Clc11G02230.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G02230.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Suppressor protein SRP40-like
Location	ClcChr11: 2141631 .. 2142686 (+)
Sequence length	918
RNA-Seq Expression	Clc11G02230.1
Synteny	Clc11G02230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAAATCAATTTGCAACCATAAATACTATACACTATCAACCAAAATTCTTATCATCATTTAAATAATATAAACATTTATATATATGTCTATGGTGATCCTACTCACCCTATTTATTATAATAATTCAAACCCACCTAAAAGAAACATTTTTTGGTCAATACCCCTACATTTATGGCTTCTATTTTTAAACTCCTTCCCTTATTCCTTTTCTTCTTCAAATTCTACCAAATTTTCTTACAATTTTATTTCTTGGACATAGACATGGAAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAGGGAACTCAGTTGGGTGATTATGAAAACTAGAGAAAATGAAGTTTTCGAAGCTTCTACTTCTACTATTGATTCTTCTTTAGAGAATTCTATAAACTCAATTGAATCCTCTTCGTCAGAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAACGTTTCGTCATTGTCATTGTCGCCATCAGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGTAAGAAGAGATATATGTAAAGGGAAAAAAAACCCTAAAAGTCAGAAAAAAAGAACTTTTTTCTTTTCTGTTTTTGTTTTTGGTTTACAAATGATCAAACTAATATCCCTTTTAATAATTCAACTTTGGGTTTTGCAGGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGCAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAGAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGATGCTTATTTAGAGGGATAGGCCTTTTTCTTTTTCTTTCTCAATGATTTGAGGTTAAAGTGTTATTTTTGTGGAAGAGTGTTTGAAATAATGGTTC

mRNA sequence

AGCAAATCAATTTGCAACCATAAATACTATACACTATCAACCAAAATTCTTATCATCATTTAAATAATATAAACATTTATATATATGTCTATGGTGATCCTACTCACCCTATTTATTATAATAATTCAAACCCACCTAAAAGAAACATTTTTTGGTCAATACCCCTACATTTATGGCTTCTATTTTTAAACTCCTTCCCTTATTCCTTTTCTTCTTCAAATTCTACCAAATTTTCTTACAATTTTATTTCTTGGACATAGACATGGAAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAGGGAACTCAGTTGGGTGATTATGAAAACTAGAGAAAATGAAGTTTTCGAAGCTTCTACTTCTACTATTGATTCTTCTTTAGAGAATTCTATAAACTCAATTGAATCCTCTTCGTCAGAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAACGTTTCGTCATTGTCATTGTCGCCATCAGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGCAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAGAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGATGCTTATTTAGAGGGATAGGCCTTTTTCTTTTTCTTTCTCAATGATTTGAGGTTAAAGTGTTATTTTTGTGGAAGAGTGTTTGAAATAATGGTTC

Coding sequence (CDS)

ATGGCTTCTATTTTTAAACTCCTTCCCTTATTCCTTTTCTTCTTCAAATTCTACCAAATTTTCTTACAATTTTATTTCTTGGACATAGACATGGAAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAGGGAACTCAGTTGGGTGATTATGAAAACTAGAGAAAATGAAGTTTTCGAAGCTTCTACTTCTACTATTGATTCTTCTTTAGAGAATTCTATAAACTCAATTGAATCCTCTTCGTCAGAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAACGTTTCGTCATTGTCATTGTCGCCATCAGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGCAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAGAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA

Protein sequence

MASIFKLLPLFLFFFKFYQIFLQFYFLDIDMEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKRVNNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVSKRNNRLFDSHS

Homology

[Close]

BLAST of Clc11G02230.1 vs. NCBI nr
Match: XP_038890684.1 (uncharacterized protein LOC120080185 [Benincasa hispida])

HSP 1 Score: 269.2 bits (687), Expect = 3.0e-68
Identity = 158/185 (85.41%), Postives = 169/185 (91.35%), Query Frame = 0


Query: 31  MEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDA 90
           M  KEK+EAFEAME  EL+WVIM+TRE+EVFEASTSTI SS ENSINSIES SSELLEDA
Sbjct: 1   MGGKEKMEAFEAMELTELNWVIMETRESEVFEASTSTIGSSSENSINSIESLSSELLEDA 60

Query: 91  SSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKS 150
           SSSS  SN+SSLSLSPS+SSS+GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSLAS KS
Sbjct: 61  SSSSFASNLSSLSLSPSLSSSDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLASVKS 120

Query: 151 LEDLAKRV-NNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVSKRNN 210
           LEDLAKRV NNISQRK+MKSCKSYGGG DAQK  YSPKPLI+KRVSKG SLLSP+SKRNN
Sbjct: 121 LEDLAKRVNNNISQRKKMKSCKSYGGGLDAQKPYYSPKPLISKRVSKG-SLLSPISKRNN 180

Query: 211 -RLFD 214
            RLFD
Sbjct: 181 IRLFD 184

[Close]

BLAST of Clc11G02230.1 vs. NCBI nr
Match: XP_022154740.1 (uncharacterized protein LOC111021921 [Momordica charantia])

HSP 1 Score: 228.4 bits (581), Expect = 5.9e-56
Identity = 144/190 (75.79%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 29  IDMEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLE 88
           +D+  KEK+EAFEAME RELSWVIMK+ E+EV EAS ST+DSS ENSI+SIES SSEL E
Sbjct: 1   MDIGGKEKLEAFEAMELRELSWVIMKSGEDEVCEASISTMDSSSENSISSIESFSSELAE 60

Query: 89  DASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASA 148
           DASSSS TSN S  S SP +SSS GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSLASA
Sbjct: 61  DASSSS-TSNPSLSSFSP-LSSSSGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLASA 120

Query: 149 KSLEDLAKRVNN---ISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVS 208
           KSLEDLAKRVNN   I QRK+MK CKSYGGG DAQ+ SYSPK  IAK+ SK       V 
Sbjct: 121 KSLEDLAKRVNNNIIIPQRKKMKCCKSYGGGLDAQR-SYSPKASIAKKPSKA------VC 180

Query: 209 KRNNRLFDSH 216
           KRNNRLFDSH
Sbjct: 181 KRNNRLFDSH 181

[Close]

BLAST of Clc11G02230.1 vs. NCBI nr
Match: KAA0061522.1 (suppressor protein SRP40-like [Cucumis melo var. makuwa] >TYK10750.1 suppressor protein SRP40-like [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 2.9e-55
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 0


Query: 31  MEDKEK-IEAFEAMEFRELSWVIMKTRENEVFEA-STSTIDSSLENSINSIESSSSELLE 90
           ME KE+ IE FEAME REL+WVIM++RE+EV EA STSTIDSS   S+NSIESS+SELLE
Sbjct: 1   MEGKEQIIEDFEAMELRELNWVIMESREDEVLEAFSTSTIDSS---SMNSIESSASELLE 60

Query: 91  DASSSSLTSNV-SSLSLSPSVSSS-EGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLA 150
           DASSSSLTSN  SSLSLSPS+SSS +GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSLA
Sbjct: 61  DASSSSLTSNFSSSLSLSPSLSSSDDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLA 120

Query: 151 SAKSLEDLAKRVNNIS------QRKRMKSCKSYGGGFDAQKSS--YSPKPLIAKRVSKGS 210
           S KSLEDLAKRVN  +      QRK+MK CKSYGG  DAQKSS  +SPKPLIAK+VSK S
Sbjct: 121 SVKSLEDLAKRVNYNNNNYYNYQRKKMKCCKSYGGSLDAQKSSNYHSPKPLIAKKVSKPS 180

Query: 211 SLLSPV-SKRNNRLF 213
           SLLS V SKRNNR F
Sbjct: 181 SLLSSVCSKRNNRSF 192

[Close]

BLAST of Clc11G02230.1 vs. NCBI nr
Match: XP_008458957.1 (PREDICTED: uncharacterized protein LOC103498213 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 2.9e-55
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 0


Query: 31  MEDKEK-IEAFEAMEFRELSWVIMKTRENEVFEA-STSTIDSSLENSINSIESSSSELLE 90
           ME KE+ IE FEAME REL+WVIM++RE+EV EA STSTIDSS   S+NS+ESS+SELLE
Sbjct: 1   MEGKEQIIEDFEAMELRELNWVIMESREDEVLEAFSTSTIDSS---SMNSMESSASELLE 60

Query: 91  DASSSSLTSNV-SSLSLSPSVSSS-EGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLA 150
           DASSSSLTSN  SSLSLSPS+SSS +GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSLA
Sbjct: 61  DASSSSLTSNFSSSLSLSPSLSSSDDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLA 120

Query: 151 SAKSLEDLAKRVN------NISQRKRMKSCKSYGGGFDAQKSS--YSPKPLIAKRVSKGS 210
           S KSLEDLAKRVN        SQRK+MK CKSYGG  DAQKSS  +SPKPLIAK+VSK S
Sbjct: 121 SVKSLEDLAKRVNYNNNNYYNSQRKKMKCCKSYGGSLDAQKSSNYHSPKPLIAKKVSKPS 180

Query: 211 SLLSPV-SKRNNRLF 213
           SLLS V SKRNNR F
Sbjct: 181 SLLSSVCSKRNNRSF 192

[Close]

BLAST of Clc11G02230.1 vs. NCBI nr
Match: XP_004141029.1 (uncharacterized protein LOC101219805 [Cucumis sativus] >KGN60571.1 hypothetical protein Csa_019427 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-52
Identity = 144/197 (73.10%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 31  MEDKEKI-EAFEAM-EFRELSWVIMKTRENEVFE--ASTSTIDSSLENSINSIESSSSEL 90
           ME KEKI E FEAM +FR+L+WVIM+TRE+EV E  +++STIDSS   S+NSIESS+SEL
Sbjct: 1   MEGKEKILEDFEAMDQFRKLNWVIMETREDEVLEEASTSSTIDSS---SMNSIESSASEL 60

Query: 91  LEDASSSSLTSN-VSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSL 150
           LEDASSSSLTSN  SSLSLSP   S +GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSL
Sbjct: 61  LEDASSSSLTSNSSSSLSLSP---SDDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSL 120

Query: 151 ASAKSLEDLAKRVNN----ISQRKRMKSCKSYGGGFDAQKSS--YSPKPLIAKRVSKGSS 210
           AS KSLEDLAKR+N+     SQRK++K CKSYGG  ++QKSS  YSPKPLIAK+VS+ SS
Sbjct: 121 ASVKSLEDLAKRMNHNNNYNSQRKKIKCCKSYGGSLESQKSSNYYSPKPLIAKKVSRPSS 180

Query: 211 LLSPV-SKRNNRLFDSH 216
           LLS V +KR+NRLFD+H
Sbjct: 181 LLSSVCTKRSNRLFDAH 191

[Close]

BLAST of Clc11G02230.1 vs. ExPASy TrEMBL
Match: A0A6J1DKH4 (uncharacterized protein LOC111021921 OS=Momordica charantia OX=3673 GN=LOC111021921 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.8e-56
Identity = 144/190 (75.79%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 29  IDMEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLE 88
           +D+  KEK+EAFEAME RELSWVIMK+ E+EV EAS ST+DSS ENSI+SIES SSEL E
Sbjct: 1   MDIGGKEKLEAFEAMELRELSWVIMKSGEDEVCEASISTMDSSSENSISSIESFSSELAE 60

Query: 89  DASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASA 148
           DASSSS TSN S  S SP +SSS GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSLASA
Sbjct: 61  DASSSS-TSNPSLSSFSP-LSSSSGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLASA 120

Query: 149 KSLEDLAKRVNN---ISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVS 208
           KSLEDLAKRVNN   I QRK+MK CKSYGGG DAQ+ SYSPK  IAK+ SK       V 
Sbjct: 121 KSLEDLAKRVNNNIIIPQRKKMKCCKSYGGGLDAQR-SYSPKASIAKKPSKA------VC 180

Query: 209 KRNNRLFDSH 216
           KRNNRLFDSH
Sbjct: 181 KRNNRLFDSH 181

[Close]

BLAST of Clc11G02230.1 vs. ExPASy TrEMBL
Match: A0A5A7V023 (Suppressor protein SRP40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00630 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.4e-55
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 0


Query: 31  MEDKEK-IEAFEAMEFRELSWVIMKTRENEVFEA-STSTIDSSLENSINSIESSSSELLE 90
           ME KE+ IE FEAME REL+WVIM++RE+EV EA STSTIDSS   S+NSIESS+SELLE
Sbjct: 1   MEGKEQIIEDFEAMELRELNWVIMESREDEVLEAFSTSTIDSS---SMNSIESSASELLE 60

Query: 91  DASSSSLTSNV-SSLSLSPSVSSS-EGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLA 150
           DASSSSLTSN  SSLSLSPS+SSS +GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSLA
Sbjct: 61  DASSSSLTSNFSSSLSLSPSLSSSDDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLA 120

Query: 151 SAKSLEDLAKRVNNIS------QRKRMKSCKSYGGGFDAQKSS--YSPKPLIAKRVSKGS 210
           S KSLEDLAKRVN  +      QRK+MK CKSYGG  DAQKSS  +SPKPLIAK+VSK S
Sbjct: 121 SVKSLEDLAKRVNYNNNNYYNYQRKKMKCCKSYGGSLDAQKSSNYHSPKPLIAKKVSKPS 180

Query: 211 SLLSPV-SKRNNRLF 213
           SLLS V SKRNNR F
Sbjct: 181 SLLSSVCSKRNNRSF 192

[Close]

BLAST of Clc11G02230.1 vs. ExPASy TrEMBL
Match: A0A1S3C929 (uncharacterized protein LOC103498213 OS=Cucumis melo OX=3656 GN=LOC103498213 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.4e-55
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 0


Query: 31  MEDKEK-IEAFEAMEFRELSWVIMKTRENEVFEA-STSTIDSSLENSINSIESSSSELLE 90
           ME KE+ IE FEAME REL+WVIM++RE+EV EA STSTIDSS   S+NS+ESS+SELLE
Sbjct: 1   MEGKEQIIEDFEAMELRELNWVIMESREDEVLEAFSTSTIDSS---SMNSMESSASELLE 60

Query: 91  DASSSSLTSNV-SSLSLSPSVSSS-EGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLA 150
           DASSSSLTSN  SSLSLSPS+SSS +GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSLA
Sbjct: 61  DASSSSLTSNFSSSLSLSPSLSSSDDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLA 120

Query: 151 SAKSLEDLAKRVN------NISQRKRMKSCKSYGGGFDAQKSS--YSPKPLIAKRVSKGS 210
           S KSLEDLAKRVN        SQRK+MK CKSYGG  DAQKSS  +SPKPLIAK+VSK S
Sbjct: 121 SVKSLEDLAKRVNYNNNNYYNSQRKKMKCCKSYGGSLDAQKSSNYHSPKPLIAKKVSKPS 180

Query: 211 SLLSPV-SKRNNRLF 213
           SLLS V SKRNNR F
Sbjct: 181 SLLSSVCSKRNNRSF 192

[Close]

BLAST of Clc11G02230.1 vs. ExPASy TrEMBL
Match: A0A0A0LKQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000790 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 5.0e-53
Identity = 144/197 (73.10%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 31  MEDKEKI-EAFEAM-EFRELSWVIMKTRENEVFE--ASTSTIDSSLENSINSIESSSSEL 90
           ME KEKI E FEAM +FR+L+WVIM+TRE+EV E  +++STIDSS   S+NSIESS+SEL
Sbjct: 1   MEGKEKILEDFEAMDQFRKLNWVIMETREDEVLEEASTSSTIDSS---SMNSIESSASEL 60

Query: 91  LEDASSSSLTSN-VSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSL 150
           LEDASSSSLTSN  SSLSLSP   S +GPLYELSELMA+LPIKRGLSKFYNGKSQSFTSL
Sbjct: 61  LEDASSSSLTSNSSSSLSLSP---SDDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSL 120

Query: 151 ASAKSLEDLAKRVNN----ISQRKRMKSCKSYGGGFDAQKSS--YSPKPLIAKRVSKGSS 210
           AS KSLEDLAKR+N+     SQRK++K CKSYGG  ++QKSS  YSPKPLIAK+VS+ SS
Sbjct: 121 ASVKSLEDLAKRMNHNNNYNSQRKKIKCCKSYGGSLESQKSSNYYSPKPLIAKKVSRPSS 180

Query: 211 LLSPV-SKRNNRLFDSH 216
           LLS V +KR+NRLFD+H
Sbjct: 181 LLSSVCTKRSNRLFDAH 191

[Close]

BLAST of Clc11G02230.1 vs. ExPASy TrEMBL
Match: A0A6J1FBB9 (uncharacterized protein LOC111443888 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443888 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 130/194 (67.01%), Postives = 148/194 (76.29%), Query Frame = 0


Query: 29  IDMEDKEKIEAFE---AMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSE 88
           +DM  K+ IEAFE   AME +ELS V+++TRE++V EAS ST     ENSI+S ES SSE
Sbjct: 1   MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASIST-----ENSISSFESFSSE 60

Query: 89  LLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSL 148
           LLEDASS+S TSN+S  SLS S SS  GPLYELSELM +LPIKRGLSKFYNGKSQSFTSL
Sbjct: 61  LLEDASSTS-TSNLSLSSLSSSQSS--GPLYELSELMDNLPIKRGLSKFYNGKSQSFTSL 120

Query: 149 ASAKSLEDLAKRVNN----ISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLL 208
           ASAKSLEDLAK+VNN     SQ+K+MK CKSYGGG DAQ+ SYSPKPLIAK+        
Sbjct: 121 ASAKSLEDLAKKVNNNNNITSQKKKMKCCKSYGGGLDAQR-SYSPKPLIAKK-------- 175

Query: 209 SPVSKRNNRLFDSH 216
              SKR +RLF SH
Sbjct: 181 --ASKRRSRLFVSH 175

[Close]

BLAST of Clc11G02230.1 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 )

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-16
Identity = 71/174 (40.80%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 45  FRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSLSL 104
           F+E++ + +K   N ++E  T   +   E+ +  + ++ S+  +++SS SL+S++ S   
Sbjct: 2   FKEMN-LNLKQMGNMIYEDPTRIQEE--EDIVQEVSTTFSDEEDNSSSCSLSSSMCSDFT 61

Query: 105 SP------SVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKR- 164
                   S SSS GPL +LS+LM+HLPIKRGLSKFY GKSQSFTSL + KSLEDL KR 
Sbjct: 62  EDDDDDDVSSSSSNGPLEDLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMKRG 121

Query: 165 VNNISQRKRMKSCKSYGGGFD-AQKSSYSPKPLIAKRVSK-GSSLLSPVSKRNN 210
             + +   + KS +S GG  D + K  +SPK  I+K+ ++  SS+LS +++R +
Sbjct: 122 FKSRNYGAKRKSSRSTGGILDQSYKRVFSPKATISKKPNRTPSSVLSCLARRRH 172

[Close]

BLAST of Clc11G02230.1 vs. TAIR 10
Match: AT4G26288.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-11
Identity = 65/161 (40.37%), Postives = 84/161 (52.17%), Query Frame = 0


Query: 43  MEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSL 102
           M  R+ + +     E  V   S S   S+  +S +SI   SS+L EDASSSS        
Sbjct: 1   MNIRDGNLISTTKEEEGVIGVSGS---SAKVSSSSSISMCSSDLTEDASSSS-------- 60

Query: 103 SLSPSVSSSEGPLYELSELMAHLPI----KRGLSKFYNGKSQSFTSLASAKSLEDLAKRV 162
             S S SSS GP  +LS+L++ LPI    K GLSK+Y GKSQSFTSLA+  SL+DL KR 
Sbjct: 61  --SSSSSSSNGPFDDLSDLISQLPIIQVKKGGLSKYYKGKSQSFTSLANVTSLQDLVKR- 120

Query: 163 NNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSS 200
                  R KSC         +   Y PK  I+ + ++ SS
Sbjct: 121 -----GSRTKSCCK-------RDYFYGPKATISMKATRTSS 135

[Close]

BLAST of Clc11G02230.1 vs. TAIR 10
Match: AT3G43850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 109 SSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKSL--EDLAKRVNNISQRKR 167
           SS  GPL  +  L   LPIKR +SKFY GKS+SF SL+   SL  +DL K  N  S+R+R
Sbjct: 46  SSYNGPLDMMESLEEALPIKRAISKFYKGKSKSFMSLSETSSLPVKDLTKPENLYSRRRR 105

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BLAST of Clc11G02230.1 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 7.2e-04
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 61  FEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSE 120
           F  S S  DSS  +S +S  SSS     D    S          +   S  +GPL  +  
Sbjct: 23  FSPSPSPSDSS--SSPSSSASSSIGRNSDDGEKSSEDGGDDAGENEVESPYKGPLEMMES 82

Query: 121 LMAHLPIKRGLSKFYNGKSQSFT--------SLASAKSLEDLAKRVNNISQRKRMKSC 171
           L   LP+++G+SK+Y+GKS+SFT        +L S+ S++DLAK  N  S+R+R   C
Sbjct: 83  LEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLC 138

The following BLAST results are available for this feature:

BLAST of Clc11G02230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890684.1	3.0e-68	85.41	uncharacterized protein LOC120080185 [Benincasa hispida]	[more]
XP_022154740.1	5.9e-56	75.79	uncharacterized protein LOC111021921 [Momordica charantia]	[more]
KAA0061522.1	2.9e-55	77.44	suppressor protein SRP40-like [Cucumis melo var. makuwa] >TYK10750.1 suppressor ...	[more]
XP_008458957.1	2.9e-55	77.44	PREDICTED: uncharacterized protein LOC103498213 [Cucumis melo]	[more]
XP_004141029.1	1.0e-52	73.10	uncharacterized protein LOC101219805 [Cucumis sativus] >KGN60571.1 hypothetical ...	[more]

BLAST of Clc11G02230.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G02230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKH4	2.8e-56	75.79	uncharacterized protein LOC111021921 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7V023	1.4e-55	77.44	Suppressor protein SRP40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3C929	1.4e-55	77.44	uncharacterized protein LOC103498213 OS=Cucumis melo OX=3656 GN=LOC103498213 PE=...	[more]
A0A0A0LKQ7	5.0e-53	73.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000790 PE=4 SV=1	[more]
A0A6J1FBB9	1.1e-44	67.01	uncharacterized protein LOC111443888 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Clc11G02230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56550.1	1.7e-16	40.80	oxidative stress 3	[more]
AT4G26288.1	8.0e-11	40.37	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G43850.1	1.6e-06	51.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G21940.1	7.2e-04	35.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..216
None	No IPR available	PANTHER	PTHR33172	OS08G0516900 PROTEIN	coord: 42..212
None	No IPR available	PANTHER	PTHR33172:SF45	EMB\|CAB83157.1	coord: 42..212

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G02230	Clc11G02230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G02230.1-exon	Clc11G02230.1-exon-ClcChr11:2141631..2142185	exon
Clc11G02230.1-exon	Clc11G02230.1-exon-ClcChr11:2142324..2142686	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G02230.1-five_prime_utr	Clc11G02230.1-five_prime_utr-ClcChr11:2141631..2141802	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G02230.1-cds	Clc11G02230.1-cds-ClcChr11:2141803..2142185	CDS
Clc11G02230.1-cds	Clc11G02230.1-cds-ClcChr11:2142324..2142591	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G02230.1-three_prime_utr	Clc11G02230.1-three_prime_utr-ClcChr11:2142592..2142686	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G02230.1	Clc11G02230.1-protein	polypeptide