Clc05G24660.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc05G24660.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Rad60-SLD domain-containing protein
Location	ClcChr05: 32587231 .. 32589713 (-)
Sequence length	1024
RNA-Seq Expression	Clc05G24660.2
Synteny	Clc05G24660.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAATTTCTAGCGGCGTTTTGCTACGTAACGCTTCGACGGTGAACGGACAGTGAGTTTGAGTCTCCCGGCCGGATACGACGAATATTGATCGAAGAAGAACCCGAATAGTTTAGGTTTCGAGGTCTTTGACAATGGTGAGTCTCTTTCTCTCTTTAATTTCACGGGCACTGTACTCTTTTCTGTATCATTTCCACTCCTACTTTTCCCTCCTCTCTAATTTATCAATTCTTACTTTGAGCTTTTATTTTCAGGCCGATTCTACTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCGCTCCGTTGTTTGTCTCGATGGTAATAGTTTCCAATGATATTGGAATTTCACGAAAGTCGGAAATTTCTATATCATTGTGTTTGATGTATTTATAATTCTTGTTTGAGCAAGAAATTTGGAAATTGAGCTTCCTTGTGCTTTCAGTCTTCCAAACCGATGATAATTTTGTGCTTTGTTTTTCTTCTATTTGGATTAACAACATTAGACGAGGATTCAGACTCAGACAAATCTCCGGGACCTTTTTCAAAGCGAGTGAAGATTGTAAATCCGGCGGTATATTATTCCCTTCATGTGGTGAAATAGTAGACATTCTGTTTGCTTAAGTTTGATGTTTCGTTCGAACAGTGGGTAAAGCTAGTATTTTATGATCATTTCCTTGCAATCAATATTTAGGTTACGAGTTTGGTGGATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTGCCTCCTCCACCGAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTATTCCAACTTAGTGGTATGCATCTGTTGCTTGGTTAATCCATTAATATGAAATGGAACTCTTATTTGTTCTGCGCATGAGCTGCCATGGCATGTGTCTCATGCCATTTTACCTTTGTATATCATATGTAATCTGCACTGATAGGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCAGCGAAAAACTTGTTGCGAGAAGTTGAGGAATCTGCAAAAGTAGATGTTGGAAACACGCCCCAGGACTCCCTGGAGCCTGATTTGGATGACCAAACTCCAATTGCTTCTAAAGAAAGAGCAAAGATTGTTATTTTTGTACGAGACAGTGACAAGGAAGAGCTCAAACAGTTTCGCCTCTTTGTGGTATGTTCTTGTGCATGTCTGCATGTTTTTCACAACTCAGAATTCGCCTTCTTCGATTGCAATCATCCTGTTTTGTCAATATATCTCATGGTTTACAATCACTGTTTTTGATATGCGTGTGAGGTGTCTTTTATTTGCTCGGTACTCGTGCATTAGTAAGCATGTTTAGATATACGGAAATGAAAGAATGAATGAATGTGATGAAGTTGATTTGACTAGTAAGAGTGAGAATTGGAAATAAGTATAGTCTATGGTAAGCGAATCTTGAAAACAATGATTAATACAAAAGGGGGTTTTGCGGGAAACTGTAATTTTTCAATTGATTGTTAAAACCAGATTAAATTGAACTTTCTCATTTGAATTCCCAACTTTTCTGAGGTAGTCTCTTTATTGTCTAGAAAAAAAGTATGATTCAAATCTTGGTTATTTTCTAGTTGTCAATAGTGATTAGCCATACGTACTCTTTAATTTGATTTTCTTGTACTTCCCGTCCACATCATGATTGCCTTAACTTCGTTATGTGGTGATCATTAGATTGAAGTTGAACGAAGATGTTGGATGTTACTTTTGTTTCATTAGTGTTCTGTGTACAGTTTCTGCGATTATGGATGTGGTTGTTTAAGAACAATGGGTCTTTTCTAAGATATGTCCACATTTAGGCTATGGTGAAAGTACCATCGGTCTCCCATGGTGATGACTTGGTATGTTATTCGATTGAATTACTTTAGGAATAACTCCCTGATCATAATACAAAATGTAATGCACCCTGCCTTGTTGGACAGGTAGCTCTTTTTTCATCTCCATATTTTCTGTCTTCATATAAGCACTGTAGGCCACAGTATTCCATTTATTACTACAACTACTTATGATGTGACACTTTTAGAAGTGTTCCAAACATACTCTTATATGGTCTTGAATTTTAACTGTTGTATAGGATGACAAGTTTGAGCGACTTTTCAAAATGTATGCGGACAAGCTTAAAATCAACCCTAAGAGTTTGGTTTTCATCTTTGACGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATTGAAGTGAACATCAAGTCGAGTTGAGTTAGGTGTCTTGAGTGTATATTTTGTGAATTAGTTCACCAGTTTTGGGGATGGGGGACTTGGAAAATGCCAAATTCAATACTTTGTACCATAAGATGAACAAATCACTTATGGAAGGCTGTGAAGGTTCCTTTTGGCCGGTACATTTGTTTGGTAAGCACATTGA

mRNA sequence

AGAGAGAGAATTTCTAGCGGCGTTTTGCTACGTAACGCTTCGACGGTGAACGGACAGTGAGTTTGAGTCTCCCGGCCGGATACGACGAATATTGATCGAAGAAGAACCCGAATAGTTTAGGTTTCGAGGTCTTTGACAATGGCCGATTCTACTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCGCTCCGTTGTTTGTCTCGATGACGAGGATTCAGACTCAGACAAATCTCCGGGACCTTTTTCAAAGCGAGTGAAGATTGTAAATCCGGCGGTTACGAGTTTGGTGGATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTGCCTCCTCCACCGAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCAGCGAAAAACTTGTTGCGAGAAGTTGAGGAATCTGCAAAAGTAGATGTTGGAAACACGCCCCAGGACTCCCTGGAGCCTGATTTGGATGACCAAACTCCAATTGCTTCTAAAGAAAGAGCAAAGATTGTTATTTTTGTACGAGACAGTGACAAGGAAGAGCTCAAACAGTTTCGCCTCTTTGTGGCTATGGTGAAAGTACCATCGGTCTCCCATGGTGATGACTTGGATGACAAGTTTGAGCGACTTTTCAAAATGTATGCGGACAAGCTTAAAATCAACCCTAAGAGTTTGGTTTTCATCTTTGACGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATTGAAGTGAACATCAAGTCGAGTTGAGTTAGGTGTCTTGAGTGTATATTTTGTGAATTAGTTCACCAGTTTTGGGGATGGGGGACTTGGAAAATGCCAAATTCAATACTTTGTACCATAAGATGAACAAATCACTTATGGAAGGCTGTGAAGGTTCCTTTTGGCCGGTACATTTGTTTGGTAAGCACATTGA

Coding sequence (CDS)

ATGGCCGATTCTACTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCGCTCCGTTGTTTGTCTCGATGACGAGGATTCAGACTCAGACAAATCTCCGGGACCTTTTTCAAAGCGAGTGAAGATTGTAAATCCGGCGGTTACGAGTTTGGTGGATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTGCCTCCTCCACCGAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCAGCGAAAAACTTGTTGCGAGAAGTTGAGGAATCTGCAAAAGTAGATGTTGGAAACACGCCCCAGGACTCCCTGGAGCCTGATTTGGATGACCAAACTCCAATTGCTTCTAAAGAAAGAGCAAAGATTGTTATTTTTGTACGAGACAGTGACAAGGAAGAGCTCAAACAGTTTCGCCTCTTTGTGGCTATGGTGAAAGTACCATCGGTCTCCCATGGTGATGACTTGGATGACAAGTTTGAGCGACTTTTCAAAATGTATGCGGACAAGCTTAAAATCAACCCTAAGAGTTTGGTTTTCATCTTTGACGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATTGAAGTGAACATCAAGTCGAGTTGA

Protein sequence

MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKEKQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSHGDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS

Homology

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BLAST of Clc05G24660.2 vs. NCBI nr
Match: XP_038891511.1 (uncharacterized protein LOC120080907 [Benincasa hispida])

HSP 1 Score: 392.9 bits (1008), Expect = 2.0e-105
Identity = 208/239 (87.03%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MADS EEFEPLFDYSRVQPRSVVCLDDEDSD+DKSP PFSKRVKIVNPA TSLVD NPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPRSVVCLDDEDSDADKSPAPFSKRVKIVNPAATSLVDSNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIEDKEEDWLPPPPKV VDA+NMCGEDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AKVDVGN P DSLEPDLD QTPIASKERAKIVI VRDSDKEELKQFRLFV          
Sbjct: 121 AKVDVGNKP-DSLEPDLDVQTPIASKERAKIVISVRDSDKEELKQFRLFV---------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
               DDKFERLFKMYADK KI+PK+L+F+FDGDKVGPDDTPV LGMEDDDMIEVNIKSS
Sbjct: 181 ----DDKFERLFKMYADKHKIDPKNLIFVFDGDKVGPDDTPVSLGMEDDDMIEVNIKSS 224

[Close]

BLAST of Clc05G24660.2 vs. NCBI nr
Match: XP_004135076.1 (uncharacterized protein LOC101214853 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 5.1e-101
Identity = 200/239 (83.68%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MADS EEFEPLFDYSRVQP SVVCLDDEDSD+DKSP PF+KR KIVNPA TS V+GNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIEDKEEDWLPPPPKV VDA+N   EDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AKVDVGNT  D LEPDLD QTP+ASKERAKIVI VRDSDKEELKQ+RLFV          
Sbjct: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFV---------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
               DDKFERLFK+YADKLKI+PKSLVF+FDGDKVGPDDTP GLGMEDDDMIEVNIKSS
Sbjct: 181 ----DDKFERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Clc05G24660.2 vs. NCBI nr
Match: XP_023553495.1 (uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.9 bits (956), Expect = 2.1e-99
Identity = 196/239 (82.01%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MAD  EEFEPLFDYSRVQPRSV CLDDEDSD+  SP PFSKR +I+NPAVTSLVDGNPKE
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEI D+EEDWLPPPPKV VDAKNMCGEDSTLKELRLKK ELA VALSAKNLLREVEES
Sbjct: 61  KQVEIVDEEEDWLPPPPKVLVDAKNMCGEDSTLKELRLKKLELALVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AK+DVGNTPQD LEP LDDQ PIASKERAKIVI VRDS+KEELKQFRLF           
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSEKEELKQFRLF----------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
              +DDKFERLFKMYA+K KI+PKSLVFIFDGDKVGPDDTP+GLGMEDDDMI+VNI+ S
Sbjct: 181 ---MDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVGPDDTPIGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of Clc05G24660.2 vs. NCBI nr
Match: XP_022985708.1 (uncharacterized protein LOC111483658 [Cucurbita maxima])

HSP 1 Score: 372.1 bits (954), Expect = 3.6e-99
Identity = 195/239 (81.59%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MAD  EEFEPLF+YSRV PRSV CLD+EDSD+  SP PFSKR +I+NPAVTSLVDGNPKE
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED+EEDWLPPPPKVSVDAKNMCGEDSTLKELRL K ELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AK+DVGNTPQD LEP LDDQ PIASKERAKIVI VRDSDKEELKQFR+F           
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIF----------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
              +DDKFERLFKMYA+K KI+PKSLVFIFDGDKVGPDDTPVGLGMEDDDMI+VNI+ S
Sbjct: 181 ---MDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of Clc05G24660.2 vs. NCBI nr
Match: XP_022957159.1 (uncharacterized protein LOC111458628 [Cucurbita moschata])

HSP 1 Score: 369.8 bits (948), Expect = 1.8e-98
Identity = 196/239 (82.01%), Postives = 207/239 (86.61%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MAD  EEFEPLFDYSRVQPRSV CLDDEDSD+  SP PFSKR +I+NPAVTSLVDG  K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGIRKD 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED+EEDWLPPPPKVSVDAKNMCGEDSTLKELRL K ELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AK+DVGNTPQD LEP LDDQ PIASKERAKIVI VRDSDKEELKQFRLF           
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLF----------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
              +DDKFERLFKMYA+K KI+PKSLVFIFDGDKV PDDTP GLGMEDDDMI+VNI+SS
Sbjct: 181 ---MDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVSPDDTPTGLGMEDDDMIDVNIRSS 225

[Close]

BLAST of Clc05G24660.2 vs. ExPASy Swiss-Prot
Match: P55853 (Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.1e-05
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 190 RLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEV 235
           +L K YAD+  +   SL F+FDG ++  DDTP  L MEDDD+IEV
Sbjct: 39  KLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEV 83

[Close]

BLAST of Clc05G24660.2 vs. ExPASy TrEMBL
Match: A0A0A0KWH7 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.5e-101
Identity = 200/239 (83.68%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MADS EEFEPLFDYSRVQP SVVCLDDEDSD+DKSP PF+KR KIVNPA TS V+GNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIEDKEEDWLPPPPKV VDA+N   EDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AKVDVGNT  D LEPDLD QTP+ASKERAKIVI VRDSDKEELKQ+RLFV          
Sbjct: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFV---------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
               DDKFERLFK+YADKLKI+PKSLVF+FDGDKVGPDDTP GLGMEDDDMIEVNIKSS
Sbjct: 181 ----DDKFERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Clc05G24660.2 vs. ExPASy TrEMBL
Match: A0A6J1JEF8 (uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.8e-99
Identity = 195/239 (81.59%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MAD  EEFEPLF+YSRV PRSV CLD+EDSD+  SP PFSKR +I+NPAVTSLVDGNPKE
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED+EEDWLPPPPKVSVDAKNMCGEDSTLKELRL K ELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AK+DVGNTPQD LEP LDDQ PIASKERAKIVI VRDSDKEELKQFR+F           
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIF----------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
              +DDKFERLFKMYA+K KI+PKSLVFIFDGDKVGPDDTPVGLGMEDDDMI+VNI+ S
Sbjct: 181 ---MDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of Clc05G24660.2 vs. ExPASy TrEMBL
Match: A0A6J1H158 (uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC111458628 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.7e-99
Identity = 196/239 (82.01%), Postives = 207/239 (86.61%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MAD  EEFEPLFDYSRVQPRSV CLDDEDSD+  SP PFSKR +I+NPAVTSLVDG  K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGIRKD 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED+EEDWLPPPPKVSVDAKNMCGEDSTLKELRL K ELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AK+DVGNTPQD LEP LDDQ PIASKERAKIVI VRDSDKEELKQFRLF           
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLF----------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
              +DDKFERLFKMYA+K KI+PKSLVFIFDGDKV PDDTP GLGMEDDDMI+VNI+SS
Sbjct: 181 ---MDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVSPDDTPTGLGMEDDDMIDVNIRSS 225

[Close]

BLAST of Clc05G24660.2 vs. ExPASy TrEMBL
Match: A0A5A7SVU4 (Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001350 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.7e-98
Identity = 193/239 (80.75%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MADS EEFEPLFDYSRVQP SVVCLDDEDSD+DKSP PF+KR KI N A TS V+GNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED EEDWLPPPPKV VD  N  GEDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AKVDVGNT +DSLEPDLD QTP+ SKERAKIVI VRDSDKEELKQ+RLFV          
Sbjct: 121 AKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFV---------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
               DD FERLFK+YADKLKI+P+SLVF+FDGDK+GP+DTP GLGMEDDDMIEVNIKSS
Sbjct: 181 ----DDNFERLFKIYADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Clc05G24660.2 vs. ExPASy TrEMBL
Match: A0A1S3BF31 (uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489317 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.7e-98
Identity = 193/239 (80.75%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           MADS EEFEPLFDYSRVQP SVVCLDDEDSD+DKSP PF+KR KI N A TS V+GNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED EEDWLPPPPKV VD  N  GEDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASKERAKIVIFVRDSDKEELKQFRLFVAMVKVPSVSH 180
           AKVDVGNT +DSLEPDLD QTP+ SKERAKIVI VRDSDKEELKQ+RLFV          
Sbjct: 121 AKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFV---------- 180

Query: 181 GDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 240
               DD FERLFK+YADKLKI+P+SLVF+FDGDK+GP+DTP GLGMEDDDMIEVNIKSS
Sbjct: 181 ----DDNFERLFKIYADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Clc05G24660.2 vs. TAIR 10
Match: AT1G68185.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 9.1e-40
Identity = 104/242 (42.98%), Postives = 143/242 (59.09%), Query Frame = 0


Query: 1   MADSTEEFEPLFDYSRVQPRSVVCLDDEDSDSDKSPGPFSKRVKIVNPAVTSLVDGNPKE 60
           M    E+ EPLFDY RVQP + VC+DD+D D+  +P P  K+ K  +  V  L D     
Sbjct: 1   MGGEGEDLEPLFDYRRVQPANFVCIDDDDDDASVTPIP--KKAK-TSQTVEKLDD---DV 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           K +E+   ++DWL PPPKV  D      EDST+K LR KK EL S   +  ++++EVEES
Sbjct: 61  KVIEVTG-DDDWLLPPPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQEVEES 120

Query: 121 AKVDVGNTPQDSLEPDLDDQTPIASK---ERAKIVIFVRDSDKEELKQFRLFVAMVKVPS 180
           AK +V    ++S  P  +    + S+   +RAKIVI ++D D +  K  R+F        
Sbjct: 121 AKREV----EESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQ--KTLRVFA------- 180

Query: 181 VSHGDDLDDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIK 240
                  D+KFER+ K+Y DK K++P++LVFIFDGDK+ P  TP  LGMED DMIEV+ K
Sbjct: 181 -------DEKFERVIKLYTDKAKLDPQNLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTK 215

[Close]

BLAST of Clc05G24660.2 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 4.7e-04
Identity = 18/49 (36.73%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 185 DDKFERLFKMYADKLKINPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIE 234
           D +  ++   Y+DK+ +   +L F+FDG+++  + TP  LG+ED+D IE
Sbjct: 34  DVELRKMMHAYSDKVGVEMSTLRFLFDGNRIKLNQTPNELGLEDEDEIE 82

The following BLAST results are available for this feature:

BLAST of Clc05G24660.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891511.1	2.0e-105	87.03	uncharacterized protein LOC120080907 [Benincasa hispida]	[more]
XP_004135076.1	5.1e-101	83.68	uncharacterized protein LOC101214853 [Cucumis sativus]	[more]
XP_023553495.1	2.1e-99	82.01	uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo]	[more]
XP_022985708.1	3.6e-99	81.59	uncharacterized protein LOC111483658 [Cucurbita maxima]	[more]
XP_022957159.1	1.8e-98	82.01	uncharacterized protein LOC111458628 [Cucurbita moschata]	[more]

BLAST of Clc05G24660.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55853	4.1e-05	53.33	Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1...	[more]

BLAST of Clc05G24660.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWH7	2.5e-101	83.68	Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 P...	[more]
A0A6J1JEF8	1.8e-99	81.59	uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658...	[more]
A0A6J1H158	8.7e-99	82.01	uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A5A7SVU4	5.7e-98	80.75	Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BF31	5.7e-98	80.75	uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Clc05G24660.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68185.1	9.1e-40	42.98	Ubiquitin-like superfamily protein	[more]
AT5G55856.1	4.7e-04	36.73	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 185..236 e-value: 1.8E-10 score: 40.5
None	No IPR available	GENE3D	3.10.20.90		coord: 120..237 e-value: 4.7E-16 score: 61.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..75
None	No IPR available	PANTHER	PTHR47813	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 1..239
None	No IPR available	CDD	cd01763	Ubl_SUMO_like	coord: 150..234 e-value: 3.78646E-18 score: 74.1537
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 163..236

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc05G24660	Clc05G24660	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc05G24660.2-exon	Clc05G24660.2-exon-ClcChr05:32587231..32587564	exon
Clc05G24660.2-exon	Clc05G24660.2-exon-ClcChr05:32587798..32587839	exon
Clc05G24660.2-exon	Clc05G24660.2-exon-ClcChr05:32588499..32588718	exon
Clc05G24660.2-exon	Clc05G24660.2-exon-ClcChr05:32588864..32589006	exon
Clc05G24660.2-exon	Clc05G24660.2-exon-ClcChr05:32589127..32589194	exon
Clc05G24660.2-exon	Clc05G24660.2-exon-ClcChr05:32589380..32589455	exon
Clc05G24660.2-exon	Clc05G24660.2-exon-ClcChr05:32589573..32589713	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc05G24660.2-three_prime_utr	Clc05G24660.2-three_prime_utr-ClcChr05:32587231..32587396	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc05G24660.2-cds	Clc05G24660.2-cds-ClcChr05:32587397..32587564	CDS
Clc05G24660.2-cds	Clc05G24660.2-cds-ClcChr05:32587798..32587839	CDS
Clc05G24660.2-cds	Clc05G24660.2-cds-ClcChr05:32588499..32588718	CDS
Clc05G24660.2-cds	Clc05G24660.2-cds-ClcChr05:32588864..32589006	CDS
Clc05G24660.2-cds	Clc05G24660.2-cds-ClcChr05:32589127..32589194	CDS
Clc05G24660.2-cds	Clc05G24660.2-cds-ClcChr05:32589380..32589455	CDS
Clc05G24660.2-cds	Clc05G24660.2-cds-ClcChr05:32589573..32589575	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc05G24660.2-five_prime_utr	Clc05G24660.2-five_prime_utr-ClcChr05:32589576..32589713	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc05G24660.2	Clc05G24660.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding