Clc10G11530.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc10G11530.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	tRNA-dihydrouridine synthase
Location	ClcChr10: 24924174 .. 24928026 (+)
Sequence length	780
RNA-Seq Expression	Clc10G11530.1
Synteny	Clc10G11530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

atgtttgaggtatctgatttgttggagaggatgtttgcattcagtcagtcaaggaatccaggtttgattcagttccgaatgaggggttccgcttccttcgggagccctaaatgtcctaaggaaaccgcagttagtaatccacagtttgtcgacttaaagagcaggaaagaggttgtcaacattgaaaggtctctactttcttattgtcctatttcttatagtcggtaaaaaaagcagtttgcaaaggaacattttgagttaattcagatgttttgcaagagttttgtacacgtctcctattagctgatacacaaccggcagacaatccacatccttttcctcagagttcaaatttcagtccatcaattgttaaagttccaagatcaaatatttattttgtaaaaggagtttatagtcaatcatctcctaaagacactccttctggttaagattctaatgttgattcagatgttagtttaactgtgaggatattatggattttttagcacaagatgattttgttatggagactccaatagtttgtttgcagatgatgttgataatttgttgagaatggtgaaaatgatcaagcaaaattgtctcccattatcctgcaagttctcgctttgattgaaaattttggtttttagatggaagcgattcctcctcaatctcctttaattaagcatagtttggtggttctgtctaggaattgaactatttgtttggatttctcatgttttagaattttacttttagcttactggaaaaagcttggcttttgatgcatttgggcaacatttatttttggaaggctttttgtttggtttggggatgctcttgcagtgttcgcttggagattttctcttgtcagtttcagctttgtgagcttttacgttattttggttatgtggtgcaagtctttaacgctttttttttttttttttttttataatttcttggaaactggtgctctcctccattttcgacggtgttttggtagtttttgtttggctggcttggtttttggggttggcagtggacaagtcagtctggttttgagctccttttcaagtttcctctgctttcataactttatggcactcaaggctcaagttttgtactttgctagaagattggcagttttggaaattttgtgtttttggttgttatatttaggatcggtctcctttatatctttcattttgttctcgttgctccattttctatgttgtttttgtccttcctttgttacttcattgtaatttgagcattagactcatttaattaattcaatgaaaaagtcttgtttccgttttaaaaaaaaagaaatcatgttcgacagatggaataatcatcacagtaacgttaatagtttggtcaagagttcatgttttttcaacaatatcttggtatgaatatttcatcagagttggttatgcataccttattgatgattgctgttatttatcctccatagcccttggcgtactttaggacatgtagacactgcaatttatggtgcacctagcagtgtatcacacgtcgtcaggtacaatagtaaacttgactgtgaaatgtatcctactttgaaagttgactttctcatttagttgtatacttgtccactctaggtcctcgaacagtatcaagtctatggggattctgttttgggtagatatggaaataaaccaaatatacgagatgttgtgaaggtaagatcttgtgtggcttactgcattttttcgtaattttttaaacacaattttctccccttccaaatgtggggtggggatttgaacatatgtctgtctataagtactcttatgtctgagttgaatttacctttacttattttcagtaatttaaagtatgcgacatgaacactccgtaatcttctcactatctcatgctatatgtgggtttacggaggagtgctggagtaggacttgtaactgttaaggtgttgggttagcatttgtgtattagattagaccgtgtggattttgatggtgaagatttgcaatgtataatgttaaatactcgcactttggatctctagggtgggaataagatggcatggtgattccagttgattgattagactgaggttcctctatcaacgacctaggatgttgataggttgcttcctattgtttttgcattattgtaactttgagctctctttgattactgccaattggaagaatcaattattgcacagcatgctgaattatgcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccctccctggtcatttacaagtatcctttttctgctgcagccgttgcttcacctattttatacggatcctgggaatggtccgtggaagcgtaaagctgatgctgcttttcagcactgcaaggtattaaaatatgctggaagagagtaggttcatcctagtgaattttgatgtgaatgcatgacatatttttgctctgcttccttttaacagtttcatggtagacttttcactttgattttagttttacccaaatttttttaagtcggtttttacatttcacgtttctatcaccaactgagatttttcactagcattattacagaggttttctgtcctttaaattccccaccattaaatgcttggctgcattgcttctaaccgaactgctattgaaccttgtagaccatcaagtcatttttcgatgaaacacttgtggccattccagattatgtattggatgctcctgtagcagaacctccatctggacgtgaagatctttttgccaatacgcttagtttgatgcctcatccatatggaaatagagaccaaaaggtagtattagaggcttaattttgtatcattgtttaaaccttgtataactgaaacaatctttatacacttttcacttattctttgcataattcattgatgggtaatcaaagatgttgcccttgtaaactggtcattcatcttatttatcagtagaaagggatattagaggcttttgctcttttcttgtcttgagactacttgttgcctttttttccttctcttccaacgatgaagaggtctcaaagtcattgattcctatcagagatatctaatgcatcgcgaacatagcgcaacgttttgttggtccaaaaatagggataagataatggacgaagtcttttagggttgtttgaccctccaactttaattaggtgagcggagtgggctattatagtctattcactgtttgggcttctaattataatagttggtgtttctaactattataacccacaattaattatagtaaactatttcaaatctcttttttttgcgtgtttattatttacccattttctctcatcattagtttaaactaaaatagtttgcatttcaaatacaaattattataactcaccaactataaaaaccactaactataataatcaactcagcacctcaaatgtctccttacatattgtgcacatacgtacatcattttaaaactacctaggaaggaaactgaggagctttagttaccacagcccatgaccgctacaatgcttggtattttgggacacccctcaagtacccaccgaaggctagatgtaaatgctaccggagcttctcagtggggaatggcaaaggtcaatggcgtataattgagaaagagagcagccatgtaaggagggatttgacttttgctgctgctgctggctccattgcttggagtcgcagtgacggagccaaaaccgaaatctcccaaggcaaagaagatctatgcccctgtttatga

mRNA sequence

atgtttgaggtatctgatttgttggagaggatgtttgcattcagtcagtcaaggaatccaggtttgattcagttccgaatgaggggttccgcttccttcgggagccctaaatgtcctaaggaaaccgcagttagtaatccacagtttgtcgacttaaagagcaggaaagaggttgtcaacattgaaagtgttcgcttggagattttctcttgtcagtttcagctttgtgagcttttacgttattttggttatgtggtgcaagtcctcgaacagtatcaagtctatggggattctgttttgggtagatatggaaataaaccaaatatacgagatgttgtgaagccgttgcttcacctattttatacggatcctgggaatggtccgtggaagcgtaaagctgatgctgcttttcagcactgcaagaccatcaagtcatttttcgatgaaacacttgtggccattccagattatgtattggatgctcctgtagcagaacctccatctggacgtgaagatctttttgccaatacgcttagtttgatgcctcatccatatggaaatagagaccaaaagtacccaccgaaggctagatgtaaatgctaccggagcttctcagtggggaatggcaaaggtcaatggcgtataattgagaaagagagcagccatgtaaggagggatttgacttttgctgctgctgctggctccattgcttggagtcgcagtgacggagccaaaaccgaaatctcccaaggcaaagaagatctatgcccctgtttatga

Coding sequence (CDS)

atgtttgaggtatctgatttgttggagaggatgtttgcattcagtcagtcaaggaatccaggtttgattcagttccgaatgaggggttccgcttccttcgggagccctaaatgtcctaaggaaaccgcagttagtaatccacagtttgtcgacttaaagagcaggaaagaggttgtcaacattgaaagtgttcgcttggagattttctcttgtcagtttcagctttgtgagcttttacgttattttggttatgtggtgcaagtcctcgaacagtatcaagtctatggggattctgttttgggtagatatggaaataaaccaaatatacgagatgttgtgaagccgttgcttcacctattttatacggatcctgggaatggtccgtggaagcgtaaagctgatgctgcttttcagcactgcaagaccatcaagtcatttttcgatgaaacacttgtggccattccagattatgtattggatgctcctgtagcagaacctccatctggacgtgaagatctttttgccaatacgcttagtttgatgcctcatccatatggaaatagagaccaaaagtacccaccgaaggctagatgtaaatgctaccggagcttctcagtggggaatggcaaaggtcaatggcgtataattgagaaagagagcagccatgtaaggagggatttgacttttgctgctgctgctggctccattgcttggagtcgcagtgacggagccaaaaccgaaatctcccaaggcaaagaagatctatgcccctgtttatga

Protein sequence

MFEVSDLLERMFAFSQSRNPGLIQFRMRGSASFGSPKCPKETAVSNPQFVDLKSRKEVVNIESVRLEIFSCQFQLCELLRYFGYVVQVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSFFDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQKYPPKARCKCYRSFSVGNGKGQWRIIEKESSHVRRDLTFAAAAGSIAWSRSDGAKTEISQGKEDLCPCL

Homology

[Close]

BLAST of Clc10G11530.1 vs. NCBI nr
Match: KAA0048360.1 (tRNA-dihydrouridine(20/20a) synthase-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 9.5e-53
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF
Sbjct: 381 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 440

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQKYPPKARCKCYRS 204
           F+ETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK   +A   CY +
Sbjct: 441 FEETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK---EAEELCYHA 494

[Close]

BLAST of Clc10G11530.1 vs. NCBI nr
Match: XP_008461804.1 (PREDICTED: tRNA-dihydrouridine(20/20a) synthase-like isoform X2 [Cucumis melo] >XP_008461805.1 PREDICTED: tRNA-dihydrouridine(20/20a) synthase-like isoform X2 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-52
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF
Sbjct: 266 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 325

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           F+ETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 326 FEETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 370

[Close]

BLAST of Clc10G11530.1 vs. NCBI nr
Match: XP_008461802.1 (PREDICTED: tRNA-dihydrouridine(20/20a) synthase-like isoform X1 [Cucumis melo] >XP_008461803.1 PREDICTED: tRNA-dihydrouridine(20/20a) synthase-like isoform X1 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-52
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF
Sbjct: 322 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 381

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           F+ETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 382 FEETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 426

[Close]

BLAST of Clc10G11530.1 vs. NCBI nr
Match: XP_004149715.1 (uncharacterized protein LOC101215708 isoform X1 [Cucumis sativus] >KGN58585.1 hypothetical protein Csa_000907 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-51
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAF HCKTIKSF
Sbjct: 322 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFMHCKTIKSF 381

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           F+ET+VAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 382 FEETIVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 426

[Close]

BLAST of Clc10G11530.1 vs. NCBI nr
Match: XP_011651772.1 (uncharacterized protein LOC101215708 isoform X2 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-51
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAF HCKTIKSF
Sbjct: 266 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFMHCKTIKSF 325

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           F+ET+VAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 326 FEETIVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 370

[Close]

BLAST of Clc10G11530.1 vs. ExPASy TrEMBL
Match: A0A5A7TYY6 (tRNA-dihydrouridine(20/20a) synthase-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00790 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 4.6e-53
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF
Sbjct: 381 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 440

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQKYPPKARCKCYRS 204
           F+ETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK   +A   CY +
Sbjct: 441 FEETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK---EAEELCYHA 494

[Close]

BLAST of Clc10G11530.1 vs. ExPASy TrEMBL
Match: A0A1S3CGV7 (tRNA-dihydrouridine(20/20a) synthase-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500317 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 7.8e-53
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF
Sbjct: 322 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 381

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           F+ETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 382 FEETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 426

[Close]

BLAST of Clc10G11530.1 vs. ExPASy TrEMBL
Match: A0A1S3CFF9 (tRNA-dihydrouridine synthase OS=Cucumis melo OX=3656 GN=LOC103500317 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 7.8e-53
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF
Sbjct: 266 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 325

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           F+ETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 326 FEETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 370

[Close]

BLAST of Clc10G11530.1 vs. ExPASy TrEMBL
Match: A0A0A0L9H3 (Dus domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690820 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 5.1e-52
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAF HCKTIKSF
Sbjct: 322 QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFMHCKTIKSF 381

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           F+ET+VAIPDYVLDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 382 FEETIVAIPDYVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 426

[Close]

BLAST of Clc10G11530.1 vs. ExPASy TrEMBL
Match: A0A6J1GCK7 (tRNA-dihydrouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111452746 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGNKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 146
           QVLEQYQVYGDSVLG YGN+P+IR+VVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF
Sbjct: 266 QVLEQYQVYGDSVLGTYGNRPSIREVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKSF 325

Query: 147 FDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPYGNRDQK 192
           FDETLVAIPDY+LDAPVAEPPSGREDLFANTLSLMP PY +R+QK
Sbjct: 326 FDETLVAIPDYILDAPVAEPPSGREDLFANTLSLMPPPYEDREQK 370

[Close]

BLAST of Clc10G11530.1 vs. TAIR 10
Match: AT5G47970.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-32
Identity = 58/100 (58.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYG-NKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKS 146
           QVLE+Y++YG+SVLG+YG  +PN+RD+V+PL++LF+++ GNG WKR+ DAA  HC T++S
Sbjct: 267 QVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFHSESGNGQWKRRTDAALLHCTTLQS 326

Query: 147 FFDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPY 186
           F DE L AIPDYVLD+   +  +GREDLFA+   L+P PY
Sbjct: 327 FLDEVLPAIPDYVLDSSAVKEATGREDLFADVQRLLPPPY 366

[Close]

BLAST of Clc10G11530.1 vs. TAIR 10
Match: AT5G47970.2 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-32
Identity = 58/100 (58.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYG-NKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKS 146
           QVLE+Y++YG+SVLG+YG  +PN+RD+V+PL++LF+++ GNG WKR+ DAA  HC T++S
Sbjct: 267 QVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFHSESGNGQWKRRTDAALLHCTTLQS 326

Query: 147 FFDETLVAIPDYVLDAPVAEPPSGREDLFANTLSLMPHPY 186
           F DE L AIPDYVLD+   +  +GREDLFA+   L+P PY
Sbjct: 327 FLDEVLPAIPDYVLDSSAVKEATGREDLFADVQRLLPPPY 366

[Close]

BLAST of Clc10G11530.1 vs. TAIR 10
Match: AT3G63510.1 (FMN-linked oxidoreductases superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-31
Identity = 60/101 (59.41%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGN-KPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKS 146
           QVLEQYQVYGDSVLG +GN +PN+RD+VKPLL+LF+++ GN  WKR+ADAAF+ C+++ S
Sbjct: 309 QVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGS 368

Query: 147 FFDETLVAIPDYVLDAPVA-EPPSGREDLFANTLSLMPHPY 186
             +E+L AIPD VLD+P++  P SG ED+FA+  +++P PY
Sbjct: 369 LLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPY 409

[Close]

BLAST of Clc10G11530.1 vs. TAIR 10
Match: AT3G63510.2 (FMN-linked oxidoreductases superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-31
Identity = 60/101 (59.41%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 87  QVLEQYQVYGDSVLGRYGN-KPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFQHCKTIKS 146
           QVLEQYQVYGDSVLG +GN +PN+RD+VKPLL+LF+++ GN  WKR+ADAAF+ C+++ S
Sbjct: 276 QVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGS 335

Query: 147 FFDETLVAIPDYVLDAPVA-EPPSGREDLFANTLSLMPHPY 186
             +E+L AIPD VLD+P++  P SG ED+FA+  +++P PY
Sbjct: 336 LLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPY 376

The following BLAST results are available for this feature:

BLAST of Clc10G11530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048360.1	9.5e-53	88.03	tRNA-dihydrouridine(20/20a) synthase-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008461804.1	1.6e-52	95.24	PREDICTED: tRNA-dihydrouridine(20/20a) synthase-like isoform X2 [Cucumis melo] >...	[more]
XP_008461802.1	1.6e-52	95.24	PREDICTED: tRNA-dihydrouridine(20/20a) synthase-like isoform X1 [Cucumis melo] >...	[more]
XP_004149715.1	1.1e-51	93.33	uncharacterized protein LOC101215708 isoform X1 [Cucumis sativus] >KGN58585.1 hy...	[more]
XP_011651772.1	1.1e-51	93.33	uncharacterized protein LOC101215708 isoform X2 [Cucumis sativus]	[more]

BLAST of Clc10G11530.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G11530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYY6	4.6e-53	88.03	tRNA-dihydrouridine(20/20a) synthase-like isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A1S3CGV7	7.8e-53	95.24	tRNA-dihydrouridine(20/20a) synthase-like isoform X1 OS=Cucumis melo OX=3656 GN=...	[more]
A0A1S3CFF9	7.8e-53	95.24	tRNA-dihydrouridine synthase OS=Cucumis melo OX=3656 GN=LOC103500317 PE=3 SV=1	[more]
A0A0A0L9H3	5.1e-52	93.33	Dus domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690820 PE=4 SV...	[more]
A0A6J1GCK7	4.3e-51	91.43	tRNA-dihydrouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111452746 PE=3 ...	[more]

BLAST of Clc10G11530.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47970.1	3.4e-32	58.00	Aldolase-type TIM barrel family protein	[more]
AT5G47970.2	3.4e-32	58.00	Aldolase-type TIM barrel family protein	[more]
AT3G63510.1	6.4e-31	59.41	FMN-linked oxidoreductases superfamily protein	[more]
AT3G63510.2	6.4e-31	59.41	FMN-linked oxidoreductases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004653	tRNA-dihydrouridine(20/20a) synthase	PANTHER	PTHR42907	FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN	coord: 87..190
None	No IPR available	PANTHER	PTHR42907:SF2	TRNA-DIHYDROURIDINE SYNTHASE	coord: 87..190

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc10G11530	Clc10G11530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G11530.1-exon	Clc10G11530.1-exon-ClcChr10:24924174..24924361	exon
Clc10G11530.1-exon	Clc10G11530.1-exon-ClcChr10:24925020..24925092	exon
Clc10G11530.1-exon	Clc10G11530.1-exon-ClcChr10:24925808..24925888	exon
Clc10G11530.1-exon	Clc10G11530.1-exon-ClcChr10:24926559..24926639	exon
Clc10G11530.1-exon	Clc10G11530.1-exon-ClcChr10:24926922..24927071	exon
Clc10G11530.1-exon	Clc10G11530.1-exon-ClcChr10:24927820..24928026	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G11530.1-cds	Clc10G11530.1-cds-ClcChr10:24924174..24924361	CDS
Clc10G11530.1-cds	Clc10G11530.1-cds-ClcChr10:24925020..24925092	CDS
Clc10G11530.1-cds	Clc10G11530.1-cds-ClcChr10:24925808..24925888	CDS
Clc10G11530.1-cds	Clc10G11530.1-cds-ClcChr10:24926559..24926639	CDS
Clc10G11530.1-cds	Clc10G11530.1-cds-ClcChr10:24926922..24927071	CDS
Clc10G11530.1-cds	Clc10G11530.1-cds-ClcChr10:24927820..24928026	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc10G11530.1	Clc10G11530.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002943	tRNA dihydrouridine synthesis
molecular_function	GO:0017150	tRNA dihydrouridine synthase activity
molecular_function	GO:0050660	flavin adenine dinucleotide binding