CmUC01G012460.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC01G012460.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RING-H2 finger protein ATL56-like
Location	CmU531Chr01: 24802329 .. 24802730 (-)
Sequence length	402
RNA-Seq Expression	CmUC01G012460.1
Synteny	CmUC01G012460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTGGTGGGGATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGGGAAGGAATTTGGAGAAGCAATAGTAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAACTTCCTTGTTATGAGTACAAAATGAGGGATTTGGAAATGGAATGTGTAGTTTGTTTGGAGAATTTCAAAAATGGGGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCATGTCCAATGTATAGATTCTTGGCTTTTGAACAGACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCACTGATTCAATTGAATTGA

mRNA sequence

ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTGGTGGGGATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGGGAAGGAATTTGGAGAAGCAATAGTAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAACTTCCTTGTTATGAGTACAAAATGAGGGATTTGGAAATGGAATGTGTAGTTTGTTTGGAGAATTTCAAAAATGGGGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCATGTCCAATGTATAGATTCTTGGCTTTTGAACAGACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCACTGATTCAATTGAATTGA

Coding sequence (CDS)

ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTGGTGGGGATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGGGAAGGAATTTGGAGAAGCAATAGTAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAACTTCCTTGTTATGAGTACAAAATGAGGGATTTGGAAATGGAATGTGTAGTTTGTTTGGAGAATTTCAAAAATGGGGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCATGTCCAATGTATAGATTCTTGGCTTTTGAACAGACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCACTGATTCAATTGAATTGA

Protein sequence

MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLIQLN

Homology

[Close]

BLAST of CmUC01G012460.1 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 2.5e-41
Identity = 96/136 (70.59%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLE 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLE
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLG-------KNLSNQDLE 60

Query: 61  KLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPIC 120
           KLPCYEYK  +      +++ECVVCLE FK GERCRLLPNC HSFHV+CIDSWLL  PIC
Sbjct: 61  KLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPIC 120

Query: 121 PICRTFAAALPKISLI 131
           PICRT  AA+PK  L+
Sbjct: 121 PICRT-CAAVPKFGLV 128

[Close]

BLAST of CmUC01G012460.1 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 7.3e-41
Identity = 95/136 (69.85%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLE 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLE
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLG-------KNLSNQDLE 60

Query: 61  KLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPIC 120
           KLPCYEYK  +      +++ECVVCLE FK GERCRLLPNC HSFHV+CIDSWLL  PIC
Sbjct: 61  KLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPIC 120

Query: 121 PICRTFAAALPKISLI 131
           PICRT  A +PK  L+
Sbjct: 121 PICRT-CAVVPKFGLV 128

[Close]

BLAST of CmUC01G012460.1 vs. NCBI nr
Match: KCW49298.1 (hypothetical protein EUGRSUZ_K02856 [Eucalyptus grandis])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 79/123 (64.23%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLE 60
           MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+
Sbjct: 1   MVMEIIISVVLLFMGIAVLVVIHVCIVGRAFR-EGGGFSRGLVQRNSNSAASKLSSEDLK 60

Query: 61  KLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPI 120
           KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC H FH QCIDSWLL   ICP+
Sbjct: 61  KLPCFEYGSGDKASDRDEDCAVCLENFKAGEKCRLLPNCKHCFHAQCIDSWLLKTAICPV 120

[Close]

BLAST of CmUC01G012460.1 vs. NCBI nr
Match: XP_018720505.1 (RING-H2 finger protein ATL74 [Eucalyptus grandis])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 79/123 (64.23%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLE 60
           MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+
Sbjct: 67  MVMEIIISVVLLFMGIAVLVVIHVCIVGRAFR-EGGGFSRGLVQRNSNSAASKLSSEDLK 126

Query: 61  KLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPI 120
           KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC H FH QCIDSWLL   ICP+
Sbjct: 127 KLPCFEYGSGDKASDRDEDCAVCLENFKAGEKCRLLPNCKHCFHAQCIDSWLLKTAICPV 186

[Close]

BLAST of CmUC01G012460.1 vs. NCBI nr
Match: KAE8124192.1 (hypothetical protein FH972_019098 [Carpinus fangiana])

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-32
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 3   MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKL 62
           ME+VVS VLL VGI VLV+IH+CI GRA RG    I  +N     + G KR S  DLE+L
Sbjct: 6   MELVVSVVLLFVGIVVLVIIHICIAGRAFRGGNHQIQGNNMVQRGSNGTKRMSTGDLERL 65

Query: 63  PCYEYKMRD---LEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRT 122
           PC++YK  +     ++C VCL+NFK G++CRLLPNC HSFHVQCIDSWLL  PICPICRT
Sbjct: 66  PCFDYKAAEKGSSSVDCAVCLDNFKMGDKCRLLPNCRHSFHVQCIDSWLLKTPICPICRT 125

Query: 123 FAAALPKISLI 131
                PKI +I
Sbjct: 126 IVNP-PKIDVI 135

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-13
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 36  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKMRDLEME---CVVCLENFKN 95
           +G   +N+NG +N        G     +  ++ +  Y+Y+  D  +E   C VCL  F+ 
Sbjct: 109 QGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQE 168

Query: 96  GERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLIQL 133
            E  RLLP CNH+FHV CID+WL +   CP+CR F      + ++ L
Sbjct: 169 NESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDL 215

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 41  SNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECVVCLENFKNGERCRLLPNC 100
           S    +SN G+K   K+ L   P   Y  R++ +     ECV+CL +F +GE+ RLLP C
Sbjct: 99  STPRSSSNKGIK---KKALRMFPVVSYS-REMNLPGIGEECVICLSDFVSGEQLRLLPKC 158

Query: 101 NHSFHVQCIDSWLLNRPICPICR 119
           NH FHV+CID WL +   CP CR
Sbjct: 159 NHGFHVRCIDKWLQHHLTCPKCR 177

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-12
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 42  NSNGNSNYGMKRFSKEDLEKLP--CYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSF 101
           ++N N   G+K   K  L+ +P   Y  +++    EC++CL +F  GE  R+LP CNH F
Sbjct: 80  DTNANVAKGIK---KRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGF 139

Query: 102 HVQCIDSWLLNRPICPICR 119
           HV+CID+WLL+   CP CR
Sbjct: 140 HVKCIDTWLLSHSSCPTCR 155

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-12
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 31  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGE 90
           L   GEG + S    ++N      ++  ++ +  Y+YK  D  +   +C VCL  F+  E
Sbjct: 96  LNHNGEGFFSSTQRISTN--GDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENE 155

Query: 91  RCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL 125
             RLLP CNH+FH+ CID+WL +   CP+CR F   +
Sbjct: 156 SLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGV 190

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 5.7e-12
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 59  LEKLPCYEYK----MRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPIC 118
           ++ LP + YK    +++   +C VCL  F+  ++ RLLP C+H+FH+ CID+WLL+   C
Sbjct: 113 IDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTC 172

Query: 119 PICRT 120
           P+CR+
Sbjct: 173 PLCRS 177

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 96/136 (70.59%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLE 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLE
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLG-------KNLSNQDLE 60

Query: 61  KLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPIC 120
           KLPCYEYK  +      +++ECVVCLE FK GERCRLLPNC HSFHV+CIDSWLL  PIC
Sbjct: 61  KLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPIC 120

Query: 121 PICRTFAAALPKISLI 131
           PICRT  AA+PK  L+
Sbjct: 121 PICRT-CAAVPKFGLV 128

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.5e-41
Identity = 95/136 (69.85%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLE 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLE
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLG-------KNLSNQDLE 60

Query: 61  KLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPIC 120
           KLPCYEYK  +      +++ECVVCLE FK GERCRLLPNC HSFHV+CIDSWLL  PIC
Sbjct: 61  KLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPIC 120

Query: 121 PICRTFAAALPKISLI 131
           PICRT  A +PK  L+
Sbjct: 121 PICRT-CAVVPKFGLV 128

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy TrEMBL
Match: A0A059A647 (RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02856 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.0e-33
Identity = 79/123 (64.23%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLE 60
           MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+
Sbjct: 1   MVMEIIISVVLLFMGIAVLVVIHVCIVGRAFR-EGGGFSRGLVQRNSNSAASKLSSEDLK 60

Query: 61  KLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPI 120
           KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC H FH QCIDSWLL   ICP+
Sbjct: 61  KLPCFEYGSGDKASDRDEDCAVCLENFKAGEKCRLLPNCKHCFHAQCIDSWLLKTAICPV 120

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy TrEMBL
Match: A0A5N6RPJ5 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019098 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.0e-32
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 3   MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKL 62
           ME+VVS VLL VGI VLV+IH+CI GRA RG    I  +N     + G KR S  DLE+L
Sbjct: 6   MELVVSVVLLFVGIVVLVIIHICIAGRAFRGGNHQIQGNNMVQRGSNGTKRMSTGDLERL 65

Query: 63  PCYEYKMRD---LEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRT 122
           PC++YK  +     ++C VCL+NFK G++CRLLPNC HSFHVQCIDSWLL  PICPICRT
Sbjct: 66  PCFDYKAAEKGSSSVDCAVCLDNFKMGDKCRLLPNCRHSFHVQCIDSWLLKTPICPICRT 125

Query: 123 FAAALPKISLI 131
                PKI +I
Sbjct: 126 IVNP-PKIDVI 135

[Close]

BLAST of CmUC01G012460.1 vs. ExPASy TrEMBL
Match: W9RES1 (RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.7e-32
Identity = 73/123 (59.35%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 3   MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKL 62
           MEIV+S +LL VGIAVLVVIH+CIVGRA     +G   +N+N N     KR S EDL+ +
Sbjct: 1   MEIVISVILLFVGIAVLVVIHICIVGRAFGRGNQGANNNNNNNNILGSNKRMSSEDLKMI 60

Query: 63  PCYEYKMRDLE----MECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR 122
           PC++Y M   +    ++C VCLENFK G++CRLLP+CNHSFH QCIDSWLL  P+CPICR
Sbjct: 61  PCFDYNMSGEKESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTPVCPICR 120

[Close]

BLAST of CmUC01G012460.1 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-14
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 36  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKMRDLEME---CVVCLENFKN 95
           +G   +N+NG +N        G     +  ++ +  Y+Y+  D  +E   C VCL  F+ 
Sbjct: 109 QGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQE 168

Query: 96  GERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLIQL 133
            E  RLLP CNH+FHV CID+WL +   CP+CR F      + ++ L
Sbjct: 169 NESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDL 215

[Close]

BLAST of CmUC01G012460.1 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 8.1e-14
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 41  SNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECVVCLENFKNGERCRLLPNC 100
           S    +SN G+K   K+ L   P   Y  R++ +     ECV+CL +F +GE+ RLLP C
Sbjct: 99  STPRSSSNKGIK---KKALRMFPVVSYS-REMNLPGIGEECVICLSDFVSGEQLRLLPKC 158

Query: 101 NHSFHVQCIDSWLLNRPICPICR 119
           NH FHV+CID WL +   CP CR
Sbjct: 159 NHGFHVRCIDKWLQHHLTCPKCR 177

[Close]

BLAST of CmUC01G012460.1 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 42  NSNGNSNYGMKRFSKEDLEKLP--CYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSF 101
           ++N N   G+K   K  L+ +P   Y  +++    EC++CL +F  GE  R+LP CNH F
Sbjct: 80  DTNANVAKGIK---KRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGF 139

Query: 102 HVQCIDSWLLNRPICPICR 119
           HV+CID+WLL+   CP CR
Sbjct: 140 HVKCIDTWLLSHSSCPTCR 155

[Close]

BLAST of CmUC01G012460.1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-13
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 31  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGE 90
           L   GEG + S    ++N      ++  ++ +  Y+YK  D  +   +C VCL  F+  E
Sbjct: 96  LNHNGEGFFSSTQRISTN--GDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENE 155

Query: 91  RCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL 125
             RLLP CNH+FH+ CID+WL +   CP+CR F   +
Sbjct: 156 SLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGV 190

[Close]

BLAST of CmUC01G012460.1 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-13
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 5   IVVSAVLLVVGIAVLVVIHV--CIVGRALRGEGEGIWRSNSNGNSNYG----MKRFSKED 64
           +++ A LL   I  L +     C++    R   +    + SN N+N G         K+ 
Sbjct: 34  VIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATGLKKQA 93

Query: 65  LEKLPCYEYKMRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICP 119
           L+++P   Y    ++M   EC++CL +F++GE+ R+LP CNH FHV+CID+WLL+R  CP
Sbjct: 94  LKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCP 153

The following BLAST results are available for this feature:

BLAST of CmUC01G012460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994122.1	2.5e-41	70.59	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022954431.1	7.3e-41	69.85	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
KCW49298.1	1.2e-32	64.23	hypothetical protein EUGRSUZ_K02856 [Eucalyptus grandis]	[more]
XP_018720505.1	1.2e-32	64.23	RING-H2 finger protein ATL74 [Eucalyptus grandis]	[more]
KAE8124192.1	2.1e-32	58.78	hypothetical protein FH972_019098 [Carpinus fangiana]	[more]

BLAST of CmUC01G012460.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRQ8	6.7e-13	34.58	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q6NML0	1.1e-12	44.58	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
Q9FLC6	3.3e-12	43.04	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LF64	4.3e-12	36.08	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q940Q4	5.7e-12	41.54	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]

BLAST of CmUC01G012460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUU5	1.2e-41	70.59	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6J1GQW8	3.5e-41	69.85	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
A0A059A647	6.0e-33	64.23	RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K0...	[more]
A0A5N6RPJ5	1.0e-32	58.78	RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0190...	[more]
W9RES1	8.7e-32	59.35	RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV...	[more]

BLAST of CmUC01G012460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03550.1	4.8e-14	34.58	RING/U-box superfamily protein	[more]
AT1G49210.1	8.1e-14	44.58	RING/U-box superfamily protein	[more]
AT5G05280.1	2.4e-13	43.04	RING/U-box superfamily protein	[more]
AT5G17600.1	3.1e-13	36.08	RING/U-box superfamily protein	[more]
AT3G10910.1	4.0e-13	35.77	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 76..117 e-value: 2.9E-7 score: 40.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 75..118 e-value: 3.9E-13 score: 49.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 76..118 score: 12.474524
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 40..122 e-value: 4.2E-20 score: 73.2
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..122
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..122
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 75..121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC01G012460	CmUC01G012460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G012460.1-exon	CmUC01G012460.1-exon-CmU531Chr01:24802329..24802730	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G012460.1-cds	CmUC01G012460.1-cds-CmU531Chr01:24802329..24802730	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC01G012460.1	CmUC01G012460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane