Clc10G22240.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc10G22240.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Non-specific lipid-transfer protein
Location	ClcChr10: 35248753 .. 35249190 (+)
Sequence length	357
RNA-Seq Expression	Clc10G22240.1
Synteny	Clc10G22240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGGAGAGGAGCATGAAGGTTTTGATGATTGTGGGAGTTGTGACGACGATGATGGTGGTGGGTGAAGCGGGTGTGACCTGCGGGACAGTGGCTAGCTCGGTGGAGTCTTGCATTCCATATTTGAAAGGCTCATCACCAGGTATCCCAGCAGCATGTTGCGGTGGGATTAAGTCTCTCAACAGCCAAGCCTCCACCCCTGCCGATCGCCGCACCGCTTGCAACTGTTTGAAGTCTGCTGCTAGCAGCATCTCTGGCATCAACTATGGCTTAGCCGCTGGTCTTCCCAGCAAGTGTGGCGTCAGCATTTCTTACGAGATCAGCCCCAGCACCGACTGCTCCAAGTAATGTGTTCTCTTCTACTACTTTTAATTAATTTGTTATCCATCCATCGCTTTTTTACTAATTCTTGTTTTAATTTGCAGGGTGAACTAA

mRNA sequence

ATGGAGATGGAGAGGAGCATGAAGGTTTTGATGATTGTGGGAGTTGTGACGACGATGATGGTGGTGGGTGAAGCGGGTGTGACCTGCGGGACAGTGGCTAGCTCGGTGGAGTCTTGCATTCCATATTTGAAAGGCTCATCACCAGGTATCCCAGCAGCATGTTGCGGTGGGATTAAGTCTCTCAACAGCCAAGCCTCCACCCCTGCCGATCGCCGCACCGCTTGCAACTGTTTGAAGTCTGCTGCTAGCAGCATCTCTGGCATCAACTATGGCTTAGCCGCTGGTCTTCCCAGCAAGTGTGGCGTCAGCATTTCTTACGAGATCAGCCCCAGCACCGACTGCTCCAAGGTGAACTAA

Coding sequence (CDS)

ATGGAGATGGAGAGGAGCATGAAGGTTTTGATGATTGTGGGAGTTGTGACGACGATGATGGTGGTGGGTGAAGCGGGTGTGACCTGCGGGACAGTGGCTAGCTCGGTGGAGTCTTGCATTCCATATTTGAAAGGCTCATCACCAGGTATCCCAGCAGCATGTTGCGGTGGGATTAAGTCTCTCAACAGCCAAGCCTCCACCCCTGCCGATCGCCGCACCGCTTGCAACTGTTTGAAGTCTGCTGCTAGCAGCATCTCTGGCATCAACTATGGCTTAGCCGCTGGTCTTCCCAGCAAGTGTGGCGTCAGCATTTCTTACGAGATCAGCCCCAGCACCGACTGCTCCAAGGTGAACTAA

Protein sequence

MEMERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLNSQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN

Homology

[Close]

BLAST of Clc10G22240.1 vs. NCBI nr
Match: XP_022982607.1 (non-specific lipid-transfer protein 1-like [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 6.1e-39
Identity = 87/116 (75.00%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLN 62
           MERSMK+ ++VGVV   MVVGEA ++CGTVASSV  CIPYL+  S G+PAACC GI+SLN
Sbjct: 1   MERSMKMAIVVGVVLMCMVVGEAAISCGTVASSVAPCIPYLRNPSTGLPAACCSGIRSLN 60

Query: 63  SQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           SQAST ADRRTACNCLKSAA+S+SGINY  A+ LPSKCGVSI Y+ISPSTDC+KVN
Sbjct: 61  SQASTSADRRTACNCLKSAANSVSGINYNAASSLPSKCGVSIPYKISPSTDCNKVN 116

[Close]

BLAST of Clc10G22240.1 vs. NCBI nr
Match: XP_022935125.1 (non-specific lipid-transfer protein 1-like [Cucurbita moschata])

HSP 1 Score: 164.5 bits (415), Expect = 5.7e-37
Identity = 86/116 (74.14%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLN 62
           MERSMK+ +IVGVV   MVVGEA ++CGTVA SV  CI YLK  S G+PAACC GI+SLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAISCGTVARSVSPCISYLKNPSSGVPAACCNGIRSLN 60

Query: 63  SQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           SQAST  DRRTAC CLKSAA+SISGIN+  A+ LPSKCGVSI Y+ISPSTDCSKVN
Sbjct: 61  SQASTSVDRRTACTCLKSAANSISGINFNAASSLPSKCGVSIPYKISPSTDCSKVN 116

[Close]

BLAST of Clc10G22240.1 vs. NCBI nr
Match: XP_023528122.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-36
Identity = 85/116 (73.28%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLN 62
           MERSMK+ +IVGVV   MVVGEA +TCG VASSV  CIPYLK  S G+PAACC GI+SLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVASSVAPCIPYLKNPSSGVPAACCNGIRSLN 60

Query: 63  SQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           SQAST  DRRTAC CLKSAASSI GIN+  A+ LPS+CGV I Y+ISPSTDC+KVN
Sbjct: 61  SQASTSVDRRTACTCLKSAASSIPGINFNAASSLPSQCGVRIPYKISPSTDCNKVN 116

[Close]

BLAST of Clc10G22240.1 vs. NCBI nr
Match: KAG7017187.1 (hypothetical protein SDJN02_19049 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 4.1e-35
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLN 62
           MERSMK+ +IVGVV   MVVGEA +TCG V +S+  CIPYLK  S G+PAACC GI+SLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAITCGAVVNSLAPCIPYLKNPSSGVPAACCNGIRSLN 60

Query: 63  SQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           SQAST  DRR AC CLKSAA+SISGIN+  A+ LPS+CGV I Y+ISPSTDC+KVN
Sbjct: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 116

[Close]

BLAST of Clc10G22240.1 vs. NCBI nr
Match: KAG6580430.1 (hypothetical protein SDJN03_20432, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 9.1e-35
Identity = 81/116 (69.83%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLN 62
           MERSMK+ +IVGVV   MVV EA +TCG V SS+  CIPYLK  S G+PAACC GI+SLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVSEAAITCGAVVSSLAPCIPYLKNPSSGVPAACCNGIRSLN 60

Query: 63  SQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           SQAST  DRR AC CLKSAA+SISGIN+  A+ LPS+CGV I Y+ISPSTDC+KVN
Sbjct: 61  SQASTSVDRRAACTCLKSAANSISGINFNAASNLPSQCGVRIPYKISPSTDCNKVN 116

[Close]

BLAST of Clc10G22240.1 vs. ExPASy Swiss-Prot
Match: P80273 (Non-specific lipid-transfer protein P3 OS=Vitis sp. OX=3604 PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 27  VTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLNSQASTPADRRTACNCLKSAASSIS 86
           ++CG VA+ + SCI YL+G+ P +PAACC G+K+L + A+T  DRRTAC CL SA+ +IS
Sbjct: 1   LSCGDVATQMASCINYLRGAGP-LPAACCNGVKNLKNSATTTQDRRTACKCLISASKTIS 60

Query: 87  GINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           G+N+GLAAGLP+KCGVSI Y+ISPST+C +VN
Sbjct: 61  GVNFGLAAGLPAKCGVSIPYKISPSTNCDQVN 91

[Close]

BLAST of Clc10G22240.1 vs. ExPASy Swiss-Prot
Match: Q43748 (Non-specific lipid-transfer protein OS=Beta vulgaris OX=161934 GN=IWF1' PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-26
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVG--EAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKS 62
           M  S  V     +V  MMV       +TCG VAS +  CI YL+G +PG  AACCGGIKS
Sbjct: 1   MASSAFVKFTCALVMCMMVAAPLAEAITCGLVASKLAPCIGYLQG-APGPSAACCGGIKS 60

Query: 63  LNSQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           LNS A++PADR+TAC CLKSAA+SI GINYG AA LP +CGVS+ Y ISP+T+C+ ++
Sbjct: 61  LNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117

[Close]

BLAST of Clc10G22240.1 vs. ExPASy Swiss-Prot
Match: Q7XJ39 (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-26
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 10  LMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLNSQASTPA 69
           L++ G  TTM     A ++CG V S+V  C+ Y +G S G  AACC G++SLNS AST A
Sbjct: 16  LLLAGPHTTM-----AAISCGQVNSAVSPCLSYARGGS-GPSAACCSGVRSLNSAASTTA 75

Query: 70  DRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           DRRTACNCLK+ A SISG+N G AA +PSKCGVSI Y ISPS DCS VN
Sbjct: 76  DRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118

[Close]

BLAST of Clc10G22240.1 vs. ExPASy Swiss-Prot
Match: A2ZAT0 (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-26
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 10  LMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLNSQASTPA 69
           L++ G  TTM     A ++CG V S+V  C+ Y +G S G  AACC G++SLNS AST A
Sbjct: 16  LLLAGPHTTM-----AAISCGQVNSAVSPCLSYARGGS-GPSAACCSGVRSLNSAASTTA 75

Query: 70  DRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           DRRTACNCLK+ A SISG+N G AA +PSKCGVSI Y ISPS DCS VN
Sbjct: 76  DRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118

[Close]

BLAST of Clc10G22240.1 vs. ExPASy Swiss-Prot
Match: Q43194 (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-26
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVV------GEAGVTCGTVASSVESCIPYLKGSSPGIPAACCG 62
           M RSMK+ + + VV     V       EA VTCG V+S++  C+ Y +G   G  A CC 
Sbjct: 1   MARSMKLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCS 60

Query: 63  GIKSLNSQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSK 119
           G++SLNS A T ADRR ACNCLK+AA  I G+N G AA +PSKCGVSI Y IS STDCS+
Sbjct: 61  GVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSR 120

[Close]

BLAST of Clc10G22240.1 vs. ExPASy TrEMBL
Match: A0A6J1IX25 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111481432 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.9e-39
Identity = 87/116 (75.00%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLN 62
           MERSMK+ ++VGVV   MVVGEA ++CGTVASSV  CIPYL+  S G+PAACC GI+SLN
Sbjct: 1   MERSMKMAIVVGVVLMCMVVGEAAISCGTVASSVAPCIPYLRNPSTGLPAACCSGIRSLN 60

Query: 63  SQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           SQAST ADRRTACNCLKSAA+S+SGINY  A+ LPSKCGVSI Y+ISPSTDC+KVN
Sbjct: 61  SQASTSADRRTACNCLKSAANSVSGINYNAASSLPSKCGVSIPYKISPSTDCNKVN 116

[Close]

BLAST of Clc10G22240.1 vs. ExPASy TrEMBL
Match: A0A6J1F9Q5 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111442087 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.7e-37
Identity = 86/116 (74.14%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVVGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLN 62
           MERSMK+ +IVGVV   MVVGEA ++CGTVA SV  CI YLK  S G+PAACC GI+SLN
Sbjct: 1   MERSMKMAIIVGVVLMCMVVGEAAISCGTVARSVSPCISYLKNPSSGVPAACCNGIRSLN 60

Query: 63  SQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           SQAST  DRRTAC CLKSAA+SISGIN+  A+ LPSKCGVSI Y+ISPSTDCSKVN
Sbjct: 61  SQASTSVDRRTACTCLKSAANSISGINFNAASSLPSKCGVSIPYKISPSTDCSKVN 116

[Close]

BLAST of Clc10G22240.1 vs. ExPASy TrEMBL
Match: A0A5D3DMS3 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00250 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.2e-34
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVV-GEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSL 62
           ME  +K LMIVG+V   MVV GEA VTCG+VA+++  CIPYL+  S  +PA CC GI+SL
Sbjct: 1   MEMKLKGLMIVGIVMMCMVVLGEAAVTCGSVATAMGPCIPYLRSPSASVPAGCCSGIRSL 60

Query: 63  NSQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           N QA+T ADRRTACNCLKSAA SISGINY  AAGLP KCGVSISY ISP+TDCS+VN
Sbjct: 61  NGQAATTADRRTACNCLKSAAKSISGINYKAAAGLPGKCGVSISYPISPNTDCSRVN 117

[Close]

BLAST of Clc10G22240.1 vs. ExPASy TrEMBL
Match: A0A1S3B5F4 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103486230 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.2e-34
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 3   MERSMKVLMIVGVVTTMMVV-GEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSL 62
           ME  +K LMIVG+V   MVV GEA VTCG+VA+++  CIPYL+  S  +PA CC GI+SL
Sbjct: 1   MEMKLKGLMIVGIVMMCMVVLGEAAVTCGSVATAMGPCIPYLRSPSASVPAGCCSGIRSL 60

Query: 63  NSQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           N QA+T ADRRTACNCLKSAA SISGINY  AAGLP KCGVSISY ISP+TDCS+VN
Sbjct: 61  NGQAATTADRRTACNCLKSAAKSISGINYKAAAGLPGKCGVSISYPISPNTDCSRVN 117

[Close]

BLAST of Clc10G22240.1 vs. ExPASy TrEMBL
Match: A0A0A0LF44 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_3G728130 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.6e-31
Identity = 79/121 (65.29%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 3   MERSMKVLMIVGVV----TTMMVVGE-AGVTCGTVASSVESCIPYLKGSSPGIPAACCGG 62
           ME  +K LMIVG+V      M+V GE AG+TCG VASSV  CI YL+ +   +P  CC G
Sbjct: 1   MEMKLKGLMIVGIVGIVMMCMVVQGEAAGMTCGKVASSVSGCIGYLRSAQGQVPQVCCNG 60

Query: 63  IKSLNSQASTPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKV 119
           I+SLNSQAST  DRR ACNCLK+AA SI GINYG AA LPSKCGVS+ Y+ISPSTDC+KV
Sbjct: 61  IRSLNSQASTTVDRRIACNCLKAAAGSIEGINYGAAASLPSKCGVSVPYKISPSTDCAKV 120

[Close]

BLAST of Clc10G22240.1 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-21
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 15  VVTTMMVVG--EAGVTCGTVASSVESCIPYL-KGSSPGIPAACCGGIKSLNSQASTPADR 74
           +V T+ +V   +A ++CGTVA S+  C  YL KG    +P +CC G+K+LNS A T  DR
Sbjct: 11  LVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGL--VPPSCCAGVKTLNSMAKTTPDR 70

Query: 75  RTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKV 118
           + AC C++S A SISG+N  LA+GLP KCGVSI Y IS ST+C+ +
Sbjct: 71  QQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of Clc10G22240.1 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 )

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-19
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 15  VVTTMMVVG-EAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLNSQASTPADRRT 74
           V+T  +V   +A +TCGTVASS+  C+ YL      +P  CC G+K LN  A T  DR+ 
Sbjct: 12  VLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGV-VPPPCCAGVKKLNGMAQTTPDRQQ 71

Query: 75  ACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKV 118
           AC CL+SAA    G+N  LA+GLP KCGVSI Y IS ST+C+ +
Sbjct: 72  ACRCLQSAA---KGVNPSLASGLPGKCGVSIPYPISTSTNCATI 111

[Close]

BLAST of Clc10G22240.1 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 )

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-18
Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 10  LMIVGVVTTMMVVGEAGVTCGTVASSVESCIPY-LKGSSPGIPAACCGGIKSLNSQASTP 69
           L++  ++    +   A ++CG+V S++ +CI Y L+G    IP ACC G+K+LNS A T 
Sbjct: 10  LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGV--IPPACCSGVKNLNSIAKTT 69

Query: 70  ADRRTACNCLKSAASSI-SGINYGLAAGLPSKCGVSISYEISPSTDCSKV 118
            DR+ ACNC++ AA ++ SG+N G AAG+P  CGV+I Y+IS ST+C  V
Sbjct: 70  PDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117

[Close]

BLAST of Clc10G22240.1 vs. TAIR 10
Match: AT3G51590.1 (lipid transfer protein 12 )

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-17
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 8   KVLMIVGVVTTMMV-VGEAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLNSQAS 67
           K++  + V+T  M    E+ + CGTV S++  C+ YL  S P +P+ CC G+KSL   A 
Sbjct: 6   KIITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGP-LPSQCCVGVKSLYQLAQ 65

Query: 68  TPADRRTACNCLKSAASSISGINYGLAAGLPSKCGVSISYEISPSTDCSKVN 119
           T  DR+  C CLK A   I G+N  L A LP+ CGVSI Y IS ST+C  ++
Sbjct: 66  TTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116

[Close]

BLAST of Clc10G22240.1 vs. TAIR 10
Match: AT2G38530.1 (lipid transfer protein 2 )

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 15  VVTTMMVVG----EAGVTCGTVASSVESCIPYLKGSSPGIPAACCGGIKSLNSQASTPAD 74
           V+  M+V G     A ++CGTV  ++  CI YL   +P +   CC G+ +L + AST  D
Sbjct: 11  VLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAP-LTQGCCNGVTNLKNMASTTPD 70

Query: 75  RRTACNCLKSAASSIS-GINYGLAAGLPSKCGVSISYEISPSTDCSKV 118
           R+ AC CL+SAA ++  G+N   AAGLPS C V+I Y+IS ST+C+ V
Sbjct: 71  RQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTV 117

The following BLAST results are available for this feature:

BLAST of Clc10G22240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982607.1	6.1e-39	75.00	non-specific lipid-transfer protein 1-like [Cucurbita maxima]	[more]
XP_022935125.1	5.7e-37	74.14	non-specific lipid-transfer protein 1-like [Cucurbita moschata]	[more]
XP_023528122.1	1.3e-36	73.28	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7017187.1	4.1e-35	69.83	hypothetical protein SDJN02_19049 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6580430.1	9.1e-35	69.83	hypothetical protein SDJN03_20432, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc10G22240.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80273	1.6e-26	61.96	Non-specific lipid-transfer protein P3 OS=Vitis sp. OX=3604 PE=1 SV=2	[more]
Q43748	2.7e-26	56.78	Non-specific lipid-transfer protein OS=Beta vulgaris OX=161934 GN=IWF1' PE=3 SV=...	[more]
Q7XJ39	3.6e-26	60.55	Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2ZAT0	3.6e-26	60.55	Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q43194	3.6e-26	53.28	Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV...	[more]

BLAST of Clc10G22240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IX25	2.9e-39	75.00	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111481432 ...	[more]
A0A6J1F9Q5	2.7e-37	74.14	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11144208...	[more]
A0A5D3DMS3	2.2e-34	70.09	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B5F4	2.2e-34	70.09	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103486230 PE=3...	[more]
A0A0A0LF44	6.6e-31	65.29	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_3G728130 P...	[more]

BLAST of Clc10G22240.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59320.1	2.7e-21	50.94	lipid transfer protein 3	[more]
AT5G59310.1	1.1e-19	50.00	lipid transfer protein 4	[more]
AT2G38540.1	3.7e-18	45.45	lipid transfer protein 1	[more]
AT3G51590.1	3.1e-17	43.75	lipid transfer protein 12	[more]
AT2G38530.1	7.7e-16	44.44	lipid transfer protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 49..63 score: 47.69 coord: 70..85 score: 59.81 coord: 87..104 score: 58.72 coord: 28..44 score: 44.16 coord: 105..116 score: 54.87
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 2..115
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 96..117
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 29..114 e-value: 1.6E-15 score: 67.6
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 29..114 e-value: 1.0E-8 score: 35.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 26..118 e-value: 2.4E-31 score: 109.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 27..117
None	No IPR available	PANTHER	PTHR33076:SF76	NON-SPECIFIC LIPID-TRANSFER PROTEIN 1-RELATED	coord: 2..115
None	No IPR available	CDD	cd01960	nsLTP1	coord: 27..115 e-value: 1.57632E-40 score: 127.851

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc10G22240	Clc10G22240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G22240.1-exon	Clc10G22240.1-exon-ClcChr10:35248753..35249099	exon
Clc10G22240.1-exon	Clc10G22240.1-exon-ClcChr10:35249181..35249190	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G22240.1-cds	Clc10G22240.1-cds-ClcChr10:35248753..35249099	CDS
Clc10G22240.1-cds	Clc10G22240.1-cds-ClcChr10:35249181..35249190	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc10G22240.1	Clc10G22240.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding