Clc09G10970.1 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc09G10970.1
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 9711330 .. 9714054 (-)
Sequence length762
RNA-Seq ExpressionClc09G10970.1
SyntenyClc09G10970.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATATAGCCAAATCTATTAATAATAATAATGAGAAAAAAAAAAAGGAAAACAAGAAAAAAAGGGAACTTGGTTTCATCTTCTTCCCCTCTCCCACACAGCCGCCGCCCCCTTGCTCAGTCTCGTCCGCCGGCGACTGCGCAGCAAACCCACAAGCAGCGGCGGTGACCATAGACTCCGGCGAACTGTCTTTGTGCATCAGACGTAGCGCTCTTGCGCGTTCCGTTGCTCGACGATCGACGGCGGTGGTAGGAAGCCCACACATCTAGCTTGCGACGCGGGCACCCACTTCAGACGCCCTTGCTCAGACCTTCGAAACAACGTGTCTTTCCGTTTCGACGGGTTTCGGCGCTGACCCACACCCCGATTGGTCTCAAATCAGTTTACCCATAACTTTTAAGGTTCAGTTCTGCATGTTCGATTGTTTTTTAACACCAACCAGCAAGGATCAGAGCCTTTTCGGTAAGATTTTGTAAGGATAGTTGCTTTAATTTTCGTTTCGAATTCAATTTAAGTGTTCAATAATTCTGAATCACTAGAACTCATCGGCTGTTATGTTTGGGTGTTTAATTAGGTTTCATAAGTATTAAACATGCTTTGAGCCGTTTCAGACTCAATTAATGCATGGTAGGCTAGTCTTTGACTTGTGAAAGTTCAGTTTTGGGCTTATTCGGAGTGATTGGTTAAGGTTTATGGTTGATTTTAGATATGAATGTCACTCTCTCGATTTCAGTTAAGGTTTTTGAATTGAGTTCAAATTTTTAAACTCTGTCTTGATTGTTTAGACCTCGAGGAAGTTGACATTTATTTAAAAGTGAATTTTGAATTGAGAATTGTAGGATGGTCATTCCACATCCATTCCAAAATATAAATTTTAGTTTAATTATGTTTTTACTATTGTGATTTGACAAATATTTGAAAGTATGTTTTGAATGTTTGGAAGTGAAATGGAAATTGATTGAAATTGTTTTGTATGTTTTAGTGGTTTTTGCTAAGTAAGAGTACTTGACTGTCTTGAAAGATTTTTGGAAGTGTTTTGATTGACTTCGAATTATCAGTGTTTCTGGTTTTGTTACTTCTGAAAAATTATTGAAAAGTTTGATTGGTTTAATCTGATGAATTCTCATGTTGAAATTGTCATTGAACTATATGTTTTGTTTGAGATGTTTATGAAAGAATTTGACAATTTGTTCAATTTGATAGGGCTACTCAGATATGCCAAATTATGTTTTGGGGATTGTATGCTTATTTGTTGTAGTAGCCAAAATAGGATTTGACCGTATGTGATCTGTTTGAAACTTATTTGTGAGAAGGCATTTTTTAGTGGTTTGGCATTCCTTTGGAACGAAGATTCATGTGTGTGTGTTGCACTCATACGGTCTTGCACTTAAGTAATTGACTATTGTTTTTGTCGACTGCTAATCGACATCTTTGACTGAATTAATGAATGACTGGTGTTACCAATGGGTAACCACATATGTCTGAGCTACTTCAACTATGCATCTTTCCTTCCCTGTAACTGAAGTGTTGATTGATTGAAAGAGTTCTAACTGATTGAAAGTGCAAATCGTTTGAAGGTTTTGTTTTGTTTAAAGTATTGAATGTTTTGGTTTTATTGAAAAGTTTATTGAAAAGCACCTGCAGAGATACAAATATGATAGCACATAACCATACATCAATTTCTAACAAGCTAAGATACAGATATGTTGAGAATCATTTTTTTTAAAAAAAAATCTAGGATATATGTAAATTTAATAAAAAAATATCAAATGTAATCCACTAAAAAGCATAAAATGTAAGTTAATGTCAATAGTACAAAATACAACACAAACACTAAAATACAATACAGAAAGCAACATCAGTGATATTGAAATACAATAGTCAATAGAATACAATAGAAAATGTTGGTGGGGCACCGAAGTTAGATTGATCAGAGAAGAAGAAGATTAGTGGGAGAAGTAGGAAGATTGGTGAAAGACTTCTTTGTTGAATGGTTGAAGATATTTAAGTGGATTATTTTTGTGTGACTTTGTGAGGGACTTAGGGATGAAGATAAATATTAGATGATTCCAGGTTTTTTTTTTCTTTTTTTGGGCGGTGAACTTTAATTTTTAAATAGGCTGCTTAGTTTTGGACTGGGAAAGATTAGATAAGTTGCTATTCCTTTTTATTATAAAGGTCTAATGTGTCCCCTTCATATCTGGAAAGAGACAGGCATATCCAATAGGGTTGGTAGAAAAACTTGCAGGGTCGAGAAATCCTCGGTTTGACTGGGGATGGGGTCAAACCAAGGACCTTTTCCGGGTACCCGTCCGAGGATGGGGCAGGGATGGGGAGGGTATCCTGCCTCGACTCCGACCCCGATCCCGACCCCGAATCCCCGACACCAACTTGGTCCAAATAAAAATTAATTTTATATATATAAAAGATGTTATGGTTGACTCTTTGCGCTCTTGCTCTCGCTCTCCCATCCTTTCCTCCCTCACAATCACTCTATCTCTCTCGCTCTCTCTCGCTCGCTCTCGCTCTCTCTCGCTCTCTCTTGGGGAATGGGTCCCCGACGAGGAATCCCCATCCCCATCCCTGCCCCCGCTTACAAATGGCGAGGACGGGGGCGGGGATGGGGGTAAATTCCCCCCACAGGGGCGGGGACGGGGAACCCCCACCTGCCTTACCCCGGCCCCGTTGCCAACCCTAGCATCCAATATATTACGTATCTAA

mRNA sequence

ATGCCGCCGCCCCCTTGCTCAGTCTCGTCCGCCGGCGACTGCGCAGCAAACCCACAAGCAGCGGCGGTGACCATAGACTCCGGCGAACTGTCTTTGTGCATCAGACGTAGCGCTCTTGCGCACGCCCTTGCTCAGACCTTCGAAACAACGTGTCTTTCCGTTTCGACGGGTTTCGGCGCTGACCCACACCCCGATTGGTCTCAAATCAGTTTACCCATAACTTTTAAGGTTCAGTTCTGCATGTTCGATTGTTTTTTAACACCAACCAGCAAGGATCAGAGCCTTTTCGGGTCGAGAAATCCTCGGTTTGACTGGGGATGGGGTCAAACCAAGGACCTTTTCCGGGTACCCGTCCGAGGATGGGGCAGGGATGGGGAGGGTATCCTGCCTCGACTCCGACCCCGATCCCGACCCCGAATCCCCGACACCAACTTGGTCCAAATAAAAATTAATTTTATATATATAAAAGATGTTATGGTTGACTCTTTGCGCTCTTGCTCTCGCTCTCCCATCCTTTCCTCCCTCACAATCACTCTATCTCTCTCGCTCTCTCTCGCTCGCTCTCGCTCTCTCTCGCTCTCTCTTGGGGAATGGGTCCCCGACGAGGAATCCCCATCCCCATCCCTGCCCCCGCTTACAAATGGCGAGGACGGGGGCGGGGATGGGGGTAAATTCCCCCCACAGGGGCGGGGACGGGGAACCCCCACCTGCCTTACCCCGGCCCCGTTGCCAACCCTAGCATCCAATATATTACGTATCTAA

Coding sequence (CDS)

ATGCCGCCGCCCCCTTGCTCAGTCTCGTCCGCCGGCGACTGCGCAGCAAACCCACAAGCAGCGGCGGTGACCATAGACTCCGGCGAACTGTCTTTGTGCATCAGACGTAGCGCTCTTGCGCACGCCCTTGCTCAGACCTTCGAAACAACGTGTCTTTCCGTTTCGACGGGTTTCGGCGCTGACCCACACCCCGATTGGTCTCAAATCAGTTTACCCATAACTTTTAAGGTTCAGTTCTGCATGTTCGATTGTTTTTTAACACCAACCAGCAAGGATCAGAGCCTTTTCGGGTCGAGAAATCCTCGGTTTGACTGGGGATGGGGTCAAACCAAGGACCTTTTCCGGGTACCCGTCCGAGGATGGGGCAGGGATGGGGAGGGTATCCTGCCTCGACTCCGACCCCGATCCCGACCCCGAATCCCCGACACCAACTTGGTCCAAATAAAAATTAATTTTATATATATAAAAGATGTTATGGTTGACTCTTTGCGCTCTTGCTCTCGCTCTCCCATCCTTTCCTCCCTCACAATCACTCTATCTCTCTCGCTCTCTCTCGCTCGCTCTCGCTCTCTCTCGCTCTCTCTTGGGGAATGGGTCCCCGACGAGGAATCCCCATCCCCATCCCTGCCCCCGCTTACAAATGGCGAGGACGGGGGCGGGGATGGGGGTAAATTCCCCCCACAGGGGCGGGGACGGGGAACCCCCACCTGCCTTACCCCGGCCCCGTTGCCAACCCTAGCATCCAATATATTACGTATCTAA

Protein sequence

MPPPPCSVSSAGDCAANPQAAAVTIDSGELSLCIRRSALAHALAQTFETTCLSVSTGFGADPHPDWSQISLPITFKVQFCMFDCFLTPTSKDQSLFGSRNPRFDWGWGQTKDLFRVPVRGWGRDGEGILPRLRPRSRPRIPDTNLVQIKINFIYIKDVMVDSLRSCSRSPILSSLTITLSLSLSLARSRSLSLSLGEWVPDEESPSPSLPPLTNGEDGGGDGGKFPPQGRGRGTPTCLTPAPLPTLASNILRI
Homology
The following BLAST results are available for this feature:
BLAST of Clc09G10970.1 vs.
Match NameE-valueIdentityDescription
BLAST of Clc09G10970.1 vs.
Match NameE-valueIdentityDescription
BLAST of Clc09G10970.1 vs.
Match NameE-valueIdentityDescription
BLAST of Clc09G10970.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..243

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc09G10970Clc09G10970gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc09G10970.1-exonClc09G10970.1-exon-ClcChr09:9711330..9711802exon
Clc09G10970.1-exonClc09G10970.1-exon-ClcChr09:9713589..9713756exon
Clc09G10970.1-exonClc09G10970.1-exon-ClcChr09:9713832..9713949exon
Clc09G10970.1-exonClc09G10970.1-exon-ClcChr09:9714052..9714054exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc09G10970.1-cdsClc09G10970.1-cds-ClcChr09:9711330..9711802CDS
Clc09G10970.1-cdsClc09G10970.1-cds-ClcChr09:9713589..9713756CDS
Clc09G10970.1-cdsClc09G10970.1-cds-ClcChr09:9713832..9713949CDS
Clc09G10970.1-cdsClc09G10970.1-cds-ClcChr09:9714052..9714054CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc09G10970.1Clc09G10970.1-proteinpolypeptide