CmUC02G036620.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC02G036620.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Actin cytoskeleton-regulatory complex protein
Location	CmU531Chr02: 22340740 .. 22342952 (-)
Sequence length	372
RNA-Seq Expression	CmUC02G036620.1
Synteny	CmUC02G036620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTCACTACAAAGCCTAAACATGTCAACTAATTAAACTATTTTAGTTTCTAGCATGTTTGAGAATGTTTGTCATGTTAAAAAATATTCTAAACATAGTTTTAATGATTAAAAGCAAGTGTTAGAGTGATTTTTCGCATAATCAAAGTCATTTTAACTATTTTAAAATTACTCTAAACCATATCTAAAACACTATCTTTGTATTTGTCTCAAAGCTATGCTTGTTTTAGTTTCCTCCATCTAAAATTGATTCATAGTTAAAAATCCACAAACAATTCAACAGGTTGATTATTTTCTTGATGCAAGATTGTCATTCTTTATTTTGTATCATTCTATACAAAAAGGATAAAACCTTGCCAAAGAAAATAAACACAAAAAGTTTGAGTTTTGTTTCAAAATAGGTTTTTGTAAAAGTTGATTACTCTCCCCTGTACAAAGGTATATTCATACCTCATTTTTATGCTTAATACCGACTTTGACTCTTTAATCAAGTTACAAAATACCTCAAAACCAATTCTTATGAGTTATGTGCAATATTACATGGTAAAGTTTAGGACTGTTATTAAATATAGCAAAATCAGTTAAACTATTTACAAATATAAAAAATTTTCACTGTTTATCAGTTATAAACTCCTATCGCTGATAAACAACCAAAATTTTCTATATTTGTAAATATTTTGATTTTTTTTTATTTATAATAAATTTTTAAGATTCATGTTACCAACACTATTTCTTTTAAATCATACTTAAATTCAGTCCAAATTTTAATTTCAAAACAAAGGAAAAAAAAAAGTGTACAATAATTAAATCGAAACATCAGATTAGATATAAAACTAAAATTGAAAAATCAGTGACATTTTGTTAGATTTTTGTAGGACCATAATATCATGTGCTCTTCACTACAGCCTCTAGGACGTTAATGTGTTATTATCATAATTTGGCCCAAATCATTAAATATCTTTGATTCATTTAAATCAATTATAAACCATGTAGGGCTTCTATGTGAACTTTGTAGGGAAATTACAAATAAGTTTAAATATTAAAGAAATAACCATTACAAAAACATATAAATCATAAAATATATTAATGTTCAATAATTATTAAAAATCACAAATAATATTCTAGTATAATAAGTTAAAAAACACTTTTCCTCCTATAAAAAGTTATAGGAGTAATAATTTAGTATACTTTTAATTTGTATCGATTTTGTCTTGAACTTTAGTGAATTTAGTGTGCGTAACCATTTTTAGTCTAATATGCAACGATTTATTCTTATTGTATAGTTATGGTTAAGATTTGTTAGAATTTCTTACCTAGGTATAAATTAATAAAAAAAATTAGGGACCAATACGTCTATAATTTTTATAATTTTTTATAAAATTTAAAATCAATAAATGGTAAAAAAAATTTGATATTTAATTTTGATGAAATTTTGTACGAAATAAATAAAATTGTTATAAATTTGAAAGTATATAGATTAAATACTTAATAAATCAAAATTTAAGTACTAAATTTTAGGTAAATTAAAGTTAGGGCCAAAATTGAATTCTAGTCTCTTATTTATTTATTTATTTTAATCACATTTTGTATACAAGGAGACTAAATTTTAGGTCCATCAAAGTTAGGGACAAAAAGTTAACTATTTAATCCACTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTCCTTTTTAAACTATGAGTGAATTTGATGCTTACACAATAAGCTAAAAATAAGGAAAGAATAAGATAAAATAAGATAAGATTCAACCTAATTTGTTTGGAATTTGAAAAAACTCATATTTCTTCTCCATTATAGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACTCACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAG

mRNA sequence

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACTCACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAG

Coding sequence (CDS)

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACTCACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAG

Protein sequence

MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIRSRDPCVDDREQCRTHQQLDMTLRLADN

Homology

[Close]

BLAST of CmUC02G036620.1 vs. NCBI nr
Match: XP_023532519.1 (uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 3   AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAI 62
           AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFGA  G E E+  Q GVA GP I
Sbjct: 15  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGAEIGMEMEMENQQGVAAGPEI 74

Query: 63  RRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
           RRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Sbjct: 75  RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 109

[Close]

BLAST of CmUC02G036620.1 vs. NCBI nr
Match: XP_022947872.1 (uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothetical protein SDJN03_02152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-28
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAI 62
          AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFG   GKE E+  QPGVA GP I
Sbjct: 2  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEI 61

Query: 63 RRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          RRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Sbjct: 62 RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 95

[Close]

BLAST of CmUC02G036620.1 vs. NCBI nr
Match: KAG7034949.1 (hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-28
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3   AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAI 62
           AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFG   GKE E+  QPGVA GP I
Sbjct: 47  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEI 106

Query: 63  RRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
           RRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Sbjct: 107 RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 140

[Close]

BLAST of CmUC02G036620.1 vs. NCBI nr
Match: KGN46704.1 (hypothetical protein Csa_020980 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPA 60
          MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPA
Sbjct: 1  MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61 IRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          IRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIR
Sbjct: 61 IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIR 95

[Close]

BLAST of CmUC02G036620.1 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 6.0e-13
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 4  VVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRR 63
          + ++ L+C++LA +LLIQ  A+      +  +A P       + + +  PG+AE P IRR
Sbjct: 1  MAKISLLCLILAQILLIQAMASTATTTTSHVSAAP----EPSETDNVEGPGLAEAPEIRR 60

Query: 64 LGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          LGKHH   S+ GGGV+IGGL TAVFA VFCYIR
Sbjct: 61 LGKHHVDKSVAGGGVIIGGLVTAVFAAVFCYIR 89

[Close]

BLAST of CmUC02G036620.1 vs. ExPASy TrEMBL
Match: A0A6J1G7L7 (uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC111451632 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAI 62
          AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFG   GKE E+  QPGVA GP I
Sbjct: 2  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEI 61

Query: 63 RRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          RRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Sbjct: 62 RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 95

[Close]

BLAST of CmUC02G036620.1 vs. ExPASy TrEMBL
Match: A0A0A0KCY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPA 60
          MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPA
Sbjct: 1  MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61 IRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          IRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIR
Sbjct: 61 IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIR 95

[Close]

BLAST of CmUC02G036620.1 vs. ExPASy TrEMBL
Match: A5BAN6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 6  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
          RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3  RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE--VAEAPANRRLG 62

Query: 66 KHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          KHH   SI GGGV+IGGLATA+FA VFCYIR
Sbjct: 63 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIR 91

[Close]

BLAST of CmUC02G036620.1 vs. ExPASy TrEMBL
Match: F6GXP2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0134g00170 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-10
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 6  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
          RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3  RLILVCLLLAEILVVQALAGGSGVDPLGSVVRVADQPSPGGGGESLE--VAEAPANRRLG 62

Query: 66 KHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          KHH   SI GGGV+IGGLATA+FA VFCYIR
Sbjct: 63 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIR 91

[Close]

BLAST of CmUC02G036620.1 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 9  LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQ-PGVAEGPAIRRLGKH 68
          L C+++A +LLIQ   A  + A T  T +P   A    E+  R+   VAE P IRRLGKH
Sbjct: 7  LFCLIVAEILLIQ---AMTSIATT--TDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGKH 66

Query: 69 HFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          H   S+ GGGV+IGGL TA+FA VFCYIR
Sbjct: 67 HGDKSVAGGGVIIGGLVTAIFAAVFCYIR 90

[Close]

BLAST of CmUC02G036620.1 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-06
Identity = 37/103 (35.92%), Postives = 50/103 (48.54%), Query Frame = 0


Query: 9   LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHH 68
           ++C LL   +     A++ AE P    A    G +    EE   P V+      R G HH
Sbjct: 7   VLCFLLT-YVFSMAAASSEAEPP----ATRKLGRHEWPGEEAEAPEVSHLEETVRRGHHH 66

Query: 69  --FHTSIPGGGVLIGGLATAVFAVVFCYIRS---RDPCVDDRE 107
                S+ GGGV++GGLAT    VVFCYIR+     P  D++E
Sbjct: 67  STVERSVAGGGVILGGLATTFLVVVFCYIRATRKHKPNYDEKE 104

The following BLAST results are available for this feature:

BLAST of CmUC02G036620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532519.1	1.7e-28	75.79	uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo]	[more]
XP_022947872.1	2.9e-28	76.84	uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothet...	[more]
KAG7034949.1	2.9e-28	76.84	hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KGN46704.1	3.8e-28	75.00	hypothetical protein Csa_020980 [Cucumis sativus]	[more]
KAG6572323.1	6.0e-13	47.31	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmUC02G036620.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G036620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7L7	1.4e-28	76.84	uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC1114516...	[more]
A0A0A0KCY0	1.9e-28	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1	[more]
A5BAN6	2.3e-10	50.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1	[more]
F6GXP2	3.9e-10	50.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0134g00170 PE=4 SV=...	[more]
A0A5D3C590	6.7e-10	51.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmUC02G036620.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	7.5e-06	35.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 5..96
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 5..96

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC02G036620	CmUC02G036620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC02G036620.1-exon	CmUC02G036620.1-exon-CmU531Chr02:22340740..22340823	exon
CmUC02G036620.1-exon	CmUC02G036620.1-exon-CmU531Chr02:22342665..22342952	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC02G036620.1-cds	CmUC02G036620.1-cds-CmU531Chr02:22340740..22340823	CDS
CmUC02G036620.1-cds	CmUC02G036620.1-cds-CmU531Chr02:22342665..22342952	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC02G036620.1	CmUC02G036620.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane