CmUC04G070180.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC04G070180.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr04: 7867243 .. 7867566 (-)
Sequence length	237
RNA-Seq Expression	CmUC04G070180.1
Synteny	CmUC04G070180.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCGCACAATTCAAGGTATGAATCGTGCAAATCGTGTTAATCGTAACGTTCCAATTCAGGTTTTAGAAGGAAAAGAATACCATTTTTGAGTTTCATCGCGCGACCGCCGGAGAAGATGGGTTCTCTATCAAGTTGCAGCACGCCAGACGGGAAAACAAAGTCGAATCGTCACCGGAAGTATCCATTCTCCTTCTCTTCGAGTTGCAGCACGCCGGACGGGAGAAGACAGGCTTCACAATTCGCATTTTGCAGCCGGATCAGTGGAGATTGGAGAAGAAGAAGATGAAGAAAAAAATAATGATAGCCTAGAAGAAAGATAA

mRNA sequence

ATGTATCGCACAATTCAAGGTATGAATCGTGCAAATCGTGTTAATCGTAACGTTCCAATTCAGACGGGAAAACAAAGTCGAATCGTCACCGGAAGTATCCATTCTCCTTCTCTTCGAGTTGCAGCACGCCGGACGGGAGAAGACAGGCTTCACAATTCGCATTTTGCAGCCGGATCAGTGGAGATTGGAGAAGAAGAAGATGAAGAAAAAAATAATGATAGCCTAGAAGAAAGATAA

Coding sequence (CDS)

ATGTATCGCACAATTCAAGGTATGAATCGTGCAAATCGTGTTAATCGTAACGTTCCAATTCAGACGGGAAAACAAAGTCGAATCGTCACCGGAAGTATCCATTCTCCTTCTCTTCGAGTTGCAGCACGCCGGACGGGAGAAGACAGGCTTCACAATTCGCATTTTGCAGCCGGATCAGTGGAGATTGGAGAAGAAGAAGATGAAGAAAAAAATAATGATAGCCTAGAAGAAAGATAA

Protein sequence

MYRTIQGMNRANRVNRNVPIQTGKQSRIVTGSIHSPSLRVAARRTGEDRLHNSHFAAGSVEIGEEEDEEKNNDSLEER

Homology

The following BLAST results are available for this feature:

BLAST of CmUC04G070180.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC04G070180.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC04G070180.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC04G070180.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC04G070180	CmUC04G070180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC04G070180.1-exon	CmUC04G070180.1-exon-CmU531Chr04:7867243..7867416	exon
CmUC04G070180.1-exon	CmUC04G070180.1-exon-CmU531Chr04:7867504..7867566	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC04G070180.1-cds	CmUC04G070180.1-cds-CmU531Chr04:7867243..7867416	CDS
CmUC04G070180.1-cds	CmUC04G070180.1-cds-CmU531Chr04:7867504..7867566	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC04G070180.1	CmUC04G070180.1-protein	polypeptide