Clc11G00910.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G00910.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Sm domain-containing protein
Location	ClcChr11: 1030657 .. 1035262 (+)
Sequence length	2334
RNA-Seq Expression	Clc11G00910.1
Synteny	Clc11G00910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAATCGACGACTCATGAGTTAATGTATGACATTTTACACCAAACGAAAATGATTTTCCATAAAATAAATTTTACAAAAAAAAAGAAAAAAAAGTATGAATAAATAAATAAATAAAGAGAGCAAAATAGTTTTGCCCTAACCTTCGTCTTCTTCTCTCTTTCACGATACTCTTTCGCTTTGAGTTTTCCCGACTACAACTCGTACTCTCACTCTCCATTCTCATCTATCTTTGCAGCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGGTATTATATCAAATATCGTTTCTTTAACATTCTCTTAGTTTCAATTTCTTTGTCGTATGCTTGATTCTTGAGAAATTTTCTGAATTGATATAATTTGTTTCAAATTTTCATTTTGGGAAATCTGACGCTGTTTTCTTGAAATCTGCTAATTTGTTTAAATTTCCAATTTTCGTTCATGTTTGTGTTTCATTTCGGTAGGCTCCTTGTTTATGTGAGAGAACCTTTTTTTTTCCTTCATTTTTTTGGATAGCTTTGTTCTGTTTGGAGTGTTTATATTCGACGGAGGTGAGCTTCATTGATTTTGGTGAATTTAAGTTTTTTGTAATTTAAGTTTCTACTAATTTTCTGACTATTCAAGATATTTGGAGAAATTTAATCTTTGAGGACTAGGGGTTTCGTGTTAGAGTTGTATTTATTAAGTTAACTTTTTATATTAAACATTTGTTGTTGGATTGAAATGGTGGGTATGAAAACTAAATTTTTCTTAAATGGCAAAAGTTTTGGGCTTCAGTAGATAGTTGTATGAATAAGGTGCAGTAGTGCGTATATTAGTATAGGTCTAAAACGAGAAAGTAGACCAAAACTCAGTGTGCTTAAAACTAATGTGACTGTTGCACATATGTCGAAACGAGCAGTCTGGATTCAGTTCTTAGTGTTGTAGAAAACTGTAATAAATGAAACAAAGTGCACCCCTAATGGTTTAGATGTTCATAGATTTCACAATTTCATGTGCACGTGCAGTTATTCAGTGGCATTTCTGTTTTCTGAACTCTAATATTTTCTATTTCAACAAATATCAAATCCGCACCCCCCCCCCCCCCCCAGTCTTGTTACTATTATCCATCTGGATGTTCTTTTTGTAACTCCATTTTGGGCTCTTGGGTTTTTACCCGCCCTTTCTTTTGTAATATTTCATACATGGATGACATATTTGTCTTCTCCACATTGTTCTTAATACTTCTTATCATGTCTACTTATACAGTTAGTATATTAAAAAGGTGAGTTAAAAGAAAGTTCCAATTAATGAATATTAATGGATCTTTCGAAAGAGATTGAATTCTCATCAAAGAATATTAATTGAATAAATTGGAAGTTAATTAAGAAGACTGATTGGAATCCATTTGGATGACTCAGGGTAATCAGAAGTTTGATTGGTGTGACAAAAACTGATGAAATTGATCTAAAAAAACAAACTAATTTAGAAATACAAAAGTAAACAAAAGGAATTTGCTTCTGTTTGATTTAGTTGCAGACAATTTTTTTCTCACTCCCTTATTAAATATTGCATATATATTGAGAAAGGATTGAGATTCATAAACCATGGTGCTATGGTTATTTGTATTCATGTATGCTTCAGATTTAAGAAAGCCACCGTATAATTGAATCTTTTTCACTTTCTAGCTTTTACATGATTATTGTTTGTGATTCTCTTTTATTGTTTAGGTTCCGTTTGGTAACAATTTTATTTTTAGGTTGCTATTTTTTAAATTTATGCTTGTTTTCTCCTAAATTACATATTGTGGTGTTAACATTTCTTGAAGAAACACTTGAATTATGAATCAAGTTCTAAAAACAAAAACAAGTTTTTGAAAACTAATTTTTTGTAGTTTTTAAATTTTTGCTTGGTTTTTGAAAACATTGATGGAAAGTAGATAACAAAAATAAAAATTTTTAGGTGGATGCAATATAGACGAGCTTTTATTTTGAAAAACATAAAACCAAAAACCAAATGATTATCAAATGGGGCCTTAGATGTTCATTGCCTCAATGGTTTCTCGTTTTCATTTCTGAGACCTGTAGAGTTTTCTGTCTTATCTCTTATTCCTTTAACTATGGGGGCATGTCATAGTTCGTTGAATGCTTGGTGTCTGTTGAGTCATTAGTGATAATTGCTCATTAGTCCTTTTATGTTGTTTGATGGTGTTGAATAAATTTGATTAATTATATCTGATCAGGTATAAAAAGTTGGTAGTGCAGATAGAAGAAAATTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTACTTTTCTTTTGCCTTGGTCCTTGGATAACTCTCTACCTGTTCTATTTGGTATTTTATTCTCAGAATTGTATCATTACTTTTAAGAATCTGTAGAAGTTCAGGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCACAAATCTTCCTTATTGACAAATGGTGTCATTAATCAACCCTTTTTTCGTTACTTTTAAGAATATTTAGACATTGAGGGAAAACAACACTTGGAAATGTTGAGGCACTATCCTTTTTTTGTTCATGAATCTTCCTTGTTAACAAATGGTGTCATTAGTCAACCCTTTTTATTTCCCTATAATCTCTTTCTTATGACCTTTGGACATTGTATGTACCATTCCATATGTTGTACAATTGTGTCCTTGAGTTCATATGATCTCTTTATCAATTCTTTGTTCTTCAAACTTGACTTGTTTGTAATTTTTTTTAACATAAACCGAGCTTTCATGGAGAAAAAGTGAAAGGATACAAAAGAGGCACAACAAAGTGCCCAAAAAGCTGAGCCAAAGATAAGACCTATTGGTGCCCACATATTCGTTACAGAAGTTCTTTGAAATTGAAAGTCCATGAAACTTAGCGAGAGTTTAGTAATGTAGGGAAGTTGTTATTGTGATTTGTTATGAATAGTCGGTTGGAAATGGTAAAGGTATGGATTGATTTAGTTGGCTCAACTCTCAAGTTTGAGTGGAGGGTTCAAGTTCCTCAAATTACTTGTATTCCACTCTTCCTTCATCTTTATCTTTCATTACTATTTTAGCTATTATTTTTGGTTCTATCACAATCACTGTTATGGCTATGCACACACCAAAAGTCTCCAGAATACGAAGGGGATTCTCACCATCAAGCAACCCAGAAATAGGTGTTTGAACCATCCCTGACAGCAATTAACTGGAGAAAAAGGGGGATCACCCAAAGAGATGGCTTTCCAAGGGTTCTTGAAAGTCCCTTTCAACCCTCTTCCCAAGGTTCATTCGAAGGGTGAGGGCCAAGGCGAAGTATTCAACTCCAAAGGAAAACACCACAACCATTTAGCCAAAACACCTCACTACAAATCCTCAAATTGCCAATACCCAACCCTAAACTCAATAGGTCTCATAACCCTCTCCCAGCTAACCAAATCTGAGCTGCCCCTCCCGTCAACACCCTACCATAGGAAATATGAACAATTTCTTTCACAAATGTTGTTTTGATTTTAAACATGACCATTTATTGTCCTTTGTATAGGACCTTTATCTTTTCTTGTGCAGTATAACTGTTGAAAACCGGATAAAATCTATGTTGAATTCTAATGTGAAGATCCCATTTGTTTCATTGTATAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGACGCTTTTATCCGCGGAAATAACGGTAGATATTGAAATAGCTTTGATAATCTCATCATCTTTTGTTGACTCTTGAGAATAATTTTAAGACTCGATTTGTTAATGCAGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCATCTTAGCGCATCTAAGAATCATGACAGGAAATGTGCATCCTTTGCAGTACGTTATGTTTCTTCCTTCAGTCTTATGCTGTAAAATGAGAGATCAATCGGAATTGGAATTGATTGAAATTGTATTTGTACAATGAAGTAGAAAATCCACCCATAGCGCCATGATGTGCTGTTCGTGTGCTTGTGAACAACTTCAATCAGAGAACTTGTTTTGTTAGAAATGGAATGCACATTATGATGAATTTTTGGATTTTTCTTTTATTGAAATTACTGATCTAATCTAATCTGCTCTCACATTTTTTTACATTCTTTGGTCTTCTGAGACTAAGTAACAAGTTTTTTTAGTCTACTTGTAGAGGTCGTGTATTGCCCTCAATCGTGCATTTGCTAAAGTTCCATTGCTTTCTTCTGTTCGAGCTAGAGTTATAATATTAGCTTGCGGCCATTTAAATAATTAGAGTGGATAAAATGAGTCACTGAATTAACAACAAATTTGATGTTTCCCGAGAAGACAAGGTACAAGGTGAATTTATGGGAGTGATTTGGAAATTGTTGAAATTTCATTATCAGCAAGTACGTGGGTTCAATTTAATGAAAATTTAAGTTTTCCCAA

mRNA sequence

ATGAGAGAATCGACGACTCATGAGTTAATCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGATAGAAGAAAATTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTACTTTTCTTTTGCCTTGGTCCTTGGATAACTCTCTACCTGTTCTATTTGGTATTTTATTCTCAGAATTGTATCATTACTTTTAAGAATCTGTAGAAGTTCAGGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCACAAATCTTCCTTATTGACAAATGGTGTCATTAATCAACCCTTTTTTCGTTACTTTTAAGAATATTTAGACATTGAGGGAAAACAACACTTGGAAATGTTGAGGCACTATCCTTTTTTTGTTCATGAATCTTCCTTGTTAACAAATGGTGTCATTAGTCAACCCTTTTTATTTCCCTATAATCTCTTTCTTATGACCTTTGGACATTGTATGTACCATTCCATATGTTGTACAATTGTGTCCTTGAGTTCATATGATCTCTTTATCAATTCTTTGTTCTTCAAACTTGACTTGTTTGTAATTTTTTTTAACATAAACCGAGCTTTCATGGAGAAAAAGTGAAAGGATACAAAAGAGGCACAACAAAGTGCCCAAAAAGCTGAGCCAAAGATAAGACCTATTGGTGCCCACATATTCGTTACAGAAGTTCTTTGAAATTGAAAGTCCATGAAACTTAGCGAGAGTTTAGTAATGTAGGGAAGTTGTTATTGTGATTTGTTATGAATAGTCGGTTGGAAATGGTAAAGGTATGGATTGATTTAGTTGGCTCAACTCTCAAGTTTGAGTGGAGGGTTCAAGTTCCTCAAATTACTTGTATTCCACTCTTCCTTCATCTTTATCTTTCATTACTATTTTAGCTATTATTTTTGGTTCTATCACAATCACTGTTATGGCTATGCACACACCAAAAGTCTCCAGAATACGAAGGGGATTCTCACCATCAAGCAACCCAGAAATAGGTGTTTGAACCATCCCTGACAGCAATTAACTGGAGAAAAAGGGGGATCACCCAAAGAGATGGCTTTCCAAGGGTTCTTGAAAGTCCCTTTCAACCCTCTTCCCAAGGTTCATTCGAAGGGTGAGGGCCAAGGCGAAGTATTCAACTCCAAAGGAAAACACCACAACCATTTAGCCAAAACACCTCACTACAAATCCTCAAATTGCCAATACCCAACCCTAAACTCAATAGGTCTCATAACCCTCTCCCAGCTAACCAAATCTGAGCTGCCCCTCCCGTCAACACCCTACCATAGGAAATATGAACAATTTCTTTCACAAATGTTGTTTTGATTTTAAACATGACCATTTATTGTCCTTTGTATAGGACCTTTATCTTTTCTTGTGCAGTATAACTGTTGAAAACCGGATAAAATCTATGTTGAATTCTAATGTGAAGATCCCATTTGTTTCATTGTATAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGACGCTTTTATCCGCGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCATCTTAGCGCATCTAAGAATCATGACAGGAAATGTGCATCCTTTGCAGTACGTTATGTTTCTTCCTTCAGTCTTATGCTGTAAAATGAGAGATCAATCGGAATTGGAATTGATTGAAATTGTATTTGTACAATGAAGTAGAAAATCCACCCATAGCGCCATGATGTGCTGTTCGTGTGCTTGTGAACAACTTCAATCAGAGAACTTGTTTTGTTAGAAATGGAATGCACATTATGATGAATTTTTGGATTTTTCTTTTATTGAAATTACTGATCTAATCTAATCTGCTCTCACATTTTTTTACATTCTTTGGTCTTCTGAGACTAAGTAACAAGTTTTTTTAGTCTACTTGTAGAGGTCGTGTATTGCCCTCAATCGTGCATTTGCTAAAGTTCCATTGCTTTCTTCTGTTCGAGCTAGAGTTATAATATTAGCTTGCGGCCATTTAAATAATTAGAGTGGATAAAATGAGTCACTGAATTAACAACAAATTTGATGTTTCCCGAGAAGACAAGGTACAAGGTGAATTTATGGGAGTGATTTGGAAATTGTTGAAATTTCATTATCAGCAAGTACGTGGGTTCAATTTAATGAAAATTTAAGTTTTCCCAA

Coding sequence (CDS)

ATGAGAGAATCGACGACTCATGAGTTAATCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGATAGAAGAAAATTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTACTTTTCTTTTGCCTTGGTCCTTGGATAACTCTCTACCTGTTCTATTTGGTATTTTATTCTCAGAATTGTATCATTACTTTTAA

Protein sequence

MRESTTHELIQPLTGSSVFSSSFYDRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFASTFLLPWSLDNSLPVLFGILFSELYHYF

Homology

[Close]

BLAST of Clc11G00910.1 vs. NCBI nr
Match: KAG6600796.1 (Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 14  TGSSVFSSSF---YDRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 73
           T SSV SS F    DRRK EMSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGI
Sbjct: 511 TTSSVLSSPFRGCADRRKPEMSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGI 570

[Close]

BLAST of Clc11G00910.1 vs. NCBI nr
Match: KAG6599859.1 (Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]

BLAST of Clc11G00910.1 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]

BLAST of Clc11G00910.1 vs. NCBI nr
Match: XP_022988243.1 (uncharacterized protein LOC111485552 [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]

BLAST of Clc11G00910.1 vs. NCBI nr
Match: TKS07621.1 (hypothetical protein D5086_0000110870 [Populus alba])

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 27  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 67  RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 112

[Close]

BLAST of Clc11G00910.1 vs. ExPASy Swiss-Prot
Match: O22823 (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 71
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGI 40

[Close]

BLAST of Clc11G00910.1 vs. ExPASy Swiss-Prot
Match: Q9M1Z3 (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-10
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 36 EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG 70
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRG 39

[Close]

BLAST of Clc11G00910.1 vs. ExPASy Swiss-Prot
Match: P62312 (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 39 SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+ A
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLA 35

[Close]

BLAST of Clc11G00910.1 vs. ExPASy Swiss-Prot
Match: P62313 (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 39 SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+ A
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLA 35

[Close]

BLAST of Clc11G00910.1 vs. ExPASy Swiss-Prot
Match: Q4PG71 (U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=LSM6 PE=3 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 7.3e-04
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          MS   ++ +A   +P DFLK + G+ V V+LNSG+DYRG+ +
Sbjct: 1  MSAAAQQPNAKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLS 42

[Close]

BLAST of Clc11G00910.1 vs. ExPASy TrEMBL
Match: A0A6J1JLP5 (uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.3e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]

BLAST of Clc11G00910.1 vs. ExPASy TrEMBL
Match: A0A6M2EGR7 (Sm domain-containing protein OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 27 RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 13 RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 58

[Close]

BLAST of Clc11G00910.1 vs. ExPASy TrEMBL
Match: A0A4U5QCB4 (Sm domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000110870 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 27  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 67  RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 112

[Close]

BLAST of Clc11G00910.1 vs. ExPASy TrEMBL
Match: A0A0A0KSS9 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 42

[Close]

BLAST of Clc11G00910.1 vs. ExPASy TrEMBL
Match: A0A6J1DNH0 (sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 42

[Close]

BLAST of Clc11G00910.1 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 71
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGI 40

[Close]

BLAST of Clc11G00910.1 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 71
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGI 40

[Close]

BLAST of Clc11G00910.1 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 36 EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG 70
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRG 39

The following BLAST results are available for this feature:

BLAST of Clc11G00910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600796.1	3.6e-16	83.87	Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbi...	[more]
KAG6599859.1	8.8e-15	93.75	Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023539899.1	8.8e-15	93.75	uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]	[more]
XP_022988243.1	8.8e-15	93.75	uncharacterized protein LOC111485552 [Cucurbita maxima]	[more]
TKS07621.1	8.3e-13	89.13	hypothetical protein D5086_0000110870 [Populus alba]	[more]

BLAST of Clc11G00910.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22823	2.8e-11	85.00	Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1	[more]
Q9M1Z3	5.2e-10	91.18	Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1	[more]
P62312	9.2e-07	73.53	U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV...	[more]
P62313	9.2e-07	73.53	U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 S...	[more]
Q4PG71	7.3e-04	45.24	U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis (strain 521 / FGSC 9...	[more]

BLAST of Clc11G00910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLP5	4.3e-15	93.75	uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552...	[more]
A0A6M2EGR7	4.0e-13	89.13	Sm domain-containing protein OS=Populus davidiana OX=266767 PE=3 SV=1	[more]
A0A4U5QCB4	4.0e-13	89.13	Sm domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000110870 PE=4 S...	[more]
A0A0A0KSS9	5.2e-13	97.62	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=...	[more]
A0A6J1DNH0	5.2e-13	97.62	sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1	[more]

BLAST of Clc11G00910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43810.1	2.0e-12	85.00	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.2	2.0e-12	85.00	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	3.7e-11	91.18	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 35..74 e-value: 1.4E-6 score: 29.8
None	No IPR available	PANTHER	PTHR11021:SF8	SM-LIKE PROTEIN LSM36B-RELATED	coord: 31..72
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 31..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G00910	Clc11G00910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G00910.1-exon	Clc11G00910.1-exon-ClcChr11:1030657..1030685	exon
Clc11G00910.1-exon	Clc11G00910.1-exon-ClcChr11:1030898..1030941	exon
Clc11G00910.1-exon	Clc11G00910.1-exon-ClcChr11:1032919..1034525	exon
Clc11G00910.1-exon	Clc11G00910.1-exon-ClcChr11:1034609..1035262	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G00910.1-cds	Clc11G00910.1-cds-ClcChr11:1030657..1030685	CDS
Clc11G00910.1-cds	Clc11G00910.1-cds-ClcChr11:1030898..1030941	CDS
Clc11G00910.1-cds	Clc11G00910.1-cds-ClcChr11:1032919..1033148	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G00910.1-three_prime_utr	Clc11G00910.1-three_prime_utr-ClcChr11:1033149..1034525	three_prime_UTR
Clc11G00910.1-three_prime_utr	Clc11G00910.1-three_prime_utr-ClcChr11:1034609..1035262	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G00910.1	Clc11G00910.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0030490	maturation of SSU-rRNA
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000932	P-body
cellular_component	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding