CmUC02G046630.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC02G046630.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Protein transport protein Sec61 subunit beta
Location	CmU531Chr02: 34330508 .. 34330831 (+)
Sequence length	324
RNA-Seq Expression	CmUC02G046630.1
Synteny	CmUC02G046630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCTACTTCCAGACCTGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACTGCTGGCCTCCGCCGCCGCCGTATCGGCTCCACTTCTGCCGCTGCCTCTACTGGACTCGTAAGCGGCGGATCAAGCGGCGGCGGAAACATGCTCAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTTCTCCCACCGTTGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTTTAA

mRNA sequence

ATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCTACTTCCAGACCTGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACTGCTGGCCTCCGCCGCCGCCGTATCGGCTCCACTTCTGCCGCTGCCTCTACTGGACTCGTAAGCGGCGGATCAAGCGGCGGCGGAAACATGCTCAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTTCTCCCACCGTTGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTTTAA

Coding sequence (CDS)

ATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCTACTTCCAGACCTGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACTGCTGGCCTCCGCCGCCGCCGTATCGGCTCCACTTCTGCCGCTGCCTCTACTGGACTCGTAAGCGGCGGATCAAGCGGCGGCGGAAACATGCTCAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTTCTCCCACCGTTGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTTTAA

Protein sequence

MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV

Homology

[Close]

BLAST of CmUC02G046630.1 vs. NCBI nr
Match: XP_022958107.1 (protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532.1 protein transport protein Sec61 subunit beta [Cucurbita maxima] >XP_023534505.1 protein transport protein Sec61 subunit beta [Cucurbita pepo subsp. pepo] >KAG7013903.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS A +TGLVSGGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of CmUC02G046630.1 vs. NCBI nr
Match: XP_038902812.1 (protein transport protein Sec61 subunit beta [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 3.7e-43
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNM 60
           MARG SQSQS SSSTSRPGVVAPRGSAAATAGLRRRR GSTSAAASTGLV GGSSGGGNM
Sbjct: 1   MARGVSQSQSTSSSTSRPGVVAPRGSAAATAGLRRRRPGSTSAAASTGLVGGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of CmUC02G046630.1 vs. NCBI nr
Match: XP_004149541.1 (protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypothetical protein Csa_023023 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ASTGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of CmUC02G046630.1 vs. NCBI nr
Match: XP_008463929.1 (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA0035333.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa] >TYK14304.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA ASTGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of CmUC02G046630.1 vs. NCBI nr
Match: XP_022140347.1 (protein transport protein Sec61 subunit beta [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 8.5e-40
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRR+ ST +A S G+V  GSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 107

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-15
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVV 83
           RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++
Sbjct: 9   RGSAAATASMRRRK-------PTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 6   SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYT 65
           S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT
Sbjct: 7   SGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT------SAGTGGMWRFYT 66

Query: 66  DDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           +D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Sbjct: 67  EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy Swiss-Prot
Match: P60468 (Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 6   SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYT 65
           S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT
Sbjct: 7   SGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT------SAGTGGMWRFYT 66

Query: 66  DDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           +D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Sbjct: 67  EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy Swiss-Prot
Match: Q9CQS8 (Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 6   SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYT 65
           S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT
Sbjct: 7   SGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT------SAGTGGMWRFYT 66

Query: 66  DDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           +D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Sbjct: 67  EDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy Swiss-Prot
Match: Q5RB31 (Protein transport protein Sec61 subunit beta OS=Pongo abelii OX=9601 GN=SEC61B PE=3 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 6   SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNMLRFYT 65
           S +   SS  S    VA R + +     +    G+ SA  +T      S+G G M RFYT
Sbjct: 7   SGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT------SAGTGGMWRFYT 66

Query: 66  DDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           +D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Sbjct: 67  EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy TrEMBL
Match: A0A6J1JZ65 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111491039 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS A +TGLVSGGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy TrEMBL
Match: A0A6J1H102 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111459432 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS A +TGLVSGGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy TrEMBL
Match: A0A0A0KHR1 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G293930 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.9e-41
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ASTGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy TrEMBL
Match: A0A5D3CTD4 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00270 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.3e-41
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA ASTGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of CmUC02G046630.1 vs. ExPASy TrEMBL
Match: A0A1S3CKE5 (Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC103501938 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.3e-41
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA ASTGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of CmUC02G046630.1 vs. TAIR 10
Match: AT5G60460.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 130.6 bits (327), Expect = 7.7e-31
Identity = 76/108 (70.37%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MARGTSQSQ---SASSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG 60
           MARG+SQSQ   S  SST+RPG+ APRGSAAATAG+RRRR+G      S+G  SG  SG 
Sbjct: 1   MARGSSQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGG-GGGVSSGGGSGVGSGS 60

Query: 61  GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAA 106
            NMLRFYTDDAPGLKISPTVVL++SLCFIGFVT LHVFGKLY  +S +
Sbjct: 61  SNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKLYLHKSGS 107

[Close]

BLAST of CmUC02G046630.1 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-16
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVV 83
           RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++
Sbjct: 9   RGSAAATASMRRRK-------PTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of CmUC02G046630.1 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-16
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVV 83
           RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++
Sbjct: 9   RGSAAATASMRRRK-------PTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of CmUC02G046630.1 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-16
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVV 83
           RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++
Sbjct: 9   RGSAAATASMRRRK-------PTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of CmUC02G046630.1 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-16
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAASTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVV 83
           RGSAAATA +RRR+        ++G   GG+SGG  G+ML+FYTDDAPGLKISP VVL++
Sbjct: 9   RGSAAATASMRRRK-------PTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

The following BLAST results are available for this feature:

BLAST of CmUC02G046630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958107.1	2.5e-44	96.26	protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532....	[more]
XP_038902812.1	3.7e-43	95.33	protein transport protein Sec61 subunit beta [Benincasa hispida]	[more]
XP_004149541.1	1.0e-40	90.83	protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypot...	[more]
XP_008463929.1	1.3e-40	90.83	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA00353...	[more]
XP_022140347.1	8.5e-40	88.79	protein transport protein Sec61 subunit beta [Momordica charantia]	[more]

BLAST of CmUC02G046630.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	4.4e-15	61.54	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P60467	3.7e-06	39.58	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]
P60468	3.7e-06	39.58	Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B P...	[more]
Q9CQS8	3.7e-06	39.58	Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b ...	[more]
Q5RB31	3.7e-06	39.58	Protein transport protein Sec61 subunit beta OS=Pongo abelii OX=9601 GN=SEC61B P...	[more]

BLAST of CmUC02G046630.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ65	1.2e-44	96.26	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H102	1.2e-44	96.26	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0KHR1	4.9e-41	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A5D3CTD4	6.3e-41	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CKE5	6.3e-41	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of CmUC02G046630.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60460.1	7.7e-31	70.37	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.1	3.1e-16	61.54	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	3.1e-16	61.54	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	3.1e-16	61.54	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	3.1e-16	61.54	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030671	Protein transport Sec61-beta/Sbh	PIRSF	PIRSF006398	Sec61_beta	coord: 6..104 e-value: 8.8E-26 score: 88.1
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 1..104
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 58..96 e-value: 5.9E-17 score: 61.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	PANTHER	PTHR13509:SF14	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 1..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC02G046630	CmUC02G046630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC02G046630.1-exon	CmUC02G046630.1-exon-CmU531Chr02:34330508..34330831	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC02G046630.1-cds	CmUC02G046630.1-cds-CmU531Chr02:34330508..34330831	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC02G046630.1	CmUC02G046630.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component	GO:0005784	Sec61 translocon complex
cellular_component	GO:0016021	integral component of membrane