Cla97C11G221310.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C11G221310.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr11: 27348981 .. 27349400 (-)
Sequence length	315
RNA-Seq Expression	Cla97C11G221310.1
Synteny	Cla97C11G221310.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGTAGAAGCGGAATCCAAAGACGAAGCAATGAGATCCAAAACCGCCGTTCGTTGTGCAAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCACCTCAAAGCCACTGTCGATCAACAAGCCAAGGTTCTCAATTACAATTTACGATCACTATCTGCCCTAGCTTGTGGATAGCGTTCTGGTTTATATGATTCGCGATTTTGAAAAATTAAAACGTCAATTACCTTTCAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGTTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGTGGTTTCATGGAATTTGTTCTTCAGCTCCTGATGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

mRNA sequence

ATGGCGAAAGTAGAAGCGGAATCCAAAGACGAAGCAATGAGATCCAAAACCGCCGTTCGTTGTGCAAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCACCTCAAAGCCACTGTCGATCAACAAGCCAAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGTTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGTGGTTTCATGGAATTTGTTCTTCAGCTCCTGATGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

Coding sequence (CDS)

ATGGCGAAAGTAGAAGCGGAATCCAAAGACGAAGCAATGAGATCCAAAACCGCCGTTCGTTGTGCAAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCACCTCAAAGCCACTGTCGATCAACAAGCCAAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGTTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGTGGTTTCATGGAATTTGTTCTTCAGCTCCTGATGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

Protein sequence

MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDLKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV

Homology

[Close]

BLAST of Cla97C11G221310.1 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.7e-32
Identity = 87/105 (82.86%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MAKVEAESKDEAMR-SKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGD 60
           M  VEAESKDEAMR SKTA+RCAKAAFLLSSLKSSQNR L+AT  +QAKE++MLRK VGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV 105
           LKI+L RERLRNKRIKLCG MEFVLQLL+VISLSS  LFVAFKFV
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

[Close]

BLAST of Cla97C11G221310.1 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-31
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDL 60
           M  VEAES+DEAMRSKTA RCAKAAFL+SS KS QNR+L+A+VD+QAKEKE LRK VGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61  KIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV 105
           KIEL  ER RNKRIKLCG MEFVLQLL+VISLSSFFLF+AFK +
Sbjct: 61  KIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]

BLAST of Cla97C11G221310.1 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 7.0e-31
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDL 60
           M  VEAES+DEAMRSKTA RCAKAAFL+SS KS QNR+L+A+VD++AKEKE LRK VGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60

Query: 61  KIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV 105
           KIEL  ER RN+RIKLCG MEFVLQLL+VISLSSFFLF+AFK +
Sbjct: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]

BLAST of Cla97C11G221310.1 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 9.1e-31
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDL 60
           M KVEAES+DEAMRS+TA RCAKAAF+LSSLKSSQN +L+ATV +  KEKE LRK +GDL
Sbjct: 1   MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61  KIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFK 103
           K+EL RERLRNKRIKLCG MEFVLQ+L+VI+LSSFF F+AFK
Sbjct: 61  KVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFK 102

[Close]

BLAST of Cla97C11G221310.1 vs. NCBI nr
Match: XP_011652624.1 (uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical protein Csa_001987 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKVEAESKDEAMR-SKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGD 60
           M  VEAE+K+EAMR SKTA+RCAKAAFLLSSLKSSQNR L+ATV +QAKEK+ML K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAF 102
           LKI+L RER+RNKRIKLCG MEFVLQLL+V+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of Cla97C11G221310.1 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 87/105 (82.86%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MAKVEAESKDEAMR-SKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGD 60
           M  VEAESKDEAMR SKTA+RCAKAAFLLSSLKSSQNR L+AT  +QAKE++MLRK VGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV 105
           LKI+L RERLRNKRIKLCG MEFVLQLL+VISLSS  LFVAFKFV
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

[Close]

BLAST of Cla97C11G221310.1 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.8e-32
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDL 60
           M  VEAES+DEAMRSKTA RCAKAAFL+SS KS QNR+L+A+VD+QAKEKE LRK VGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61  KIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV 105
           KIEL  ER RNKRIKLCG MEFVLQLL+VISLSSFFLF+AFK +
Sbjct: 61  KIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]

BLAST of Cla97C11G221310.1 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.4e-31
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDL 60
           M KVEAES+DEAMRS+TA RCAKAAF+LSSLKSSQN +L+ATV +  KEKE LRK +GDL
Sbjct: 1   MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61  KIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFK 103
           K+EL RERLRNKRIKLCG MEFVLQ+L+VI+LSSFF F+AFK
Sbjct: 61  KVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFK 102

[Close]

BLAST of Cla97C11G221310.1 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.3e-30
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKVEAESKDEAMR-SKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGD 60
           M  VEAE+K+EAMR SKTA+RCAKAAFLLSSLKSSQNR L+ATV +QAKEK+ML K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAF 102
           LKI+L RER+RNKRIKLCG MEFVLQLL+V+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of Cla97C11G221310.1 vs. ExPASy TrEMBL
Match: A0A6N2LGP1 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS226933 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 58/97 (59.79%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 7   ESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKA----VGDLKI 66
           ESKDE ++++ A+RCAKAA LLS LKS  NRHL  ++D Q +EKEML K     +GDLK+
Sbjct: 8   ESKDERLKAQVAIRCAKAAILLSKLKSFPNRHLTTSIDDQGEEKEMLIKTMVREIGDLKM 67

Query: 67  ELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFV 100
           ELVRERL+NKRIKLCG ME +LQ++ V+S+S+F L +
Sbjct: 68  ELVRERLKNKRIKLCGLMEVILQVVTVLSISTFLLVI 104

[Close]

BLAST of Cla97C11G221310.1 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 8  SKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQ--QAKEKEMLRKAVGDLKIELV 67
          SKDE  R  TA+RCA+A  LL SL SS+      T+D   + +EK   R+ + DL+ +L 
Sbjct: 3  SKDEFSRDLTAIRCARATMLLYSLASSR------TIDSAGEKQEKGETRREIEDLRRKLT 62

Query: 68 RERLRNKRIKLCGFMEFVLQLLMVISLSSFFL 98
            +++  RIKLCG ME +L + +V+ LS+FFL
Sbjct: 63 MVKIKMNRIKLCGLMELLLLVFLVLLLSTFFL 88

The following BLAST results are available for this feature:

BLAST of Cla97C11G221310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038606.1	3.7e-32	82.86	putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31...	[more]
XP_022940284.1	1.4e-31	79.81	uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar...	[more]
KAG7031715.1	7.0e-31	77.88	hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022138206.1	9.1e-31	77.45	uncharacterized protein LOC111009432 [Momordica charantia]	[more]
XP_011652624.1	1.7e-29	79.41	uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical ...	[more]

BLAST of Cla97C11G221310.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G221310.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E7E0	1.8e-32	82.86	Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1FJM5	6.8e-32	79.81	uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A6J1C920	4.4e-31	77.45	uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0LJY1	8.3e-30	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1	[more]
A0A6N2LGP1	1.7e-19	59.79	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS226933 PE=4 SV=...	[more]

BLAST of Cla97C11G221310.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78172.1	2.1e-09	43.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C11G221310	Cla97C11G221310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G221310.1-exon	Cla97C11G221310.1-exon-Cla97Chr11:27348981..27349151	exon
Cla97C11G221310.1-exon	Cla97C11G221310.1-exon-Cla97Chr11:27349257..27349400	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G221310.1-cds	Cla97C11G221310.1-cds-Cla97Chr11:27348981..27349151	CDS
Cla97C11G221310.1-cds	Cla97C11G221310.1-cds-Cla97Chr11:27349257..27349400	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C11G221310.1	Cla97C11G221310.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane