Clc02G24380.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc02G24380.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Location	ClcChr02: 36226630 .. 36228846 (-)
Sequence length	747
RNA-Seq Expression	Clc02G24380.1
Synteny	Clc02G24380.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCCATCGTGTAAATTTGAAGAGATGAGTTCGATCGGATCGTTGGTTCCCAGAGAAGTAGTTGATCGATGGCAAGGATTTTTGTTCGTCGTCGTCAGCTTCTTTTTCCTTCTGTTATTTCTCTATGCCGCCATCATTTCCAAGCTTCTTCCACCTTCCAACAACGCCTTCTTATCTGCTATTCAGAATGACCGGTAACTTTTATCTTGATTTTAGAGAATTATCGTTTAATTGCTCAATTTGTTGTGTCTAGTCCATAATTCGATTTCTTCTTGTTATTCTGAAGAAAAAAAAATGTGTTGAAGTGTTAGTATTAGTTTCTGATTTGTTAATTGAATTCTGGGTTTGATCTTGATTTGGTGGGGCGGGGGGGATTGGCCGCCGACTGAAGATCAAAGCAAATCTGATTAGTTGATCAGTGTGAAGGAAGATGGAAAAAAAAGGGAGCCGAACAGAAACCAAATACTAAAACTTGATTTGTTTTTCCTCTCTAATAGAACTTTTTTTAAAGAAATGGGTTCGCAGAGTACAGGGAAATCATTGAAGTTTGAGAATGAAAGCCAGTGAATAAAATAGGCCCACTAAGGAGTGTTTTCAAATTCATATGATCTGGTTGGGTACCATCTCTTTTTTGGGTTTTTGGTTTTTTAAAATTTAGCCTATTTTCCCATTTTCTTATAAAAATCAAAAGTTGTTGGCTTTAATTTTTAAAAATCAAAAATAAAAAAAACCAAATGATTACTAAACGGGACCTTGATTTTTTGTTTTTAGTTTTTAAAAGTTATTCTTGCTTTCTCACAATTTCTTAATCATAGTTTTCACATTTACTAAGTAAATATTTGAATTTTTAGCTAATTTACAAAAACAAAAACCAAGTTTTTGAAAACTATATTTTTTTTTAGTTTTTAAAATTTGGCTTTATTTTGAAAACACTCACAAAACGTAGACAACAAAACATTGGAATCAATAGATCACAGTATTATTTATAAGTGTAATTTTCCAAAACAAAACAATTACCGATGGAGACTGCAGTACACTTTCTTTTAGATGTCGTGTGAATCATGTGGAAACTGGTTAATGAGATATCATTCATAACTCTACTGGTTTGATATTCAAACTACAATAATATATATGAATGACAAAATGATATCTGATCCATACTGGGGATGAGTATGGATGCATCTGAAAGCTTGCCTTTGAAGCAAACTTTGTTCAAAGGACATTTTTATGGAACTGATTTAGTGTTAGTGCCTTTGATCTCTTGAAAAGATCAACCCTAAAGAAACTAATATGGTAACTTGTTTCCTTGCCTAGTACTGTGTAAGACCCTAGTTATGGAAATAGTAGGACTATTAGTAAAATATTAGTATGCTTGTTAGAAGGAGCATTTGAGTAAATAGCTAGTAAGTTGGTTAGGGCTTAATAGAGGTAGAAGTTGAGAGGGAGGGGTGAAGAATTTTGTGGGATTTCCTTAGTTGGGAATTTGGGAGAGTCTAGCCCTCTCGAAGGACTAGTGGTTACCTTGTTACTTGTACTTATGATATTATAGCATCTTTCCTCATATTTTCATATCTCAGTGTTCTTGAGTTTGCTTAGTTTGCTAAGTGTTCTTGAATGTGTTCTTGTTAGATTAACAATAACATTTGTTTACAATGCCTTAATAGGTATTATTGTCTCCTGATGCCCTTGACATTGCCTATCCTTTACGTCGCGGTTTATTTCCATTGGCTGAGCATGAAACTATTCAAGCATGCTTGATCATGTAGTCGTAAGAAAGACGAAGGTTTTGAACAAGGTTGAGTGTCTAAATCTTTGATTGAATTACAATATGATGTGTTTGGAAGTTTCAATACCTAAGGCGATGAAGGATGTACGGTCGAATTACTGGAGACATACATGATGATCGTGCCGAGGGACTTCCACATCGGCTGAGTATCTTGGACCGATTTTTGTAAAGGGTTGTTACCATAAAATATGCACCCATTGTGGTTGAACGATGAGGATATTAGGTATTCAAATTAAACCGAAAGGCCAAACAGTGATTGAACACAAGCTCTATGAACTAATCTTGGCAAAAACAACTTGGCTTCTGGTTGTTTTTATATGGACAATCTCGAAATTTGATTTTGTGACGAAAAAGTATCTACTCCAGAGCTACCTATTTACTTCGGATGGTCTACTTTTTTTAATTGAATGAAAAATGTTAGTTGATTTATT

mRNA sequence

GATCCATCGTGTAAATTTGAAGAGATGAGTTCGATCGGATCGTTGGTTCCCAGAGAAGTAGTTGATCGATGGCAAGGATTTTTGTTCGTCGTCGTCAGCTTCTTTTTCCTTCTGTTATTTCTCTATGCCGCCATCATTTCCAAGCTTCTTCCACCTTCCAACAACGCCTTCTTATCTGCTATTCAGAATGACCGGTATTATTGTCTCCTGATGCCCTTGACATTGCCTATCCTTTACGTCGCGGTTTATTTCCATTGGCTGAGCATGAAACTATTCAAGCATGCTTGATCATGTAGTCGTAAGAAAGACGAAGGTTTTGAACAAGGTTGAGTGTCTAAATCTTTGATTGAATTACAATATGATGTGTTTGGAAGTTTCAATACCTAAGGCGATGAAGGATGTACGGTCGAATTACTGGAGACATACATGATGATCGTGCCGAGGGACTTCCACATCGGCTGAGTATCTTGGACCGATTTTTGTAAAGGGTTGTTACCATAAAATATGCACCCATTGTGGTTGAACGATGAGGATATTAGGTATTCAAATTAAACCGAAAGGCCAAACAGTGATTGAACACAAGCTCTATGAACTAATCTTGGCAAAAACAACTTGGCTTCTGGTTGTTTTTATATGGACAATCTCGAAATTTGATTTTGTGACGAAAAAGTATCTACTCCAGAGCTACCTATTTACTTCGGATGGTCTACTTTTTTTAATTGAATGAAAAATGTTAGTTGATTTATT

Coding sequence (CDS)

ATGAGTTCGATCGGATCGTTGGTTCCCAGAGAAGTAGTTGATCGATGGCAAGGATTTTTGTTCGTCGTCGTCAGCTTCTTTTTCCTTCTGTTATTTCTCTATGCCGCCATCATTTCCAAGCTTCTTCCACCTTCCAACAACGCCTTCTTATCTGCTATTCAGAATGACCGGTATTATTGTCTCCTGATGCCCTTGACATTGCCTATCCTTTACGTCGCGGTTTATTTCCATTGGCTGAGCATGAAACTATTCAAGCATGCTTGA

Protein sequence

MSSIGSLVPREVVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYYCLLMPLTLPILYVAVYFHWLSMKLFKHA

Homology

[Close]

BLAST of Clc02G24380.1 vs. NCBI nr
Match: ADN33919.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30
Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1  MSSIGSLVPR-EVVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYY 60
          MSSI SL+PR E V R QGF FVV+SF  LL+FLYAA+ISKLLPPSNNAFLSAIQND YY
Sbjct: 1  MSSIRSLIPREEAVGRRQGFFFVVLSFSLLLIFLYAAVISKLLPPSNNAFLSAIQNDWYY 60

Query: 61 CLLMPLTLPILYVAVYFHWLSMKLFKHA 88
          CLL+PLTLPILYVAVYFHWLSMKLFKHA
Sbjct: 61 CLLVPLTLPILYVAVYFHWLSMKLFKHA 88

[Close]

BLAST of Clc02G24380.1 vs. NCBI nr
Match: KAG6605922.1 (hypothetical protein SDJN03_03239, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035870.1 hypothetical protein SDJN02_02669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 72/88 (81.82%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MSSIGSLVPREVVD-RWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYY 60
          MSSI S V RE    RWQGF+F+VVSF FLLLFLYAAIISKLL PS+NAFLSAIQ D YY
Sbjct: 7  MSSIRSFVSREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQKDWYY 66

Query: 61 CLLMPLTLPILYVAVYFHWLSMKLFKHA 88
          CLL+PLTLPILY AVYFHWLSMKLFKHA
Sbjct: 67 CLLVPLTLPILYAAVYFHWLSMKLFKHA 94

[Close]

BLAST of Clc02G24380.1 vs. NCBI nr
Match: EYU17719.1 (hypothetical protein MIMGU_mgv1a017254mg [Erythranthe guttata])

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-19
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 7  LVPREVVDR----WQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYYCLL 66
          L  RE VD     + G+ F++   F  + FLYAA++SKLLPPS+N+ + AIQND YYC L
Sbjct: 2  LALREFVDSNGRIFWGWFFLIFGSFSFVFFLYAAVVSKLLPPSDNSVIQAIQNDWYYCFL 61

Query: 67 MPLTLPILYVAVYFHWLSMKLFKHA 88
          +PLTLPIL+VAVYFHWLSMKLFKHA
Sbjct: 62 VPLTLPILFVAVYFHWLSMKLFKHA 86

[Close]

BLAST of Clc02G24380.1 vs. NCBI nr
Match: XP_040987410.1 (uncharacterized protein LOC121235195 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 2   SSIGSLVPREVVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYYCL 61
           SS  S +     + + G+LFV + F F + FL+AA++SKLL  SNNA +SAIQND +YC 
Sbjct: 15  SSTSSQLTSSKDEFFWGYLFVAIGFVFFVNFLFAAVVSKLLSSSNNALISAIQNDWFYCF 74

Query: 62  LMPLTLPILYVAVYFHWLSMKLFKHA 88
           L+PLTLP+L VAVYFHWLSMKLFKHA
Sbjct: 75  LVPLTLPVLVVAVYFHWLSMKLFKHA 100

[Close]

BLAST of Clc02G24380.1 vs. NCBI nr
Match: KDO61195.1 (hypothetical protein CISIN_1g040265mg [Citrus sinensis])

HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 18 GFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYYCLLMPLTLPILYVAVYFH 77
          G+ F+V+   F L FL+AAIISKLLP SNN  LSAIQNDRYYC L+PLTLPI+ VAVYFH
Sbjct: 16 GWFFIVIGSAFFLGFLFAAIISKLLPLSNNPLLSAIQNDRYYCFLVPLTLPIIVVAVYFH 75

Query: 78 WLSMKLFKHA 88
          WLSMKLFKHA
Sbjct: 76 WLSMKLFKHA 85

[Close]

BLAST of Clc02G24380.1 vs. ExPASy TrEMBL
Match: E5GBS7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1  MSSIGSLVPR-EVVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYY 60
          MSSI SL+PR E V R QGF FVV+SF  LL+FLYAA+ISKLLPPSNNAFLSAIQND YY
Sbjct: 1  MSSIRSLIPREEAVGRRQGFFFVVLSFSLLLIFLYAAVISKLLPPSNNAFLSAIQNDWYY 60

Query: 61 CLLMPLTLPILYVAVYFHWLSMKLFKHA 88
          CLL+PLTLPILYVAVYFHWLSMKLFKHA
Sbjct: 61 CLLVPLTLPILYVAVYFHWLSMKLFKHA 88

[Close]

BLAST of Clc02G24380.1 vs. ExPASy TrEMBL
Match: A0A0A0KIB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434405 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 75/88 (85.23%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1  MSSIGSLVPR-EVVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYY 60
          MSSI SL+PR E V R QG LFVVVSF FLL+FLYAA ISKLLPPSNNAFLSAIQND +Y
Sbjct: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWHY 60

Query: 61 CLLMPLTLPILYVAVYFHWLSMKLFKHA 88
          CLL+PLTLPILYVAVYFHWLSMKLFKHA
Sbjct: 61 CLLVPLTLPILYVAVYFHWLSMKLFKHA 88

[Close]

BLAST of Clc02G24380.1 vs. ExPASy TrEMBL
Match: A0A022PQH2 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017254mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.3e-19
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 7  LVPREVVDR----WQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYYCLL 66
          L  RE VD     + G+ F++   F  + FLYAA++SKLLPPS+N+ + AIQND YYC L
Sbjct: 2  LALREFVDSNGRIFWGWFFLIFGSFSFVFFLYAAVVSKLLPPSDNSVIQAIQNDWYYCFL 61

Query: 67 MPLTLPILYVAVYFHWLSMKLFKHA 88
          +PLTLPIL+VAVYFHWLSMKLFKHA
Sbjct: 62 VPLTLPILFVAVYFHWLSMKLFKHA 86

[Close]

BLAST of Clc02G24380.1 vs. ExPASy TrEMBL
Match: A0A067F541 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040265mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.2e-19
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 18 GFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYYCLLMPLTLPILYVAVYFH 77
          G+ F+V+   F L FL+AAIISKLLP SNN  LSAIQNDRYYC L+PLTLPI+ VAVYFH
Sbjct: 16 GWFFIVIGSAFFLGFLFAAIISKLLPLSNNPLLSAIQNDRYYCFLVPLTLPIIVVAVYFH 75

Query: 78 WLSMKLFKHA 88
          WLSMKLFKHA
Sbjct: 76 WLSMKLFKHA 85

[Close]

BLAST of Clc02G24380.1 vs. ExPASy TrEMBL
Match: F6GWB2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00160 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.5e-19
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 18 GFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRYYCLLMPLTLPILYVAVYFH 77
          G++F++    F L FLYAA+ISKLLPPS N  +SAIQ DRYYC L+PLT+PIL VAVYFH
Sbjct: 19 GWIFLIFGSIFFLGFLYAAVISKLLPPSGNVIISAIQKDRYYCFLVPLTIPILIVAVYFH 78

Query: 78 WLSMKLFKHA 88
          WLSMKLFKHA
Sbjct: 79 WLSMKLFKHA 88

The following BLAST results are available for this feature:

BLAST of Clc02G24380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33919.1	6.5e-30	84.09	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAG6605922.1	2.1e-28	81.82	hypothetical protein SDJN03_03239, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EYU17719.1	6.7e-19	62.35	hypothetical protein MIMGU_mgv1a017254mg [Erythranthe guttata]	[more]
XP_040987410.1	8.8e-19	60.47	uncharacterized protein LOC121235195 [Juglans microcarpa x Juglans regia]	[more]
KDO61195.1	8.8e-19	75.71	hypothetical protein CISIN_1g040265mg [Citrus sinensis]	[more]

BLAST of Clc02G24380.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G24380.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBS7	3.1e-30	84.09	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0KIB0	3.1e-30	85.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434405 PE=4 SV=1	[more]
A0A022PQH2	3.3e-19	62.35	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017254mg PE...	[more]
A0A067F541	4.2e-19	75.71	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040265mg PE=4 SV=1	[more]
F6GWB2	9.5e-19	71.43	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00160 PE=4 SV=...	[more]

BLAST of Clc02G24380.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029164	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y	PFAM	PF15159	PIG-Y	coord: 18..86 e-value: 9.8E-18 score: 64.9
None	No IPR available	PANTHER	PTHR36485	OS01G0939000 PROTEIN	coord: 14..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc02G24380	Clc02G24380	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G24380.1-exon	Clc02G24380.1-exon-ClcChr02:36226630..36227182	exon
Clc02G24380.1-exon	Clc02G24380.1-exon-ClcChr02:36228653..36228846	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G24380.1-three_prime_utr	Clc02G24380.1-three_prime_utr-ClcChr02:36226630..36227088	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G24380.1-cds	Clc02G24380.1-cds-ClcChr02:36227089..36227182	CDS
Clc02G24380.1-cds	Clc02G24380.1-cds-ClcChr02:36228653..36228822	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G24380.1-five_prime_utr	Clc02G24380.1-five_prime_utr-ClcChr02:36228823..36228846	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc02G24380.1	Clc02G24380.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009509	chromoplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016166	phytoene dehydrogenase activity