Clc01G08550.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc01G08550.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Prefoldin subunit
Location	ClcChr01: 8777779 .. 8781711 (-)
Sequence length	636
RNA-Seq Expression	Clc01G08550.2
Synteny	Clc01G08550.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAGAAAAGGAAGCAGCGCCGGTGAAGGGGCGAGATCGTTGGAGTTGGAGTTGGAGAAGATGAGTGTCGAGCAACTCAAAGCTCTCAAGGAACAGACTGATATGGAAGTCAATCTCCTTCACGACAGCCTTAACAACATTCGCACAGCCACTTCTCGCCTTGACATTGCCTCCGCTGCCCTACACGATCTCTCGCTCCGTCCTCAAGGTTCGTTTCTCTATTTCCAGTTCTGGTTCGGATTCTAATCTGCATTTCCTTCATCGTTTTTATGTGGTTTTGTTTCATTTTGTTTTTATTATTTGGTGATTAGGTTTTTTTTTTCTTTTTTCTTTTTTTCTTTTAATGCTTGCTTTCTAGGAAAGAAGATGTTGGTGCCTCTTACTGCGTCGCTTTATGTTCCTGGGACGCTTGATGAGGCCGATAAGGTCTTGGTGGATGTAGGCACTGGATACTTCATTGAGGTCAGTTTGGTGGAATTTTGAACCTTATTGTTTGTTTGTCATTCTTCAATTGTTGATTCACTTTTTCTTGCATTTTTTCACAAAGAAAAGGTTGAAATTTTATTTTTGGTGTTTATTTGATTTCATTCACCAAACGAGACTGGTGTAGCTGGAAATTTAACTTTGTTTTCCAACATATAGCCGACGTATTTGTATTATAAGATGTTATCAATTACTTATTTTTCACAACTTAGTGTAGTGCCTTCTGTCGAGTGATGCATGGTGGTTTTATTTGGCTTTCTGTTGTTGATAACATTTGGTTTTTGAAAATGGATCTTGTTTTCAGCAAAAAGAAGTTTTTAAAAACTGACTTCAATTTTGAAAACATGGTTAGAAAGTAGATTACAAAACAAAAATCTCATAAGTGGTAGAAGTAGTGTTTATAAAGCTTAATTTTTCTGAAAACAAAAACTAAAACTAAAATCCAAATGGTTATCAAACGGGATCCAAATGACTTACTTGTAGATTTACCTTCTAAATAGGACACTTTATCTAGATCAATCTTTCCTACCTATCATAATTTATTCTGATTAATTAGCATTGATTGATGCGGATTGTTATCATCAATTAGGAACTTATTACTCAATGAGTATAATATCAGTTTATCATGTATTGATGTTGGTTATGTGTTCTCATGATTTGATGGTTACGTTGAATCAGAAAACAATGGCTGAAGGAAAAGATTACTGTGATCGAAAGATCAAATTGCTGAGGTCGAATTTTGACCAACTAATCGAGGTATTGTGACAACTTTGAAGTCGAATTTGGAACAAAAAGTTTTCAAGTGAGAATAATAGTGAAAGAAGTGTTGATATCTGAACCATGTATTATAGTTCCTTGATGTTGATTCTGCACCTTTATCTGCGAATGAAATATAGCTAAAAATGTTGGTAGTTGGTTCAATACAATGATAACAAATTTTTAAAACTAAAAAAATAAGCAGTTTCTTTAAAAATGTTTTAAACCATGAAAAACAAAATTTTAAAAAATAAATTGATTGAACAAGTATAATATTTTTTAAAACAGTAAAGGAAAGGTTAAATGATGTCTTAAATATTTGAGTTATCCTGTACAATTGTCTTTCTTTTATTTCTAATTTTTTTTATTAACTTCTTTTTTAATCTAATCTTCCTCTATAGCGATGCAAAAATTCCCTATGATATTCTATGTAGGAAGTTAGGTTCTACAGTCTTGACTTTGTGCTATATCTATGATTGGAGGTGAACATTTTTCTGTCGCTTAATTTTGAAGCTGTCCTCACTGGCACCTTAGGTACTAGAACTGACCGTCAATAGGGAAGCTAGGGCGAGGAAAACTAGCCACCTGAGTAAATTTATTTCTGAGTCCTTTGATTGTTGGTAGACTTTCTTTAGCAAAAGGCTAGTGCTAAGTTTGGTTGTATGAGGAGTGTGACTTGTGAGATGTGAGGCCTTCAAAGCTCCCAAATAGTACGTCATATCACCTCTATATAGCTCTTTGGAAGCGCTGCATAGGTGCAAAGCCCCCTTGGGACACAATGTGACGAGAGCCCTTCCCAGAAATGCATGATATATTTTAAAGATTCTCTTGAAACATCCTCATTAGTCATTTCCTTAGTTTCTCATGATATAGTATTCAAAATGTTATAACTTTCTATTTATAGAATTTTTATTTGAATTTGTTTATTGGCACCTTAAGTAGAAAAAACCCATGCTCAAGTCTTGAACTTGTTGTGCAGTAGTATTCTTCATACTTCACGGTCTCCTCTCCTATCAAAATCCCAAGAGTGGAGAGAATTTTTATTTAATTTACCCGGGAGTGTATGCTTATGTTGTTAGCAGATTCTTTATTAATGAGGAAAATGAGGAGTGGTTTCCTGTGCACTGTGTGAACAAAGGCCTATTATTTCCCGTGTACTATTAGCAAAGGCCTCCTAGACATTGAGGCAAGGTACTCAACTCATAGATTCCGAACCAGGTGCTTGTGTGAGTGGTCACTACCCATAGGTTTAGACCGTACTTCTAGGCTATTTGACATGTACCACGTACCGTCTTTACTTTGTAGAATAGTTCCCACAAGTTTGATAGACTCGTCAAGGTGAGTAGTTAGCCCAAGTGGGCTCAACATGGGATAAAATATGAGCTCGAGCTCTCATTTGCTAAGGAACTTAGAGAGCAAGGAGGATCCAGATTTTTAGCAACCACTCAGCTAAAGATTGTACAAATTCAAGTCTTCAAGTATCACTTGTAATCCTGAATCCCTTGGTTAGAAAGTAGTCACACTAACAAACTTGCTAACTTGGGGACATAATATTTCTCTCCAGCATGTCCATGAAGTTTTAAAAAATCCTAACATCTTAGAGATAGATAGAGAGTTACGAATTAATCGAACGAACCACACTCCTTTGGTTTGACAATGGGCTTTGAATTGTAAAGGACTGTTCCAGTAGATGACAGAATTCCATGGGAACTTAGGTGGTTAACGTGCACCATTGTCATCATGCGGTTATCAGGACATGTTGTAGGCTAAGGTGCACCTCAGCACATGTATGGCTGGCCATGTTTCGTCAATTTAGGCAATCCAAACTCCAAAGTGTAGCCGGGTCGATCATTTTGGTCAGAGTTCAGACTATTGGGCAAACTTGTCATAGCTAATTTCAACTAACAAGGAATGTCCCAATTATCTATTCACTGACATTTTGAGCGTTCTTCAGACAGCTTATAAACTCCAAAGCTAATTCTCTCGACCATTGTATATCCAATTACCCATTCACTAACTGACATTTTTTGTATACTTGAAATTCTGTTTTACCAACCAAACCACTTAACACCTTGACTGGCACAGTTCAATCCTTCGATCACTTCCATAGACTTCTACTGTTTGCATTTGCATTTGCTAGAGTTTAGGTGAGTGTGAATTACGAGCTTGAGTTCCCTAGTAGTAATGGTCCTAACCTAACCCTGTCCTTGTCACTTGAAGAGCCGACATTGGAGCCAAAAGTCGAAACTAGAGGGATGGTTTACCTTTGGGTGAGAACCAAGGTGGGGCAGCCCTTAGTTTCAGATAAAAAATATTAAATATACATTAATTTATCATTTATTTCGATTTTCAAGTGGTCAATAAGGATCATGGAAACAAGGGAATGAGAGGGAATGAGTTCAATCCATGGTGGCCACCTACTTAATATTTAATATCCTATGAGTTTTCTTGGCACCCAATTGTTGCAGAGTCAAGTAGGTTGTCCCATGAAATTGGTTAAGGTGCATGCAAGTTGGTCCGAGTACCTTACAAATATAAAAATTAATAATATTTATTTCCTTAGAAAAATGTGTATTTTGATTATTTTACCATTTCAACATGCAGATTGCTACTAAAAAGAAGAAAGTAGCAGATGAAGCTGGGGTGATCTTACAAGCAAAACTGAAGCAGATGGCTGCCACAATGTAG

mRNA sequence

ATGGCGTCGAGAAAAGGAAGCAGCGCCGGTGAAGGGGCGAGATCGTTGGAGTTGGAGTTGGAGAAGATGAGTGTCGAGCAACTCAAAGCTCTCAAGGAACAGACTGATATGGAAGTCAATCTCCTTCACGACAGCCTTAACAACATTCGCACAGCCACTTCTCGCCTTGACATTGCCTCCGCTGCCCTACACGATCTCTCGCTCCGTCCTCAAGGAAAGAAGATGTTGGTGCCTCTTACTGCGTCGCTTTATGTTCCTGGGACGCTTGATGAGGCCGATAAGGTCTTGGTGGATGTAGGCACTGGATACTTCATTGAGAAAACAATGGCTGAAGGAAAAGATTACTGTGATCGAAAGATCAAATTGCTGAGGTCGAATTTTGACCAACTAATCGAGGTGAGTGTGAATTACGAGCTTGAGTTCCCTAGTAGTAATGGTCCTAACCTAACCCTGTCCTTGTCACTTGAAGAGCCGACATTGGAGCCAAAAGTCGAAACTAGAGGGATGGTTTACCTTTGGAGTCAAGTAGGTTGTCCCATGAAATTGGTTAAGATTGCTACTAAAAAGAAGAAAGTAGCAGATGAAGCTGGGGTGATCTTACAAGCAAAACTGAAGCAGATGGCTGCCACAATGTAG

Coding sequence (CDS)

ATGGCGTCGAGAAAAGGAAGCAGCGCCGGTGAAGGGGCGAGATCGTTGGAGTTGGAGTTGGAGAAGATGAGTGTCGAGCAACTCAAAGCTCTCAAGGAACAGACTGATATGGAAGTCAATCTCCTTCACGACAGCCTTAACAACATTCGCACAGCCACTTCTCGCCTTGACATTGCCTCCGCTGCCCTACACGATCTCTCGCTCCGTCCTCAAGGAAAGAAGATGTTGGTGCCTCTTACTGCGTCGCTTTATGTTCCTGGGACGCTTGATGAGGCCGATAAGGTCTTGGTGGATGTAGGCACTGGATACTTCATTGAGAAAACAATGGCTGAAGGAAAAGATTACTGTGATCGAAAGATCAAATTGCTGAGGTCGAATTTTGACCAACTAATCGAGGTGAGTGTGAATTACGAGCTTGAGTTCCCTAGTAGTAATGGTCCTAACCTAACCCTGTCCTTGTCACTTGAAGAGCCGACATTGGAGCCAAAAGTCGAAACTAGAGGGATGGTTTACCTTTGGAGTCAAGTAGGTTGTCCCATGAAATTGGTTAAGATTGCTACTAAAAAGAAGAAAGTAGCAGATGAAGCTGGGGTGATCTTACAAGCAAAACTGAAGCAGATGGCTGCCACAATGTAG

Protein sequence

MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIASAALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKIKLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPMKLVKIATKKKKVADEAGVILQAKLKQMAATM

Homology

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BLAST of Clc01G08550.2 vs. NCBI nr
Match: XP_038875894.1 (probable prefoldin subunit 5 isoform X1 [Benincasa hispida])

HSP 1 Score: 265.0 bits (676), Expect = 5.5e-67
Identity = 154/211 (72.99%), Postives = 156/211 (73.93%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS
Sbjct: 1   MASRKGGSAGEGMRSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
            ALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI
Sbjct: 61  TALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLL+SNFDQLIE                                                
Sbjct: 121 KLLKSNFDQLIE------------------------------------------------ 159

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAATM 212
               IATKKKKVADEAGVILQAKLKQMAAT+
Sbjct: 181 ----IATKKKKVADEAGVILQAKLKQMAATI 159

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BLAST of Clc01G08550.2 vs. NCBI nr
Match: XP_023549859.1 (probable prefoldin subunit 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.8 bits (652), Expect = 3.3e-64
Identity = 151/210 (71.90%), Postives = 153/210 (72.86%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RS  LELEKMSVEQLKA KEQTDMEVNLLHDSLNNIRTATSRLDIA+
Sbjct: 1   MASRKGGSAGEGVRS--LELEKMSVEQLKAFKEQTDMEVNLLHDSLNNIRTATSRLDIAT 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
           AALHDLSLRPQGKKMLVPLTASLYVPGTLD+ADKVLVDVGTGYFIEKTMAEGKDYCDRKI
Sbjct: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLLRSNFDQLIE                                                
Sbjct: 121 KLLRSNFDQLIE------------------------------------------------ 156

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAAT 211
               IATKKKKVADEAGVILQAKLKQMAAT
Sbjct: 181 ----IATKKKKVADEAGVILQAKLKQMAAT 156

[Close]

BLAST of Clc01G08550.2 vs. NCBI nr
Match: XP_022938455.1 (probable prefoldin subunit 5 [Cucurbita moschata] >XP_022938456.1 probable prefoldin subunit 5 [Cucurbita moschata] >KAG6579078.1 putative prefoldin subunit 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-63
Identity = 150/210 (71.43%), Postives = 152/210 (72.38%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RS  LELEKMSVEQLKA KEQ DMEVNLLHDSLNNIRTATSRLDIA+
Sbjct: 1   MASRKGGSAGEGVRS--LELEKMSVEQLKAFKEQIDMEVNLLHDSLNNIRTATSRLDIAT 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
           AALHDLSLRPQGKKMLVPLTASLYVPGTLD+ADKVLVDVGTGYFIEKTMAEGKDYCDRKI
Sbjct: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLLRSNFDQLIE                                                
Sbjct: 121 KLLRSNFDQLIE------------------------------------------------ 156

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAAT 211
               IATKKKKVADEAGVILQAKLKQMAAT
Sbjct: 181 ----IATKKKKVADEAGVILQAKLKQMAAT 156

[Close]

BLAST of Clc01G08550.2 vs. NCBI nr
Match: XP_004149870.1 (probable prefoldin subunit 5 [Cucumis sativus] >KGN50940.1 hypothetical protein Csa_023076 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 2.2e-63
Identity = 148/211 (70.14%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 1   MASRK-GSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIA 60
           MASRK GSS GEG RSLELELEKMSVEQL+A KEQTDMEVNLLHDSLNNIRTATSRLDIA
Sbjct: 1   MASRKGGSSGGEGVRSLELELEKMSVEQLRAFKEQTDMEVNLLHDSLNNIRTATSRLDIA 60

Query: 61  SAALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRK 120
           SAALHDLSLRPQGK+MLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMA+GKDYC+RK
Sbjct: 61  SAALHDLSLRPQGKRMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMADGKDYCERK 120

Query: 121 IKLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCP 180
           IKLLRSNFDQLIE                                               
Sbjct: 121 IKLLRSNFDQLIE----------------------------------------------- 159

Query: 181 MKLVKIATKKKKVADEAGVILQAKLKQMAAT 211
                IATKKKKVADEAG+ILQAKL+QM AT
Sbjct: 181 -----IATKKKKVADEAGLILQAKLRQMGAT 159

[Close]

BLAST of Clc01G08550.2 vs. NCBI nr
Match: XP_022993145.1 (probable prefoldin subunit 5 [Cucurbita maxima] >XP_022993146.1 probable prefoldin subunit 5 [Cucurbita maxima])

HSP 1 Score: 249.2 bits (635), Expect = 3.1e-62
Identity = 148/210 (70.48%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RS  LELEKMSVEQLKA KEQTDMEVNLLHDSLNNIRTATSRLDIA+
Sbjct: 1   MASRKGGSAGEGVRS--LELEKMSVEQLKAFKEQTDMEVNLLHDSLNNIRTATSRLDIAT 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
           A LHDLSLRPQGKKMLVPLTASLYVPGTLD+ADKV VDVGTGYFIEKTMAEGKDYCD KI
Sbjct: 61  AVLHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVSVDVGTGYFIEKTMAEGKDYCDPKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLLRSNFDQLIE                                                
Sbjct: 121 KLLRSNFDQLIE------------------------------------------------ 156

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAAT 211
               IATKKKKVADEAGVILQAKLKQMAAT
Sbjct: 181 ----IATKKKKVADEAGVILQAKLKQMAAT 156

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BLAST of Clc01G08550.2 vs. ExPASy Swiss-Prot
Match: P57742 (Probable prefoldin subunit 5 OS=Arabidopsis thaliana OX=3702 GN=At5g23290 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-50
Identity = 114/191 (59.69%), Postives = 127/191 (66.49%), Query Frame = 0


Query: 19  ELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIASAALHDLSLRPQGKKMLVP 78
           E+EKM ++QLKALKEQ D+EVNLL DSLNNIRTAT RLD A+AAL+DLSLRPQGKKMLVP
Sbjct: 9   EMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQGKKMLVP 68

Query: 79  LTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKIKLLRSNFDQLIEVSVNYE 138
           LTASLYVPGTLDEADKVLVD+GTGYFIEKTM +GKDYC RKI LL+SNFDQL EV     
Sbjct: 69  LTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKINLLKSNFDQLFEV----- 128

Query: 139 LEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPMKLVKIATKKKKVADEAGV 198
                                                          A KKK VADEAG+
Sbjct: 129 -----------------------------------------------AAKKKSVADEAGM 147

Query: 199 ILQAKLKQMAA 210
           +LQAK+KQ+ A
Sbjct: 189 VLQAKVKQLTA 147

[Close]

BLAST of Clc01G08550.2 vs. ExPASy Swiss-Prot
Match: Q99471 (Prefoldin subunit 5 OS=Homo sapiens OX=9606 GN=PFDN5 PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-17
Identity = 43/113 (38.05%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 18  LELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIASAALHDLSLRPQGKKMLV 77
           + + ++++ QL+ LK Q D EV  L  S+  ++   ++   A   L+ L+   +GK++LV
Sbjct: 5   INITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLV 64

Query: 78  PLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKIKLLRSNFDQL 131
           PLT+S+YVPG L + + VL+DVGTGY++EKT  + KD+  RKI  L    +++
Sbjct: 65  PLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKI 117

[Close]

BLAST of Clc01G08550.2 vs. ExPASy Swiss-Prot
Match: Q9WU28 (Prefoldin subunit 5 OS=Mus musculus OX=10090 GN=Pfdn5 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-17
Identity = 43/113 (38.05%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 18  LELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIASAALHDLSLRPQGKKMLV 77
           + + ++++ QL+ LK Q D EV  L  S+  ++   ++   A   L+ L+   +GK++LV
Sbjct: 5   INITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLV 64

Query: 78  PLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKIKLLRSNFDQL 131
           PLT+S+YVPG L + + VL+DVGTGY++EKT  + KD+  RKI  L    +++
Sbjct: 65  PLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKI 117

[Close]

BLAST of Clc01G08550.2 vs. ExPASy Swiss-Prot
Match: Q5RAY0 (Prefoldin subunit 5 OS=Pongo abelii OX=9601 GN=PFDN5 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-17
Identity = 43/113 (38.05%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 18  LELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIASAALHDLSLRPQGKKMLV 77
           + + ++++ QL+ LK Q D EV  L  S+  ++   ++   A   L+ L+   +GK++LV
Sbjct: 5   INITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLV 64

Query: 78  PLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKIKLLRSNFDQL 131
           PLT+S+YVPG L + + VL+DVGTGY++EKT  + KD+  RKI  L    +++
Sbjct: 65  PLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKI 117

[Close]

BLAST of Clc01G08550.2 vs. ExPASy Swiss-Prot
Match: Q8HYI9 (Prefoldin subunit 5 OS=Bos taurus OX=9913 GN=PFDN5 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-17
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 18  LELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIASAALHDLSLRPQGKKMLV 77
           + + ++++ QL+ LK Q D EV  L  S+  ++   ++   A   L+ L    +GK++LV
Sbjct: 5   VNITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKELLV 64

Query: 78  PLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKIKLLRSNFDQL 131
           PLT+S+YVPG L + + VL+DVGTGY++EKT  + KD+  RKI  L    +++
Sbjct: 65  PLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKI 117

[Close]

BLAST of Clc01G08550.2 vs. ExPASy TrEMBL
Match: A0A6J1FD74 (probable prefoldin subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111444687 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 8.0e-64
Identity = 150/210 (71.43%), Postives = 152/210 (72.38%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RS  LELEKMSVEQLKA KEQ DMEVNLLHDSLNNIRTATSRLDIA+
Sbjct: 1   MASRKGGSAGEGVRS--LELEKMSVEQLKAFKEQIDMEVNLLHDSLNNIRTATSRLDIAT 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
           AALHDLSLRPQGKKMLVPLTASLYVPGTLD+ADKVLVDVGTGYFIEKTMAEGKDYCDRKI
Sbjct: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLLRSNFDQLIE                                                
Sbjct: 121 KLLRSNFDQLIE------------------------------------------------ 156

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAAT 211
               IATKKKKVADEAGVILQAKLKQMAAT
Sbjct: 181 ----IATKKKKVADEAGVILQAKLKQMAAT 156

[Close]

BLAST of Clc01G08550.2 vs. ExPASy TrEMBL
Match: A0A0A0KMS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G352600 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.1e-63
Identity = 148/211 (70.14%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 1   MASRK-GSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIA 60
           MASRK GSS GEG RSLELELEKMSVEQL+A KEQTDMEVNLLHDSLNNIRTATSRLDIA
Sbjct: 1   MASRKGGSSGGEGVRSLELELEKMSVEQLRAFKEQTDMEVNLLHDSLNNIRTATSRLDIA 60

Query: 61  SAALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRK 120
           SAALHDLSLRPQGK+MLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMA+GKDYC+RK
Sbjct: 61  SAALHDLSLRPQGKRMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMADGKDYCERK 120

Query: 121 IKLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCP 180
           IKLLRSNFDQLIE                                               
Sbjct: 121 IKLLRSNFDQLIE----------------------------------------------- 159

Query: 181 MKLVKIATKKKKVADEAGVILQAKLKQMAAT 211
                IATKKKKVADEAG+ILQAKL+QM AT
Sbjct: 181 -----IATKKKKVADEAGLILQAKLRQMGAT 159

[Close]

BLAST of Clc01G08550.2 vs. ExPASy TrEMBL
Match: A0A6J1JVI6 (probable prefoldin subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111489249 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.5e-62
Identity = 148/210 (70.48%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RS  LELEKMSVEQLKA KEQTDMEVNLLHDSLNNIRTATSRLDIA+
Sbjct: 1   MASRKGGSAGEGVRS--LELEKMSVEQLKAFKEQTDMEVNLLHDSLNNIRTATSRLDIAT 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
           A LHDLSLRPQGKKMLVPLTASLYVPGTLD+ADKV VDVGTGYFIEKTMAEGKDYCD KI
Sbjct: 61  AVLHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVSVDVGTGYFIEKTMAEGKDYCDPKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLLRSNFDQLIE                                                
Sbjct: 121 KLLRSNFDQLIE------------------------------------------------ 156

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAAT 211
               IATKKKKVADEAGVILQAKLKQMAAT
Sbjct: 181 ----IATKKKKVADEAGVILQAKLKQMAAT 156

[Close]

BLAST of Clc01G08550.2 vs. ExPASy TrEMBL
Match: A0A6J1JP08 (probable prefoldin subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111487047 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-62
Identity = 147/210 (70.00%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RS  LELEKMSVEQLKA+KEQTDMEVNLLHDSLNNIRTATSRLD AS
Sbjct: 1   MASRKGGSAGEGVRS--LELEKMSVEQLKAIKEQTDMEVNLLHDSLNNIRTATSRLDNAS 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
           AALHDLSLRPQGKKMLVPLTASLYVPGTLD+ADKVLVDVGTGYFIEKTMAEGKDYCDRKI
Sbjct: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLL+SNFDQLIEV                                               
Sbjct: 121 KLLKSNFDQLIEV----------------------------------------------- 156

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAAT 211
                A KKK +ADEAGVILQAKLKQMAAT
Sbjct: 181 -----AAKKKNLADEAGVILQAKLKQMAAT 156

[Close]

BLAST of Clc01G08550.2 vs. ExPASy TrEMBL
Match: A0A6J1H3F5 (probable prefoldin subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111459761 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-62
Identity = 147/210 (70.00%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MASRKGSSAGEGARSLELELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIAS 60
           MASRKG SAGEG RS  LELEKMSVEQLKA+KEQTDMEVNLLHDSLNNIRTATSRLD AS
Sbjct: 1   MASRKGGSAGEGVRS--LELEKMSVEQLKAIKEQTDMEVNLLHDSLNNIRTATSRLDNAS 60

Query: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120
           AALHDLSLRPQGKKMLVPLTASLYVPGTLD+ADKVLVDVGTGYFIEKTMAEGKDYCDRKI
Sbjct: 61  AALHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVLVDVGTGYFIEKTMAEGKDYCDRKI 120

Query: 121 KLLRSNFDQLIEVSVNYELEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPM 180
           KLL+SNFDQLIEV                                               
Sbjct: 121 KLLKSNFDQLIEV----------------------------------------------- 156

Query: 181 KLVKIATKKKKVADEAGVILQAKLKQMAAT 211
                A KKK +ADEAGVILQAKLKQMAAT
Sbjct: 181 -----AAKKKNLADEAGVILQAKLKQMAAT 156

[Close]

BLAST of Clc01G08550.2 vs. TAIR 10
Match: AT5G23290.1 (prefoldin 5 )

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-51
Identity = 114/191 (59.69%), Postives = 127/191 (66.49%), Query Frame = 0


Query: 19  ELEKMSVEQLKALKEQTDMEVNLLHDSLNNIRTATSRLDIASAALHDLSLRPQGKKMLVP 78
           E+EKM ++QLKALKEQ D+EVNLL DSLNNIRTAT RLD A+AAL+DLSLRPQGKKMLVP
Sbjct: 9   EMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQGKKMLVP 68

Query: 79  LTASLYVPGTLDEADKVLVDVGTGYFIEKTMAEGKDYCDRKIKLLRSNFDQLIEVSVNYE 138
           LTASLYVPGTLDEADKVLVD+GTGYFIEKTM +GKDYC RKI LL+SNFDQL EV     
Sbjct: 69  LTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKINLLKSNFDQLFEV----- 128

Query: 139 LEFPSSNGPNLTLSLSLEEPTLEPKVETRGMVYLWSQVGCPMKLVKIATKKKKVADEAGV 198
                                                          A KKK VADEAG+
Sbjct: 129 -----------------------------------------------AAKKKSVADEAGM 147

Query: 199 ILQAKLKQMAA 210
           +LQAK+KQ+ A
Sbjct: 189 VLQAKVKQLTA 147

The following BLAST results are available for this feature:

BLAST of Clc01G08550.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875894.1	5.5e-67	72.99	probable prefoldin subunit 5 isoform X1 [Benincasa hispida]	[more]
XP_023549859.1	3.3e-64	71.90	probable prefoldin subunit 5 [Cucurbita pepo subsp. pepo]	[more]
XP_022938455.1	1.7e-63	71.43	probable prefoldin subunit 5 [Cucurbita moschata] >XP_022938456.1 probable prefo...	[more]
XP_004149870.1	2.2e-63	70.14	probable prefoldin subunit 5 [Cucumis sativus] >KGN50940.1 hypothetical protein ...	[more]
XP_022993145.1	3.1e-62	70.48	probable prefoldin subunit 5 [Cucurbita maxima] >XP_022993146.1 probable prefold...	[more]

BLAST of Clc01G08550.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P57742	1.7e-50	59.69	Probable prefoldin subunit 5 OS=Arabidopsis thaliana OX=3702 GN=At5g23290 PE=2 S...	[more]
Q99471	3.2e-17	38.05	Prefoldin subunit 5 OS=Homo sapiens OX=9606 GN=PFDN5 PE=1 SV=2	[more]
Q9WU28	3.2e-17	38.05	Prefoldin subunit 5 OS=Mus musculus OX=10090 GN=Pfdn5 PE=1 SV=1	[more]
Q5RAY0	3.2e-17	38.05	Prefoldin subunit 5 OS=Pongo abelii OX=9601 GN=PFDN5 PE=2 SV=1	[more]
Q8HYI9	4.2e-17	38.05	Prefoldin subunit 5 OS=Bos taurus OX=9913 GN=PFDN5 PE=2 SV=1	[more]

BLAST of Clc01G08550.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FD74	8.0e-64	71.43	probable prefoldin subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111444687 PE=4 ...	[more]
A0A0A0KMS5	1.1e-63	70.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G352600 PE=4 SV=1	[more]
A0A6J1JVI6	1.5e-62	70.48	probable prefoldin subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111489249 PE=4 SV...	[more]
A0A6J1JP08	2.0e-62	70.00	probable prefoldin subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111487047 PE=4 SV...	[more]
A0A6J1H3F5	2.0e-62	70.00	probable prefoldin subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111459761 PE=4 ...	[more]

BLAST of Clc01G08550.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23290.1	1.2e-51	59.69	prefoldin 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004127	Prefoldin alpha-like	PFAM	PF02996	Prefoldin	coord: 38..130 e-value: 1.6E-24 score: 86.1
IPR004127	Prefoldin alpha-like	TIGRFAM	TIGR00293	TIGR00293	coord: 25..130 e-value: 1.1E-31 score: 107.6
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 16..140 e-value: 4.2E-28 score: 99.9
None	No IPR available	PANTHER	PTHR12674:SF8	BNAA09G05390D PROTEIN	coord: 14..134
None	No IPR available	CDD	cd00584	Prefoldin_alpha	coord: 25..130 e-value: 1.406E-26 score: 96.9151
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 24..132
IPR011599	Prefoldin alpha subunit, archaea-type	PANTHER	PTHR12674	PREFOLDIN SUBUNIT 5	coord: 14..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc01G08550	Clc01G08550	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G08550.2-exon	Clc01G08550.2-exon-ClcChr01:8777779..8777862	exon
Clc01G08550.2-exon	Clc01G08550.2-exon-ClcChr01:8777966..8777998	exon
Clc01G08550.2-exon	Clc01G08550.2-exon-ClcChr01:8778197..8778319	exon
Clc01G08550.2-exon	Clc01G08550.2-exon-ClcChr01:8780467..8780544	exon
Clc01G08550.2-exon	Clc01G08550.2-exon-ClcChr01:8781244..8781347	exon
Clc01G08550.2-exon	Clc01G08550.2-exon-ClcChr01:8781498..8781711	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G08550.2-cds	Clc01G08550.2-cds-ClcChr01:8777779..8777862	CDS
Clc01G08550.2-cds	Clc01G08550.2-cds-ClcChr01:8777966..8777998	CDS
Clc01G08550.2-cds	Clc01G08550.2-cds-ClcChr01:8778197..8778319	CDS
Clc01G08550.2-cds	Clc01G08550.2-cds-ClcChr01:8780467..8780544	CDS
Clc01G08550.2-cds	Clc01G08550.2-cds-ClcChr01:8781244..8781347	CDS
Clc01G08550.2-cds	Clc01G08550.2-cds-ClcChr01:8781498..8781711	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc01G08550.2	Clc01G08550.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016272	prefoldin complex
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051082	unfolded protein binding