Clc06G17720.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc06G17720.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Germin-like protein
Location	ClcChr06: 28261598 .. 28262310 (-)
Sequence length	713
RNA-Seq Expression	Clc06G17720.1
Synteny	Clc06G17720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAGCTCACCTCTAAAAATGCTTGCTTCCTTCATAATTATTATACTCTTGCTTCTTCCTTATCCTTCTTCGTCCACCGACCCCGATCCGTTACAGGACTTCTGTGTAGCTGATTTAAATGCAACTGTTTCTCTTAGTGGTTTTCCTTGCAAGCCAGCTTCAGAAGTTACTGCAGATGATTTCTTCTTTGATGGATTGAGTAAAGAAGGCAACACAGACAATCCTTTTGGTTTTGGCCTCACACCAGGAAATGTTTTTGCATTGCCAGGACTCAATACACTTGGCCTATCCACGAACCGTATCGACCTTGCTCCGGGAGGAATGAATCCACCTCACTTGCATCCTCGTGCCTCTGAAATCGTTATCGTCATTAAAGGGAAGGTTCTTGTTGGGTTTATGACAGTAGATAATAAGTATTATCATAAGATTTTGACTGTGGGGCAGGTGTTCATTGTTCCTAGAGCGCTTGTTCATTTCCAGTATAATGTTGGACATAGGAAAGCTATTGTGCTTGCAGGTTTCAACAGTCAGTTGCCAGGAGGCGTGCTTGTCGCCGGAAATTTGTTTGCTTCAAATCCTCCGATCCCTGTTAAAATTCTGTCTAAAGCCTTACTAGTTGATGATGGTATTATCAACACCATAAAGTCTGAGTTTGCTGCTTAGTTTTAGTCTCAGTTTGTCCATTTTATTGAATATTTTGGTACTTTTCTG

mRNA sequence

TGAAAAGCTCACCTCTAAAAATGCTTGCTTCCTTCATAATTATTATACTCTTGCTTCTTCCTTATCCTTCTTCGTCCACCGACCCCGATCCGTTACAGGACTTCTGTGTAGCTGATTTAAATGCAACTGTTTCTCTTAGTGGTTTTCCTTGCAAGCCAGCTTCAGAAGTTACTGCAGATGATTTCTTCTTTGATGGATTGAGTAAAGAAGGCAACACAGACAATCCTTTTGGTTTTGGCCTCACACCAGGAAATGTTTTTGCATTGCCAGGACTCAATACACTTGGCCTATCCACGAACCGTATCGACCTTGCTCCGGGAGGAATGAATCCACCTCACTTGCATCCTCGTGCCTCTGAAATCGTTATCGTCATTAAAGGGAAGGTTCTTGTTGGGTTTATGACAGTAGATAATAAGTATTATCATAAGATTTTGACTGTGGGGCAGGTGTTCATTGTTCCTAGAGCGCTTGTTCATTTCCAGTATAATGTTGGACATAGGAAAGCTATTGTGCTTGCAGGTTTCAACAGTCAGTTGCCAGGAGGCGTGCTTGTCGCCGGAAATTTGTTTGCTTCAAATCCTCCGATCCCTGTTAAAATTCTGTCTAAAGCCTTACTAGTTGATGATGGTATTATCAACACCATAAAGTCTGAGTTTGCTGCTTAGTTTTAGTCTCAGTTTGTCCATTTTATTGAATATTTTGGTACTTTTCTG

Coding sequence (CDS)

ATGCTTGCTTCCTTCATAATTATTATACTCTTGCTTCTTCCTTATCCTTCTTCGTCCACCGACCCCGATCCGTTACAGGACTTCTGTGTAGCTGATTTAAATGCAACTGTTTCTCTTAGTGGTTTTCCTTGCAAGCCAGCTTCAGAAGTTACTGCAGATGATTTCTTCTTTGATGGATTGAGTAAAGAAGGCAACACAGACAATCCTTTTGGTTTTGGCCTCACACCAGGAAATGTTTTTGCATTGCCAGGACTCAATACACTTGGCCTATCCACGAACCGTATCGACCTTGCTCCGGGAGGAATGAATCCACCTCACTTGCATCCTCGTGCCTCTGAAATCGTTATCGTCATTAAAGGGAAGGTTCTTGTTGGGTTTATGACAGTAGATAATAAGTATTATCATAAGATTTTGACTGTGGGGCAGGTGTTCATTGTTCCTAGAGCGCTTGTTCATTTCCAGTATAATGTTGGACATAGGAAAGCTATTGTGCTTGCAGGTTTCAACAGTCAGTTGCCAGGAGGCGTGCTTGTCGCCGGAAATTTGTTTGCTTCAAATCCTCCGATCCCTGTTAAAATTCTGTCTAAAGCCTTACTAGTTGATGATGGTATTATCAACACCATAAAGTCTGAGTTTGCTGCTTAG

Protein sequence

MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASNPPIPVKILSKALLVDDGIINTIKSEFAA

Homology

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BLAST of Clc06G17720.1 vs. NCBI nr
Match: XP_038880093.1 (germin-like protein subfamily T member 2 [Benincasa hispida])

HSP 1 Score: 374.0 bits (959), Expect = 8.6e-100
Identity = 182/212 (85.85%), Postives = 197/212 (92.92%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           ML     IIL +LP+PS STDPDPLQDFCVADLNATVS+SGFPCKP S+V+ADDFFFDGL
Sbjct: 1   MLLIIPFIILFVLPHPSLSTDPDPLQDFCVADLNATVSVSGFPCKPISKVSADDFFFDGL 60

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNT+NPFGF LT GNV  LPGLNTLGLS NRIDLAPGGMNPPHLHPRASEIVIV+KG
Sbjct: 61  SKEGNTNNPFGFALTLGNVLTLPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKG 120

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           KVLVGF+TVDNKYYHK+L VG+VFI+PRALVHFQYNVGH+KA+VLAGFNSQLPGGVLVAG
Sbjct: 121 KVLVGFVTVDNKYYHKVLRVGEVFIIPRALVHFQYNVGHKKAVVLAGFNSQLPGGVLVAG 180

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           NLFASNPPIPVKILSKALLV+D +INTIKSEF
Sbjct: 181 NLFASNPPIPVKILSKALLVNDDVINTIKSEF 212

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BLAST of Clc06G17720.1 vs. NCBI nr
Match: KAA0057910.1 (germin-like protein subfamily T member 1 [Cucumis melo var. makuwa] >TYJ98598.1 germin-like protein subfamily T member 1 [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 4.7e-98
Identity = 180/212 (84.91%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SFII I  LLPYPS STDPDPLQDFCVADLNATVS+SGFPCKP S+VT +DFFFDGL
Sbjct: 2   LLISFIIFI--LLPYPSISTDPDPLQDFCVADLNATVSVSGFPCKPISKVTVEDFFFDGL 61

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNT NPFGFGLTPGNV  LPGLNTLGLS NRIDLAPGGMNPPHLHPRASEIVIV+KG
Sbjct: 62  SKEGNTKNPFGFGLTPGNVLKLPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKG 121

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           +VLVGF+TVDN YYHK+L VG+VFI+PRALVHFQYNVGHRKA+VLAGFNSQLPGGVLVAG
Sbjct: 122 RVLVGFLTVDNVYYHKVLKVGEVFIIPRALVHFQYNVGHRKAVVLAGFNSQLPGGVLVAG 181

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           NLFASNPPIP  ILSKALLV++ +I TIKS+F
Sbjct: 182 NLFASNPPIPNVILSKALLVNEDVIKTIKSDF 211

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BLAST of Clc06G17720.1 vs. NCBI nr
Match: XP_008453674.2 (PREDICTED: germin-like protein subfamily T member 1 [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 4.7e-98
Identity = 180/212 (84.91%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SFII I  LLPYPS STDPDPLQDFCVADLNATVS+SGFPCKP S+VT +DFFFDGL
Sbjct: 10  LLISFIIFI--LLPYPSISTDPDPLQDFCVADLNATVSVSGFPCKPISKVTVEDFFFDGL 69

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNT NPFGFGLTPGNV  LPGLNTLGLS NRIDLAPGGMNPPHLHPRASEIVIV+KG
Sbjct: 70  SKEGNTKNPFGFGLTPGNVLKLPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKG 129

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           +VLVGF+TVDN YYHK+L VG+VFI+PRALVHFQYNVGHRKA+VLAGFNSQLPGGVLVAG
Sbjct: 130 RVLVGFLTVDNVYYHKVLKVGEVFIIPRALVHFQYNVGHRKAVVLAGFNSQLPGGVLVAG 189

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           NLFASNPPIP  ILSKALLV++ +I TIKS+F
Sbjct: 190 NLFASNPPIPNVILSKALLVNEDVIKTIKSDF 219

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BLAST of Clc06G17720.1 vs. NCBI nr
Match: KGN63631.1 (hypothetical protein Csa_014050 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 1.4e-97
Identity = 177/212 (83.49%), Postives = 196/212 (92.45%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SF  I L+LLP+PSSSTDPDPLQDFCVADLNATVS++GFPCKP SEVT DDFF+DGL
Sbjct: 2   LLVSF--IFLILLPHPSSSTDPDPLQDFCVADLNATVSVTGFPCKPISEVTVDDFFYDGL 61

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNT NPFGFGLTPGNV ALPGLNTLGLS NRIDLAPGGMNPPHLHPRASEIVIV+KG
Sbjct: 62  SKEGNTKNPFGFGLTPGNVHALPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKG 121

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           +VLVGF+TVDN YYHK+L VG++FI+PRALVHFQYNVG +KA+VLAGFNSQLPGGVLVAG
Sbjct: 122 RVLVGFLTVDNVYYHKVLKVGELFIIPRALVHFQYNVGRKKAVVLAGFNSQLPGGVLVAG 181

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           NLFASNPPIP KILSKAL V+D ++ TIKS+F
Sbjct: 182 NLFASNPPIPNKILSKALQVNDDVVKTIKSDF 211

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BLAST of Clc06G17720.1 vs. NCBI nr
Match: XP_038879323.1 (germin-like protein subfamily T member 2 [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 5.2e-89
Identity = 165/213 (77.46%), Postives = 185/213 (86.85%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           ML+ F  IILLLLPYPS S D DPLQDFCVADLNAT+SL+GFPCKP SEVTADDFFFDGL
Sbjct: 11  MLSCF--IILLLLPYPSLSADLDPLQDFCVADLNATISLNGFPCKPVSEVTADDFFFDGL 70

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNTDNPFGFG+T GNV A PGLNTLGLS NR+DLA GG+N PH HPRASE ++VIKG
Sbjct: 71  SKEGNTDNPFGFGVTQGNVLAFPGLNTLGLSMNRVDLAKGGINAPHSHPRASESIVVIKG 130

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           KVLVGF++  N YY+K+LTVGQ+FIVPR LVHFQYNVGH KAI+L  FNSQLPG V+V+ 
Sbjct: 131 KVLVGFVSTRNVYYYKVLTVGQMFIVPRGLVHFQYNVGHSKAILLTAFNSQLPGAVVVSR 190

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEFA 214
            LFASNPPIPVKIL+K   VDDG+IN+IKS+FA
Sbjct: 191 TLFASNPPIPVKILTKTFQVDDGVINSIKSKFA 221

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BLAST of Clc06G17720.1 vs. ExPASy Swiss-Prot
Match: Q9LMC9 (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana OX=3702 GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.3e-60
Identity = 112/213 (52.58%), Postives = 148/213 (69.48%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +  SF+++I + +  PS S+D DPLQDFCV DL A+ S++GFPCK  S V+A DFFF GL
Sbjct: 10  LFRSFLLVICVFV-IPSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGL 69

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
               NT  P G  ++P NV   PGLNTLGLS N ++ APGG+NPPH HPRA+E  +VI+G
Sbjct: 70  GGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEG 129

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
            V VGF+T +N  + K+L  G++F+VPR LVHFQ+NVG  KA ++  FNSQLPG  ++  
Sbjct: 130 SVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPS 189

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEFA 214
            LF SNP IP  +L+K    DD  +N +KS+FA
Sbjct: 190 TLFGSNPTIPNAVLTKTFRTDDVTVNKLKSKFA 219

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BLAST of Clc06G17720.1 vs. ExPASy Swiss-Prot
Match: P92995 (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana OX=3702 GN=GLP1 PE=2 SV=2)

HSP 1 Score: 230.3 bits (586), Expect = 2.0e-59
Identity = 110/213 (51.64%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SF+++  L +  PS S+D DPLQDFCV DL A+ S++GFPCK  S V+A DFF+ GL
Sbjct: 10  LLRSFLLMFCLFV-IPSLSSDSDPLQDFCVGDLKASASINGFPCK--SAVSASDFFYSGL 69

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
               +T NP G  + P NV   PGLNTLG+S N ++LAPGG+NPPHLHPRA+E+  VI+G
Sbjct: 70  GGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEG 129

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
            V VGF++ +N  + K+L  G+ F++PR LVHFQ+NVG  KA ++  FNSQLPG V++  
Sbjct: 130 SVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPS 189

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEFA 214
            LF S P IP  +L++A   DD  +  +KS+FA
Sbjct: 190 TLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKFA 219

[Close]

BLAST of Clc06G17720.1 vs. ExPASy Swiss-Prot
Match: Q7F731 (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=GER4 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.9e-58
Identity = 112/204 (54.90%), Postives = 143/204 (70.10%), Query Frame = 0


Query: 9   ILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGNTDN 68
           ++L L  PS + DPD LQD CVADL + V L+GFPCK  + VTADDFFF GL   GNT+N
Sbjct: 14  VVLALAAPSLAGDPDMLQDVCVADLASPVKLNGFPCK--ANVTADDFFFAGLKNPGNTNN 73

Query: 69  PFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGFMT 128
           P G  +T  NV + PG+NTLG+S  RID APGG NPPH HPRA+EI+ V++G + VGF+T
Sbjct: 74  PAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFIT 133

Query: 129 VDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASNPP 188
             NK + K +T G+VF+ PR LVHFQ N GH  A V+A FNSQL G   +A  LFA+ PP
Sbjct: 134 TANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPP 193

Query: 189 IPVKILSKALLVDDGIINTIKSEF 213
           +P  +L+KA  VD   ++ IK++F
Sbjct: 194 VPSDVLAKAFRVDVPQVDAIKAKF 215

[Close]

BLAST of Clc06G17720.1 vs. ExPASy Swiss-Prot
Match: Q10BU2 (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GER7 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-56
Identity = 109/211 (51.66%), Postives = 146/211 (69.19%), Query Frame = 0


Query: 6   IIIILLLLPYPSSSTDPDPLQDFCV----ADLNATVSLSGFPCKPASEVTADDFFFDGLS 65
           + + +L +   + + DP+P+QDFCV    A   A+ +  GFPCKPAS V +DDFFF GL+
Sbjct: 21  LTVAVLAVLASTCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLA 80

Query: 66  KEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGK 125
             G+TDNPFG  L PGNV A P LNTLG++ NR+DLAPGG+NP H HPRA+E+V VI G+
Sbjct: 81  AAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGR 140

Query: 126 VLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGN 185
           +LVGF++   KYY K++  G+ F +PR L+HFQYN G+  A  +  FNSQLPG V  A  
Sbjct: 141 MLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATA 200

Query: 186 LFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           LF ++P IP  +L+K+  VD  II  +KS+F
Sbjct: 201 LFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231

[Close]

BLAST of Clc06G17720.1 vs. ExPASy Swiss-Prot
Match: Q6I544 (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.3e-55
Identity = 109/207 (52.66%), Postives = 144/207 (69.57%), Query Frame = 0


Query: 7   IIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGNT 66
           +++L LLP PS++ DPD LQD CVADL + V ++GF CK A  VT DDF+F GL+  GNT
Sbjct: 13  VLLLALLPTPSTAGDPDLLQDICVADLTSAVKVNGFACKAA--VTEDDFYFKGLAAAGNT 72

Query: 67  DNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGF 126
           +N +G  +T  NV  LPGLNTLG+S +RID APGG+NPPH HPRA+E+V V++G + VGF
Sbjct: 73  NNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGF 132

Query: 127 MTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASN 186
           +T  NK Y K ++ G VF+ PR L+HFQ N G   A V++ FNSQLPG   +A  LFA++
Sbjct: 133 ITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAAS 192

Query: 187 PPIPVKILSKALLVDDGIINTIKSEFA 214
           P +P  +L+KA  V    +  IKS  A
Sbjct: 193 PEVPDGVLTKAFQVGTKEVEKIKSRLA 217

[Close]

BLAST of Clc06G17720.1 vs. ExPASy TrEMBL
Match: A0A5A7URX6 (Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002190 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.3e-98
Identity = 180/212 (84.91%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SFII I  LLPYPS STDPDPLQDFCVADLNATVS+SGFPCKP S+VT +DFFFDGL
Sbjct: 2   LLISFIIFI--LLPYPSISTDPDPLQDFCVADLNATVSVSGFPCKPISKVTVEDFFFDGL 61

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNT NPFGFGLTPGNV  LPGLNTLGLS NRIDLAPGGMNPPHLHPRASEIVIV+KG
Sbjct: 62  SKEGNTKNPFGFGLTPGNVLKLPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKG 121

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           +VLVGF+TVDN YYHK+L VG+VFI+PRALVHFQYNVGHRKA+VLAGFNSQLPGGVLVAG
Sbjct: 122 RVLVGFLTVDNVYYHKVLKVGEVFIIPRALVHFQYNVGHRKAVVLAGFNSQLPGGVLVAG 181

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           NLFASNPPIP  ILSKALLV++ +I TIKS+F
Sbjct: 182 NLFASNPPIPNVILSKALLVNEDVIKTIKSDF 211

[Close]

BLAST of Clc06G17720.1 vs. ExPASy TrEMBL
Match: A0A1S3BWX7 (Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103494323 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.3e-98
Identity = 180/212 (84.91%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SFII I  LLPYPS STDPDPLQDFCVADLNATVS+SGFPCKP S+VT +DFFFDGL
Sbjct: 10  LLISFIIFI--LLPYPSISTDPDPLQDFCVADLNATVSVSGFPCKPISKVTVEDFFFDGL 69

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNT NPFGFGLTPGNV  LPGLNTLGLS NRIDLAPGGMNPPHLHPRASEIVIV+KG
Sbjct: 70  SKEGNTKNPFGFGLTPGNVLKLPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKG 129

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           +VLVGF+TVDN YYHK+L VG+VFI+PRALVHFQYNVGHRKA+VLAGFNSQLPGGVLVAG
Sbjct: 130 RVLVGFLTVDNVYYHKVLKVGEVFIIPRALVHFQYNVGHRKAVVLAGFNSQLPGGVLVAG 189

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           NLFASNPPIP  ILSKALLV++ +I TIKS+F
Sbjct: 190 NLFASNPPIPNVILSKALLVNEDVIKTIKSDF 219

[Close]

BLAST of Clc06G17720.1 vs. ExPASy TrEMBL
Match: A0A0A0LUD9 (Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G007900 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.6e-98
Identity = 177/212 (83.49%), Postives = 196/212 (92.45%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SF  I L+LLP+PSSSTDPDPLQDFCVADLNATVS++GFPCKP SEVT DDFF+DGL
Sbjct: 2   LLVSF--IFLILLPHPSSSTDPDPLQDFCVADLNATVSVTGFPCKPISEVTVDDFFYDGL 61

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
           SKEGNT NPFGFGLTPGNV ALPGLNTLGLS NRIDLAPGGMNPPHLHPRASEIVIV+KG
Sbjct: 62  SKEGNTKNPFGFGLTPGNVHALPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKG 121

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
           +VLVGF+TVDN YYHK+L VG++FI+PRALVHFQYNVG +KA+VLAGFNSQLPGGVLVAG
Sbjct: 122 RVLVGFLTVDNVYYHKVLKVGELFIIPRALVHFQYNVGRKKAVVLAGFNSQLPGGVLVAG 181

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           NLFASNPPIP KILSKAL V+D ++ TIKS+F
Sbjct: 182 NLFASNPPIPNKILSKALQVNDDVVKTIKSDF 211

[Close]

BLAST of Clc06G17720.1 vs. ExPASy TrEMBL
Match: A0A6J1JCY5 (Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485659 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.2e-88
Identity = 157/207 (75.85%), Postives = 182/207 (87.92%), Query Frame = 0


Query: 7   IIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGNT 66
           +IILLLLPYPS S DPDPLQ+FCVADLNATVSL+GFPCKP SEVTADDFFFDGLSKEGNT
Sbjct: 15  LIILLLLPYPSLSADPDPLQNFCVADLNATVSLNGFPCKPVSEVTADDFFFDGLSKEGNT 74

Query: 67  DNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGF 126
           DNPFGFG+T GNV + PGLNTLGLS NR+DLA GG+N PH HPRASE V+VIKG+VLVGF
Sbjct: 75  DNPFGFGVTQGNVLSFPGLNTLGLSMNRVDLARGGINAPHSHPRASESVVVIKGEVLVGF 134

Query: 127 MTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASN 186
           ++  N YY+K+LT G++FI+PR LVHFQYNVGH KAI+L  FNSQLPG V+V+  LFASN
Sbjct: 135 VSTSNVYYYKVLTEGEMFIIPRGLVHFQYNVGHSKAILLTAFNSQLPGAVIVSQTLFASN 194

Query: 187 PPIPVKILSKALLVDDGIINTIKSEFA 214
           PP+PV+IL+K   VDDG+IN+IKS+FA
Sbjct: 195 PPVPVEILTKTFQVDDGVINSIKSKFA 221

[Close]

BLAST of Clc06G17720.1 vs. ExPASy TrEMBL
Match: A0A5D3BHJ0 (Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002180 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.0e-87
Identity = 159/205 (77.56%), Postives = 175/205 (85.37%), Query Frame = 0


Query: 9   ILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGNTDN 68
           ILLLLPYPS S DPDPLQDFCV DLNATVSL+GFPCKP SEVTADDFFFDGLSKEGNTDN
Sbjct: 7   ILLLLPYPSLSADPDPLQDFCVGDLNATVSLNGFPCKPVSEVTADDFFFDGLSKEGNTDN 66

Query: 69  PFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGFMT 128
           PFGFG+T GNV A PGLNTLGLS NR+DLAPGG+N PH HPRASE ++VIKGKVLVGF++
Sbjct: 67  PFGFGVTQGNVLAFPGLNTLGLSMNRVDLAPGGINAPHSHPRASESIVVIKGKVLVGFVS 126

Query: 129 VDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASNPP 188
             N YY K+LTVGQ+FIVPR LVHFQYNVG  KAI++  FNSQLPG V+V+  LFASNPP
Sbjct: 127 TSNVYYSKVLTVGQMFIVPRGLVHFQYNVGRGKAILITAFNSQLPGAVVVSRTLFASNPP 186

Query: 189 IPVKILSKALLVDDGIINTIKSEFA 214
           IPVKIL+K   VD  +IN IKS FA
Sbjct: 187 IPVKILTKTFQVDASVINGIKSRFA 211

[Close]

BLAST of Clc06G17720.1 vs. TAIR 10
Match: AT1G18980.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-61
Identity = 112/213 (52.58%), Postives = 148/213 (69.48%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +  SF+++I + +  PS S+D DPLQDFCV DL A+ S++GFPCK  S V+A DFFF GL
Sbjct: 10  LFRSFLLVICVFV-IPSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGL 69

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
               NT  P G  ++P NV   PGLNTLGLS N ++ APGG+NPPH HPRA+E  +VI+G
Sbjct: 70  GGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEG 129

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
            V VGF+T +N  + K+L  G++F+VPR LVHFQ+NVG  KA ++  FNSQLPG  ++  
Sbjct: 130 SVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPS 189

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEFA 214
            LF SNP IP  +L+K    DD  +N +KS+FA
Sbjct: 190 TLFGSNPTIPNAVLTKTFRTDDVTVNKLKSKFA 219

[Close]

BLAST of Clc06G17720.1 vs. TAIR 10
Match: AT1G18970.1 (germin-like protein 4 )

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-60
Identity = 110/213 (51.64%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGL 60
           +L SF+++  L +  PS S+D DPLQDFCV DL A+ S++GFPCK  S V+A DFF+ GL
Sbjct: 10  LLRSFLLMFCLFV-IPSLSSDSDPLQDFCVGDLKASASINGFPCK--SAVSASDFFYSGL 69

Query: 61  SKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKG 120
               +T NP G  + P NV   PGLNTLG+S N ++LAPGG+NPPHLHPRA+E+  VI+G
Sbjct: 70  GGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEG 129

Query: 121 KVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAG 180
            V VGF++ +N  + K+L  G+ F++PR LVHFQ+NVG  KA ++  FNSQLPG V++  
Sbjct: 130 SVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPS 189

Query: 181 NLFASNPPIPVKILSKALLVDDGIINTIKSEFA 214
            LF S P IP  +L++A   DD  +  +KS+FA
Sbjct: 190 TLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKFA 219

[Close]

BLAST of Clc06G17720.1 vs. TAIR 10
Match: AT1G09560.1 (germin-like protein 5 )

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-55
Identity = 111/215 (51.63%), Postives = 143/215 (66.51%), Query Frame = 0


Query: 2   LASFIIIILLLLP----YPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFF 61
           +AS  + +LLLL     + SSS DPD LQD CVADL + + ++GFPCK A+ VT+ DFF 
Sbjct: 1   MASPTLTLLLLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFS 60

Query: 62  DGLSKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIV 121
            GL+K G T+N FG  +T  NV  +PGLNTLG+S +RID APGG+NPPH HPRA+E+V V
Sbjct: 61  QGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFV 120

Query: 122 IKGKVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVL 181
           ++G + VGF+T  NK   + L  G VF  P+ LVHFQ N G   A V+A FNSQLPG   
Sbjct: 121 LEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQS 180

Query: 182 VAGNLFASNPPIPVKILSKALLVDDGIINTIKSEF 213
           +   LF S PP+P  IL++A     G +  IKS+F
Sbjct: 181 LGATLFGSTPPVPDNILAQAFQTSPGTVKHIKSKF 215

[Close]

BLAST of Clc06G17720.1 vs. TAIR 10
Match: AT1G02335.1 (germin-like protein subfamily 2 member 2 precursor )

HSP 1 Score: 198.7 bits (504), Expect = 4.6e-51
Identity = 99/210 (47.14%), Postives = 133/210 (63.33%), Query Frame = 0


Query: 4   SFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKE 63
           S II +  ++     + DPD LQD CVAD +    L+GFPCK    +T  DFFF G+SK 
Sbjct: 7   SIIIALSCIMITSIRAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKP 66

Query: 64  GNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVL 123
              ++  G  +T  NV  +PGLNTL +S  RID APGG+NPPH HPRA+E+V V++G++ 
Sbjct: 67  AVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELE 126

Query: 124 VGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLF 183
           VGF+T  NK + K + +G+VF+ PR LVHFQ N G   A VL+ FNSQLPG   VA  LF
Sbjct: 127 VGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLF 186

Query: 184 ASNPPIPVKILSKALLVDDGIINTIKSEFA 214
           A+ P +P  +L+K   V   +++ IK   A
Sbjct: 187 AAEPALPEDVLTKTFQVGSKMVDKIKERLA 216

[Close]

BLAST of Clc06G17720.1 vs. TAIR 10
Match: AT3G05930.1 (germin-like protein 8 )

HSP 1 Score: 191.8 bits (486), Expect = 5.6e-49
Identity = 99/208 (47.60%), Postives = 135/208 (64.90%), Query Frame = 0


Query: 6   IIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGN 65
           I +  +L+    +  D + LQDFCVADL+  + ++G+PCK  ++VT +DF+F GL+    
Sbjct: 8   IFVTFMLVAAHMALADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAA 67

Query: 66  TDN-PFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLV 125
           T N   G  +T  NV  +PGLNTLG+S +RID APGG+NPPHLHPRASE + V++G++ V
Sbjct: 68  TANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFV 127

Query: 126 GFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFA 185
           GF+T   K   K +  G VF+ P+AL+HFQ N     A VLA F+SQLPG  +V  +LF 
Sbjct: 128 GFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFG 187

Query: 186 SNPPIPVKILSKALLVDDGIINTIKSEF 213
           SNPPIP  +L+KA       I  IK +F
Sbjct: 188 SNPPIPDDLLAKAFGAAAPEIQKIKGKF 215

The following BLAST results are available for this feature:

BLAST of Clc06G17720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880093.1	8.6e-100	85.85	germin-like protein subfamily T member 2 [Benincasa hispida]	[more]
KAA0057910.1	4.7e-98	84.91	germin-like protein subfamily T member 1 [Cucumis melo var. makuwa] >TYJ98598.1 ...	[more]
XP_008453674.2	4.7e-98	84.91	PREDICTED: germin-like protein subfamily T member 1 [Cucumis melo]	[more]
KGN63631.1	1.4e-97	83.49	hypothetical protein Csa_014050 [Cucumis sativus]	[more]
XP_038879323.1	5.2e-89	77.46	germin-like protein subfamily T member 2 [Benincasa hispida]	[more]

BLAST of Clc06G17720.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMC9	5.3e-60	52.58	Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P92995	2.0e-59	51.64	Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana OX=3702 GN=GLP1...	[more]
Q7F731	4.9e-58	54.90	Germin-like protein 1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=GER4 PE=2 SV...	[more]
Q10BU2	2.7e-56	51.66	Germin-like protein 3-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GER7 PE=2 SV...	[more]
Q6I544	2.3e-55	52.66	Germin-like protein 5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0277500...	[more]

BLAST of Clc06G17720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URX6	2.3e-98	84.91	Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G...	[more]
A0A1S3BWX7	2.3e-98	84.91	Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103494323 PE=3 SV=1	[more]
A0A0A0LUD9	6.6e-98	83.49	Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G007900 PE=3 SV=1	[more]
A0A6J1JCY5	6.2e-88	75.85	Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485659 PE=3 SV=1	[more]
A0A5D3BHJ0	4.0e-87	77.56	Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G...	[more]

BLAST of Clc06G17720.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18980.1	3.7e-61	52.58	RmlC-like cupins superfamily protein	[more]
AT1G18970.1	1.4e-60	51.64	germin-like protein 4	[more]
AT1G09560.1	1.8e-55	51.63	germin-like protein 5	[more]
AT1G02335.1	4.6e-51	47.14	germin-like protein subfamily 2 member 2 precursor	[more]
AT3G05930.1	5.6e-49	47.60	germin-like protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 169..184 score: 42.88 coord: 106..126 score: 56.04 coord: 136..156 score: 46.29
IPR006045	Cupin 1	SMART	SM00835	Cupin_1_3	coord: 58..206 e-value: 1.2E-25 score: 101.2
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 60..201 e-value: 3.2E-36 score: 124.2
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 20..214 e-value: 5.4E-78 score: 263.0
None	No IPR available	PANTHER	PTHR31238	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3	coord: 6..213
None	No IPR available	PANTHER	PTHR31238:SF14	GERMIN-LIKE PROTEIN SUBFAMILY T MEMBER 1-RELATED	coord: 6..213
None	No IPR available	CDD	cd02241	cupin_OxOx	coord: 21..212 e-value: 4.48323E-83 score: 243.272
IPR019780	Germin, manganese binding site	PROSITE	PS00725	GERMIN	coord: 101..114
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 21..212

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc06G17720	Clc06G17720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc06G17720.1-exon	Clc06G17720.1-exon-ClcChr06:28261598..28262310	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc06G17720.1-three_prime_utr	Clc06G17720.1-three_prime_utr-ClcChr06:28261598..28261645	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc06G17720.1-cds	Clc06G17720.1-cds-ClcChr06:28261646..28262290	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc06G17720.1-five_prime_utr	Clc06G17720.1-five_prime_utr-ClcChr06:28262291..28262310	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc06G17720.1	Clc06G17720.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0048046	apoplast
cellular_component	GO:0031213	RSF complex
molecular_function	GO:0030145	manganese ion binding