Clc10G06230.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc10G06230.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	ClcChr10: 8211399 .. 8214188 (+)
Sequence length	1892
RNA-Seq Expression	Clc10G06230.1
Synteny	Clc10G06230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATATGAGTTGGAGATGCATAAAAATCTTTAGAAGGAATATGATTGGCTAACTAAAGCCTCTTATTACCCCACAAAATTTCTCAATCTTCCATTATTCACCACTCATCTTCCTCGTTTCCCCATAATATTCCCCCACTTTCCCTTCTCTATCACACAATTGCAACAGCAGTGGCCCTTCCTCAGTCCTTTCTCACAAACTCAAACACAGAGCTTCAACTAGCAATGGCCGCCACAGCCACCGCCACCTCCGCCACCCTCCTCCGGGCTACTCCCTTTCTTGGCCAGACCAGAGGCTCTTCCCAGAACTCCCTCAGAGATGTCGTCGCCATGGGAACTGGCAAATACACCATGGTCTCACTCACTCTGTTTCTTCTGTCTATATATATGTCTCTGTTTTTGGGGTGTTCTTGAAGATTGATGGTGTTTTTTTTTTTCTTTTTCTTTTTCTTTCAAATTTGAATAGGGAAATGATCTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCGTTTTCAGCTCAGACTCCATCCTACTTGAACGGTGAATTCCCCGGCGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCTTTCGCCAAGAACAGAGCCCTCGAGGTAGTTCAATTTAGTTAATGTATTCTCAAATTTGGTATTTGGTTAAGTTTGATCTTTGTATGTCGAATTTGGTATTCTATTTTTAAAAAATGATTATGTTGGTTTCTATTTGTAAAATTTTAACATAAAGTTTAGAAAAAAGAGTTACTTTGGATCAAATTGAATCAGAGGAAGATAAAGTAGTATTTAATTTTATTGATGGATCCAAAAGTTTCAACTTTCAGTTAATTATTAATTTAATACAGTTTCGGAGTAATAGGTCATTTGTTCAAATTAATATTATGTTACTTTTTCTCTGATTAATATTGATTTACTTTCTTGCGTATTTTATAAATTTTTAAGTCTACAATTGTTAGGGTAGGTTAAAAGTCTAATTCATATAATTAAATTTAGATTAAATTACTATTTTGGTTTTGAGATTTGTTCAATTTTAATCATTAAATACATGTATTTTTAGTAAATCTTAAATTTAGTCACTCAATTTTTTTTTTAATGAAATTGGCTAAATTTTAATAAGAATTTTTATATAAAAAAAATATAATAGATGAATATGTTTTCAAAATTTAGTAAAAATATTAATAGATAAAAAAGTTAAAAAAATCAACCATAATTAAGATATAGACTAAATTTAAAATTTATTAAAAATATAAAAATTAAAATTGTCAAAAAAAAAAAATTAAAAAAAATGGAAACTCTAAATTTCTCATAGTGAAATCTATCCCTTAAACTTGTAGGTTGATTCAACACCGCCAATTAAATTTTGAAAATTAAATGATGAATTTGCAGGTGATCCACGGGAGGTGGGCGATGTTGGGAGCATTGGGTTGCATAACACCCGAAGTGCTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTGTGGTTCAAGGCAGGGGCCCAAATCTTCACAGAAGGTGGTCTAGACTACCTAGGCAACCCCAACCTGGTCCACGCCCAGAGCATCCTAGCCGTCTTGGGGTTCCAAGTGGTCCTAATGGGTCTTGTCGAAGGCTTCCGCATCAACGGCCTCGACGGTGTCGGCGAGGGCAACGACCTCTACCCGGGCGGTCAGTACTTTGACCCTCTCGGACTGGCCGATGACCCAGTCACCTTCGCGGAGCTGAAGGTCAAGGAGATCAAGAATGGCCGTCTTGCCATGTTTTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTCACTGGAAAGGGCCCTCTTGAGAACCTTCTTGACCATCTTGATAACCCTGTGGCTAACAATGCTTGGGTTTATGCTACCAAGTTTGCCCCTGGCTCATAAGTATCACATTAATCATGGAAATTCAACAAGTGATCTGTTGTGTAAATTGTTTGTAGCTTTCTGTTTTTTTGGGTGTGGGTTGGTGTGATTATAATTAGATGGTTGAGTATTGAGGTGGATCAATGGACATTAATTCCCACTTGATCTAATGGATAATGTTCTTAATCTTAATTACATCATTTGATTTACTTTAGGCTCAAATTCAAATTAGTTTAAAATTATACCACATCTGATTTTTTAAATAAATTTAGAATTCTTTAATAAGTAATTCTACGAAATAAAATAAAAATTAGAGGTAGCTCATTCTTAAATATTAAGAAAGAAAAAAACTTAATAAGTTGCCGTATGGTAAACTTTTTGTTTCTTTTTTAGATAGGTACAATATTAGTTGCCTTATTACTATTAACTAAATAGAAAAAATGTTTAGAGTAATTATTATTTATCATTAAGAAACTAAGATTCTTTTTGATAAAAAACAAAAATGATTTATTCCAAATAGAAAATGGAAATGATTTAATGTGGGAAGAAATGATGGTAAATAACATACATATGTTGGTTTTGCCATTCCAAAGGTAAAGAATATGCATAAAATGAATTAGAATATTCTGTGTCATGCCTTTAGGACCAATTACTCTTTCAAGGACCATAAAGTTACAACTGGCTAGTCTAAGATTAATACATATACAAGCAGTGGTGTGCTATGTTAGAAAAAAACAAGAAGAGAGAAAGAGGGAAAAAACCTTCACATAGTGCCAAATATTGTAATATGGGGAAATTTGTGCAAATATGTATAACTCAACTAATATAGTGCTTATATTATCTAATCTTGAAGTTAGAGGTTTGATTCTCTTACCCCACATATTAT

mRNA sequence

AAAGATATGAGTTGGAGATGCATAAAAATCTTTAGAAGGAATATGATTGGCTAACTAAAGCCTCTTATTACCCCACAAAATTTCTCAATCTTCCATTATTCACCACTCATCTTCCTCGTTTCCCCATAATATTCCCCCACTTTCCCTTCTCTATCACACAATTGCAACAGCAGTGGCCCTTCCTCAGTCCTTTCTCACAAACTCAAACACAGAGCTTCAACTAGCAATGGCCGCCACAGCCACCGCCACCTCCGCCACCCTCCTCCGGGCTACTCCCTTTCTTGGCCAGACCAGAGGCTCTTCCCAGAACTCCCTCAGAGATGTCGTCGCCATGGGAACTGGCAAATACACCATGGGAAATGATCTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCGTTTTCAGCTCAGACTCCATCCTACTTGAACGGTGAATTCCCCGGCGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCTTTCGCCAAGAACAGAGCCCTCGAGGTGATCCACGGGAGGTGGGCGATGTTGGGAGCATTGGGTTGCATAACACCCGAAGTGCTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTGTGGTTCAAGGCAGGGGCCCAAATCTTCACAGAAGGTGGTCTAGACTACCTAGGCAACCCCAACCTGGTCCACGCCCAGAGCATCCTAGCCGTCTTGGGGTTCCAAGTGGTCCTAATGGGTCTTGTCGAAGGCTTCCGCATCAACGGCCTCGACGGTGTCGGCGAGGGCAACGACCTCTACCCGGGCGGTCAGTACTTTGACCCTCTCGGACTGGCCGATGACCCAGTCACCTTCGCGGAGCTGAAGGTCAAGGAGATCAAGAATGGCCGTCTTGCCATGTTTTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTCACTGGAAAGGGCCCTCTTGAGAACCTTCTTGACCATCTTGATAACCCTGTGGCTAACAATGCTTGGGTTTATGCTACCAAGTTTGCCCCTGGCTCATAAGTATCACATTAATCATGGAAATTCAACAAGTGATCTGTTGTGTAAATTGTTTGTAGCTTTCTGTTTTTTTGGGTGTGGGTTGGTGTGATTATAATTAGATGGTTGAGTATTGAGGTGGATCAATGGACATTAATTCCCACTTGATCTAATGGATAATGTTCTTAATCTTAATTACATCATTTGATTTACTTTAGGCTCAAATTCAAATTAGTTTAAAATTATACCACATCTGATTTTTTAAATAAATTTAGAATTCTTTAATAAGTAATTCTACGAAATAAAATAAAAATTAGAGGTAGCTCATTCTTAAATATTAAGAAAGAAAAAAACTTAATAAGTTGCCGTATGGTAAACTTTTTGTTTCTTTTTTAGATAGGTACAATATTAGTTGCCTTATTACTATTAACTAAATAGAAAAAATGTTTAGAGTAATTATTATTTATCATTAAGAAACTAAGATTCTTTTTGATAAAAAACAAAAATGATTTATTCCAAATAGAAAATGGAAATGATTTAATGTGGGAAGAAATGATGGTAAATAACATACATATGTTGGTTTTGCCATTCCAAAGGTAAAGAATATGCATAAAATGAATTAGAATATTCTGTGTCATGCCTTTAGGACCAATTACTCTTTCAAGGACCATAAAGTTACAACTGGCTAGTCTAAGATTAATACATATACAAGCAGTGGTGTGCTATGTTAGAAAAAAACAAGAAGAGAGAAAGAGGGAAAAAACCTTCACATAGTGCCAAATATTGTAATATGGGGAAATTTGTGCAAATATGTATAACTCAACTAATATAGTGCTTATATTATCTAATCTTGAAGTTAGAGGTTTGATTCTCTTACCCCACATATTAT

Coding sequence (CDS)

ATGGCCGCCACAGCCACCGCCACCTCCGCCACCCTCCTCCGGGCTACTCCCTTTCTTGGCCAGACCAGAGGCTCTTCCCAGAACTCCCTCAGAGATGTCGTCGCCATGGGAACTGGCAAATACACCATGGGAAATGATCTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCGTTTTCAGCTCAGACTCCATCCTACTTGAACGGTGAATTCCCCGGCGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCTTTCGCCAAGAACAGAGCCCTCGAGGTGATCCACGGGAGGTGGGCGATGTTGGGAGCATTGGGTTGCATAACACCCGAAGTGCTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTGTGGTTCAAGGCAGGGGCCCAAATCTTCACAGAAGGTGGTCTAGACTACCTAGGCAACCCCAACCTGGTCCACGCCCAGAGCATCCTAGCCGTCTTGGGGTTCCAAGTGGTCCTAATGGGTCTTGTCGAAGGCTTCCGCATCAACGGCCTCGACGGTGTCGGCGAGGGCAACGACCTCTACCCGGGCGGTCAGTACTTTGACCCTCTCGGACTGGCCGATGACCCAGTCACCTTCGCGGAGCTGAAGGTCAAGGAGATCAAGAATGGCCGTCTTGCCATGTTTTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTCACTGGAAAGGGCCCTCTTGAGAACCTTCTTGACCATCTTGATAACCCTGTGGCTAACAATGCTTGGGTTTATGCTACCAAGTTTGCCCCTGGCTCATAA

Protein sequence

MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS

Homology

[Close]

BLAST of Clc10G06230.1 vs. NCBI nr
Match: XP_008452292.1 (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo] >KAA0046876.1 chlorophyll a-b binding protein 13 [Cucumis melo var. makuwa] >TYK03270.1 chlorophyll a-b binding protein 13 [Cucumis melo var. makuwa])

HSP 1 Score: 539.7 bits (1389), Expect = 1.5e-149
Identity = 258/262 (98.47%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           +TATSATLLRATPFLGQTRGS QN LRD VAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT
Sbjct: 3   STATSATLLRATPFLGQTRGSPQNPLRDFVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 62

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD
Sbjct: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 122

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE
Sbjct: 123 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 243 DHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. NCBI nr
Match: XP_023553506.1 (chlorophyll a-b binding protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 533.9 bits (1374), Expect = 8.0e-148
Identity = 257/266 (96.62%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPF 60
           MAATATA S  LLRATPFLGQTR S QN LRDVVAMGT KYTMGNDLWYGPDRVKYLGPF
Sbjct: 1   MAATATAASTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPF 60

Query: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 120
           SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW
Sbjct: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 120

Query: 121 LKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180
           LKVDFKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD
Sbjct: 121 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180

Query: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
           GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLLDHLDNPVANNAWVYATKFAPGS 267
           ENLLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 ENLLDHLDNPVANNAWVYATKFAPGS 266

[Close]

BLAST of Clc10G06230.1 vs. NCBI nr
Match: XP_022985252.1 (chlorophyll a-b binding protein 13, chloroplastic [Cucurbita maxima])

HSP 1 Score: 530.8 bits (1366), Expect = 6.8e-147
Identity = 257/266 (96.62%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPF 60
           MAATATAT   LLRATPFLGQTR S QN LRDVVAMGT KYTMGNDLWYGPDRVKYLGPF
Sbjct: 1   MAATATATG--LLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPF 60

Query: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 120
           SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW
Sbjct: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 120

Query: 121 LKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180
           LKVDFKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD
Sbjct: 121 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180

Query: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
           GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLLDHLDNPVANNAWVYATKFAPGS 267
           ENLLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 ENLLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 530.0 bits (1364), Expect = 1.2e-146
Identity = 254/262 (96.95%), Postives = 255/262 (97.33%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           ATATS  LLRATPFLGQTR S QN LRDVVAMGT KYTMGNDLWYGPDRVKYLGPFSAQT
Sbjct: 3   ATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSAQT 62

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWLKVD
Sbjct: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVD 122

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE
Sbjct: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 243 DHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. NCBI nr
Match: XP_022929511.1 (chlorophyll a-b binding protein 13, chloroplastic [Cucurbita moschata])

HSP 1 Score: 530.0 bits (1364), Expect = 1.2e-146
Identity = 254/262 (96.95%), Postives = 255/262 (97.33%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           ATATS  LLRATPFLGQTR S QN LRDVVAMGT KYTMGNDLWYGPDRVKYLGPFSAQT
Sbjct: 3   ATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSAQT 62

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWLKVD
Sbjct: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVD 122

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE
Sbjct: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 243 DHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. ExPASy Swiss-Prot
Match: P27489 (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB13 PE=1 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.4e-141
Identity = 237/262 (90.46%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           ATA+S T+++ATPFLGQT+ +  N LRDVVAMG+ ++TM NDLWYGPDRVKYLGPFSAQT
Sbjct: 6   ATASSTTVVKATPFLGQTKNA--NPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQT 65

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI PEVLEKW+KVD
Sbjct: 66  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVD 125

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAG+QIF++GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GVGE
Sbjct: 126 FKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 185

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 186 GNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 245

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLDNPVANNAWVYATKF PG+
Sbjct: 246 DHLDNPVANNAWVYATKFVPGA 265

[Close]

BLAST of Clc10G06230.1 vs. ExPASy Swiss-Prot
Match: Q9S7M0 (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 3.8e-140
Identity = 236/266 (88.72%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPF 60
           MA+T T +S+++L  T FLGQT+ SS N LRDVV++G+ KYTMGNDLWYGPDRVKYLGPF
Sbjct: 1   MASTFT-SSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPF 60

Query: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 120
           S QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KW
Sbjct: 61  SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 120

Query: 121 LKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180
           ++VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLD
Sbjct: 121 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 180

Query: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
           GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLLDHLDNPVANNAWVYATKFAPGS 267
           ENLLDHLDNPVANNAW +ATKFAPG+
Sbjct: 241 ENLLDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of Clc10G06230.1 vs. ExPASy Swiss-Prot
Match: P27523 (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHBC PE=2 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 1.4e-134
Identity = 230/268 (85.82%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MAAT-ATATSATLLRATPFL-GQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLG 60
           MA+T   A S  ++  TPFL GQ R +S + LRD+ A   G+ TMGNDLWYGPDRVKYLG
Sbjct: 1   MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLG 60

Query: 61  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 120
           PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+ PEVL+
Sbjct: 61  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQ 120

Query: 121 KWLKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
           KW+ V+FKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRING
Sbjct: 121 KWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRING 180

Query: 181 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
           LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLLDHLDNPVANNAWVYATKFAPGS 267
           PLENL DHLD+PVANNAWV+ATKFAPGS
Sbjct: 241 PLENLFDHLDDPVANNAWVFATKFAPGS 268

[Close]

BLAST of Clc10G06230.1 vs. ExPASy Swiss-Prot
Match: P14278 (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB4 PE=2 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.9e-101
Identity = 185/262 (70.61%), Postives = 206/262 (78.63%), Query Frame = 0


Query: 13  LRATPFLGQTRGSSQNS-LRDVVAMGTGKYTM-------GNDLWYGPDRVKYLGPFSAQT 72
           ++ + F+GQ  G SQN  +R V   G G+ TM          +WYG DR KYLGPFS QT
Sbjct: 6   IQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQT 65

Query: 73  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 132
           PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   V 
Sbjct: 66  PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVK 125

Query: 133 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 192
           F E VWFKAG+QIF+EGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G   +GE
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-GPLGE 185

Query: 193 GND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 252
           G D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 186 GLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 245

Query: 253 LDHLDNPVANNAWVYATKFAPG 266
            DH+++PVANNAW YAT F PG
Sbjct: 246 SDHINDPVANNAWAYATNFVPG 264

[Close]

BLAST of Clc10G06230.1 vs. ExPASy Swiss-Prot
Match: P12328 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba OX=4470 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.8e-100
Identity = 183/265 (69.06%), Postives = 208/265 (78.49%), Query Frame = 0


Query: 9   SATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTM-------GNDLWYGPDRVKYLGPFS 68
           +A+ ++++ F GQT    ++ L   V +  G+++M          +WYG DR K+LGPFS
Sbjct: 2   AASAIQSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFS 61

Query: 69  AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 128
            QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGCI PE+L K  
Sbjct: 62  EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK-N 121

Query: 129 KVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDG 188
            V F E VWFKAGAQIF+EGGLDYLGNPNLVHAQSILA+   QVVLMGL+EG+R+ G   
Sbjct: 122 GVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGG-GP 181

Query: 189 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 248
           +GEG D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 241

Query: 249 ENLLDHLDNPVANNAWVYATKFAPG 266
           ENL DH+ +PVANNAW +AT F PG
Sbjct: 242 ENLADHIADPVANNAWAFATNFVPG 263

[Close]

BLAST of Clc10G06230.1 vs. ExPASy TrEMBL
Match: A0A5A7TY25 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00970 PE=3 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 7.1e-150
Identity = 258/262 (98.47%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           +TATSATLLRATPFLGQTRGS QN LRD VAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT
Sbjct: 3   STATSATLLRATPFLGQTRGSPQNPLRDFVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 62

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD
Sbjct: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 122

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE
Sbjct: 123 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 243 DHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. ExPASy TrEMBL
Match: A0A1S3BUM8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493363 PE=3 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 7.1e-150
Identity = 258/262 (98.47%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           +TATSATLLRATPFLGQTRGS QN LRD VAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT
Sbjct: 3   STATSATLLRATPFLGQTRGSPQNPLRDFVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 62

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD
Sbjct: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 122

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE
Sbjct: 123 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 243 DHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. ExPASy TrEMBL
Match: A0A6J1J4D4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483299 PE=3 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 3.3e-147
Identity = 257/266 (96.62%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPF 60
           MAATATAT   LLRATPFLGQTR S QN LRDVVAMGT KYTMGNDLWYGPDRVKYLGPF
Sbjct: 1   MAATATATG--LLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPF 60

Query: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 120
           SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW
Sbjct: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 120

Query: 121 LKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180
           LKVDFKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD
Sbjct: 121 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180

Query: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
           GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLLDHLDNPVANNAWVYATKFAPGS 267
           ENLLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 ENLLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. ExPASy TrEMBL
Match: A0A0A0L6I8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G099680 PE=3 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 5.6e-147
Identity = 253/262 (96.56%), Postives = 256/262 (97.71%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           ATA +ATLLRATPFLGQ R S QN LRDVVAMGTGKYTM NDLWYGPDRVKYLGPFSAQT
Sbjct: 3   ATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSAQT 62

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD
Sbjct: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 122

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAG+QIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE
Sbjct: 123 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLD+PVANNAWVYATKFAPGS
Sbjct: 243 DHLDDPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. ExPASy TrEMBL
Match: A0A6J1ENC1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436057 PE=3 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 5.6e-147
Identity = 254/262 (96.95%), Postives = 255/262 (97.33%), Query Frame = 0


Query: 5   ATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 64
           ATATS  LLRATPFLGQTR S QN LRDVVAMGT KYTMGNDLWYGPDRVKYLGPFSAQT
Sbjct: 3   ATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSAQT 62

Query: 65  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 124
           PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWLKVD
Sbjct: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVD 122

Query: 125 FKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 184
           FKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE
Sbjct: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182

Query: 185 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 244
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242

Query: 245 DHLDNPVANNAWVYATKFAPGS 267
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 243 DHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Clc10G06230.1 vs. TAIR 10
Match: AT5G54270.1 (light-harvesting chlorophyll B-binding protein 3 )

HSP 1 Score: 498.8 bits (1283), Expect = 2.7e-141
Identity = 236/266 (88.72%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPF 60
           MA+T T +S+++L  T FLGQT+ SS N LRDVV++G+ KYTMGNDLWYGPDRVKYLGPF
Sbjct: 1   MASTFT-SSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPF 60

Query: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 120
           S QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KW
Sbjct: 61  SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 120

Query: 121 LKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180
           ++VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLD
Sbjct: 121 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 180

Query: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
           GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLLDHLDNPVANNAWVYATKFAPGS 267
           ENLLDHLDNPVANNAW +ATKFAPG+
Sbjct: 241 ENLLDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of Clc10G06230.1 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 359.4 bits (921), Expect = 2.5e-99
Identity = 185/269 (68.77%), Postives = 205/269 (76.21%), Query Frame = 0


Query: 7   ATSATLLRATPFLGQTRGSSQNS-LRDVVAMGTGKYTM-------GNDLWYGPDRVKYLG 66
           ATSA  ++ + F GQT     N  LR V   G G+ TM          +WYGPDR KYLG
Sbjct: 2   ATSA--IQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLG 61

Query: 67  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 126
           PFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC  PE+L 
Sbjct: 62  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 121

Query: 127 KWLKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 186
           K   V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G
Sbjct: 122 K-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG 181

Query: 187 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 246
              +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 -GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 247 GPLENLLDHLDNPVANNAWVYATKFAPGS 267
           GP+ENL DHL +PVANNAW YAT F PG+
Sbjct: 242 GPIENLFDHLADPVANNAWSYATNFVPGN 265

[Close]

BLAST of Clc10G06230.1 vs. TAIR 10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2 )

HSP 1 Score: 357.5 bits (916), Expect = 9.6e-99
Identity = 183/268 (68.28%), Postives = 206/268 (76.87%), Query Frame = 0


Query: 7   ATSATLLRATPFLGQTR-GSSQNSLRDVVAMGTGKYTM-------GNDLWYGPDRVKYLG 66
           ATSA  ++ + F GQT    S + ++ V  +G G+ TM          +WYGPDR KYLG
Sbjct: 2   ATSA--IQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLG 61

Query: 67  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 126
           PFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC  PE+L 
Sbjct: 62  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 121

Query: 127 KWLKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 186
           K   V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G
Sbjct: 122 K-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG 181

Query: 187 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 246
              +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 -GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 247 GPLENLLDHLDNPVANNAWVYATKFAPG 266
           GP+ENL DHL +PVANNAW YAT F PG
Sbjct: 242 GPIENLFDHLADPVANNAWSYATNFVPG 264

[Close]

BLAST of Clc10G06230.1 vs. TAIR 10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3 )

HSP 1 Score: 352.4 bits (903), Expect = 3.1e-97
Identity = 181/269 (67.29%), Postives = 203/269 (75.46%), Query Frame = 0


Query: 7   ATSATLLRATPFLGQTRGSSQNSLRDVV--AMGTGKYTM-------GNDLWYGPDRVKYL 66
           ATSA  ++ + F GQT     N L   +  + G G+  M          +WYGPDR KYL
Sbjct: 2   ATSA--IQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYL 61

Query: 67  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 126
           GPFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC  PE+L
Sbjct: 62  GPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEIL 121

Query: 127 EKWLKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 186
            K   V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI 
Sbjct: 122 SK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIG 181

Query: 187 GLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 246
           G   +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 182 G-GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTG 241

Query: 247 KGPLENLLDHLDNPVANNAWVYATKFAPG 266
           KGP+ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 KGPIENLFDHIADPVANNAWAYATNFVPG 265

[Close]

BLAST of Clc10G06230.1 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 350.9 bits (899), Expect = 9.0e-97
Identity = 174/266 (65.41%), Postives = 203/266 (76.32%), Query Frame = 0


Query: 1   MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPF 60
           MA ++ A +   ++ +P   +  GS + ++R  VA   G        WYG DRVKYLGPF
Sbjct: 6   MALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGP---SGSPWYGSDRVKYLGPF 65

Query: 61  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 120
           S ++PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + 
Sbjct: 66  SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR- 125

Query: 121 LKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 180
             V F E VWFKAG+QIF++GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G  
Sbjct: 126 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 185

Query: 181 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240
            +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 186 PLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 245

Query: 241 LENLLDHLDNPVANNAWVYATKFAPG 266
           +ENL DHL +PV NNAW +AT F PG
Sbjct: 246 IENLADHLADPVNNNAWAFATNFVPG 266

The following BLAST results are available for this feature:

BLAST of Clc10G06230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452292.1	1.5e-149	98.47	PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo] >KAA...	[more]
XP_023553506.1	8.0e-148	96.62	chlorophyll a-b binding protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022985252.1	6.8e-147	96.62	chlorophyll a-b binding protein 13, chloroplastic [Cucurbita maxima]	[more]
KAG6577394.1	1.2e-146	96.95	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022929511.1	1.2e-146	96.95	chlorophyll a-b binding protein 13, chloroplastic [Cucurbita moschata]	[more]

BLAST of Clc10G06230.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27489	4.4e-141	90.46	Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q9S7M0	3.8e-140	88.72	Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P27523	1.4e-134	85.82	Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulg...	[more]
P14278	5.9e-101	70.61	Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P12328	3.8e-100	69.06	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba OX...	[more]

BLAST of Clc10G06230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY25	7.1e-150	98.47	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BUM8	7.1e-150	98.47	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1J4D4	3.3e-147	96.62	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L6I8	5.6e-147	96.56	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1ENC1	5.6e-147	96.95	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Clc10G06230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54270.1	2.7e-141	88.72	light-harvesting chlorophyll B-binding protein 3	[more]
AT2G05100.1	2.5e-99	68.77	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	9.6e-99	68.28	photosystem II light harvesting complex gene 2.2	[more]
AT3G27690.1	3.1e-97	67.29	photosystem II light harvesting complex gene 2.3	[more]
AT1G29930.1	9.0e-97	65.41	chlorophyll A/B binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..232 e-value: 8.9E-50 score: 169.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 55..259 e-value: 1.0E-91 score: 308.3
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 6..266
None	No IPR available	PANTHER	PTHR21649:SF129	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 6..266
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 47..263

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc10G06230	Clc10G06230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G06230.1-exon	Clc10G06230.1-exon-ClcChr10:8211399..8211753	exon
Clc10G06230.1-exon	Clc10G06230.1-exon-ClcChr10:8211866..8212027	exon
Clc10G06230.1-exon	Clc10G06230.1-exon-ClcChr10:8212814..8214188	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G06230.1-five_prime_utr	Clc10G06230.1-five_prime_utr-ClcChr10:8211399..8211624	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G06230.1-cds	Clc10G06230.1-cds-ClcChr10:8211625..8211753	CDS
Clc10G06230.1-cds	Clc10G06230.1-cds-ClcChr10:8211866..8212027	CDS
Clc10G06230.1-cds	Clc10G06230.1-cds-ClcChr10:8212814..8213323	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc10G06230.1-three_prime_utr	Clc10G06230.1-three_prime_utr-ClcChr10:8213324..8214188	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc10G06230.1	Clc10G06230.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009635	response to herbicide
biological_process	GO:0009644	response to high light intensity
cellular_component	GO:0016020	membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009517	PSII associated light-harvesting complex II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019904	protein domain specific binding