQKKLANILSKMNDTES
Sbjct: 11  AAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFTADIGCAECQKKLANILSKMNDTES 70

Query: 62  VVVNLLDKKVILTRRLQVP-SRVSTIKRLFGYSCR 96
           VVVNLLDKKVILTR+LQ+P SRVST+KRL G S R
Sbjct: 71  VVVNLLDKKVILTRKLQIPSSRVSTVKRLLGSSFR 105

[Close]

BLAST of CmUC05G103990.1 vs. ExPASy TrEMBL
Match: A0A6J1G188 (uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 2   AVAGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTES 61
           A AGIGVRK KIFPHASSLAS+ESLSLPLVQEIV  ADI CAECQKKLANIL+KMNDTES
Sbjct: 9   AAAGIGVRKLKIFPHASSLASVESLSLPLVQEIVFAADIGCAECQKKLANILAKMNDTES 68

Query: 62  VVVNLLDKKVILTRRLQV-PSRVSTIKRLFGYS 94
           VVVNLLDKKVILTR+LQ+  SRVSTIKRL G S
Sbjct: 69  VVVNLLDKKVILTRKLQIQTSRVSTIKRLLGSS 101

[Close]

BLAST of CmUC05G103990.1 vs. ExPASy TrEMBL
Match: A0A6J1DB71 (uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018707 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 4   AGIGVRKQKIFPHASSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTESVV 63
           A IGVRK +IFPHASSLAS+ESLSLPLVQEIVLTADIRC ECQ KLANILSK+NDTESVV
Sbjct: 10  AVIGVRKPRIFPHASSLASIESLSLPLVQEIVLTADIRCPECQNKLANILSKINDTESVV 69

Query: 64  VNLLDKKVILTRRLQVP-------SRVSTIKRLFGYSCR 96
           VNLL+KKVILTRRLQVP       S+V+TIKRL G S R
Sbjct: 70  VNLLEKKVILTRRLQVPSTCSNSSSKVATIKRLLGSSFR 108

[Close]

BLAST of CmUC05G103990.1 vs. ExPASy TrEMBL
Match: A0A6J1G176 (uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.6e-27
Identity = 80/120 (66.67%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 2   AVAGIGVRKQKIFPHASSLASMESLSLPL---------------------------VQEI 61
           A AGIGVRK KIFPHASSLAS+ESLSLPL                           VQEI
Sbjct: 9   AAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWSVILQVQEI 68

Query: 62  VLTADIRCAECQKKLANILSKMNDTESVVVNLLDKKVILTRRLQV-PSRVSTIKRLFGYS 94
           V  ADI CAECQKKLANIL+KMNDTESVVVNLLDKKVILTR+LQ+  SRVSTIKRL G S
Sbjct: 69  VFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVSTIKRLLGSS 128

[Close]

BLAST of CmUC05G103990.1 vs. TAIR 10
Match: AT1G68585.1 (unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-14
Identity = 42/84 (50.00%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 18  SSLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLDKKVILT--- 77
           +SLAS+ SLS+PL+QEIVL+ADIRC++CQ+K+A+I+++M +T S++V++L+KKV LT   
Sbjct: 26  TSLASVASLSMPLIQEIVLSADIRCSDCQEKVADIMARMIETYSILVSVLEKKVTLTCTY 85

Query: 78  ---RRLQ------VPSRVSTIKRL 90
              RR+       +  ++STIKRL
Sbjct: 86  SGDRRVSKSYGEALLCKISTIKRL 109

[Close]

BLAST of CmUC05G103990.1 vs. TAIR 10
Match: AT2G35730.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 19 SLASMESLSLPLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLDKKVILTRRLQ 78
          +L   E LSLP  Q I + AD+ C  CQ +++ I+SKM   E  VV+ L KK+++ R   
Sbjct: 10 TLMLCEKLSLPSFQVIEINADVGCVACQDRVSKIVSKMTGIEEYVVD-LKKKLVMARGDF 69

Query: 79 VPSRVST 86
           P  VS+
Sbjct: 70 RPRLVSS 75

The following BLAST results are available for this feature:

BLAST of CmUC05G103990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892707.1	2.3e-36	90.43	uncharacterized protein LOC120081691 [Benincasa hispida]	[more]
KGN52069.1	2.1e-34	87.10	hypothetical protein Csa_009028 [Cucumis sativus]	[more]
XP_022968296.1	4.0e-33	87.37	uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima]	[more]
KAG7013033.1	2.6e-32	86.32	hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023542320.1	2.6e-32	86.32	uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmUC05G103990.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC05G103990.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT62	1.0e-34	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608570 PE=4 SV=1	[more]
A0A6J1HUG9	1.9e-33	87.37	uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G188	1.8e-31	86.02	uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DB71	3.4e-30	79.80	uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1G176	4.6e-27	66.67	uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmUC05G103990.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68585.1	7.6e-14	50.00	unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bact...	[more]
AT2G35730.1	1.1e-04	40.30	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 30..95 e-value: 5.5E-7 score: 31.7
None	No IPR available	PANTHER	PTHR47294	OS08G0431150 PROTEIN	coord: 16..80
None	No IPR available	PANTHER	PTHR47294:SF4	PROTEIN, PUTATIVE-RELATED	coord: 16..80
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 32..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC05G103990	CmUC05G103990	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G103990.1-exon	CmUC05G103990.1-exon-CmU531Chr05:32683548..32683637	exon
CmUC05G103990.1-exon	CmUC05G103990.1-exon-CmU531Chr05:32683724..32683805	exon
CmUC05G103990.1-exon	CmUC05G103990.1-exon-CmU531Chr05:32684514..32684629	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G103990.1-cds	CmUC05G103990.1-cds-CmU531Chr05:32683548..32683637	CDS
CmUC05G103990.1-cds	CmUC05G103990.1-cds-CmU531Chr05:32683724..32683805	CDS
CmUC05G103990.1-cds	CmUC05G103990.1-cds-CmU531Chr05:32684514..32684629	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC05G103990.1	CmUC05G103990.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding