Cla97C11G209090.2 (mRNA) Watermelon (97103) v2.5

Overview
NameCla97C11G209090.2
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr11: 2672847 .. 2673330 (-)
Sequence length300
RNA-Seq ExpressionCla97C11G209090.2
SyntenyCla97C11G209090.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCCGTCGAATGAAGTTCATCAACGGTTCAATATCAAAGTAAAATTAGAAGAAAAAAAAAAGTTTAAGAGAAATTAAACTCGCTTTTGCTTGCCTTCAATTTGTCTCTTCCCTGCCGATCAGGAGAAATCTACTTCAAGCGGACGAATCACGGCGCTGCGTTTTAACGGCCGGTGAGAAATTAAACTGTATTCCTAAACAACATTCCGATCCATTCCAATTCGTCCAGAATCGGAGATTAGTTTCGATCGGAGGCTCTCGCTGACCAAACAGGACGTTGATCGTCGTGTTCGGAGGGAAAAAACAACAATCAACGGTGGAATTAGGCGATTTAATCAGGAATATCGTGATCGTGCCAACAAAGAAGCATGGAAACGCAACGGCCAAGGATATAGAATCTGGTTTTCTGTTGCTTGATCATCCGCAAGCATCGCTTTCGAAAAGTGGTTTTCCGGCGGTTTCTGAGGCGGATTTGCCCTGA

mRNA sequence

ATGTATCCGTCGAATGAAGTTCATCAACGGTTCAATATCAAAGAGAAATCTACTTCAAGCGGACGAATCACGGCGCTGCGTTTTAACGGCCGGACGTTGATCGTCGTGTTCGGAGGGAAAAAACAACAATCAACGGTGGAATTAGGCGATTTAATCAGGAATATCGTGATCGTGCCAACAAAGAAGCATGGAAACGCAACGGCCAAGGATATAGAATCTGGTTTTCTGTTGCTTGATCATCCGCAAGCATCGCTTTCGAAAAGTGGTTTTCCGGCGGTTTCTGAGGCGGATTTGCCCTGA

Coding sequence (CDS)

ATGTATCCGTCGAATGAAGTTCATCAACGGTTCAATATCAAAGAGAAATCTACTTCAAGCGGACGAATCACGGCGCTGCGTTTTAACGGCCGGACGTTGATCGTCGTGTTCGGAGGGAAAAAACAACAATCAACGGTGGAATTAGGCGATTTAATCAGGAATATCGTGATCGTGCCAACAAAGAAGCATGGAAACGCAACGGCCAAGGATATAGAATCTGGTTTTCTGTTGCTTGATCATCCGCAAGCATCGCTTTCGAAAAGTGGTTTTCCGGCGGTTTCTGAGGCGGATTTGCCCTGA

Protein sequence

MYPSNEVHQRFNIKEKSTSSGRITALRFNGRTLIVVFGGKKQQSTVELGDLIRNIVIVPTKKHGNATAKDIESGFLLLDHPQASLSKSGFPAVSEADLP
Homology
[Close]
BLAST of Cla97C11G209090.2 vs. NCBI nr
Match: KAA0061572.1 (hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17
Identity = 46/53 (86.79%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 46 VELGDLIRNIVIVPTKKHGNATAKDIESGFLLLDHPQASLSKSGFPAVSEADL 99
          V+LGDLIRNI+IVPTKKHG+ATA+DIESGFLLLDHP+ASLSK+GFPAVSEA+L
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAEL 54

[Close]
BLAST of Cla97C11G209090.2 vs. NCBI nr
Match: TYK10702.1 (hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17
Identity = 46/53 (86.79%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 46 VELGDLIRNIVIVPTKKHGNATAKDIESGFLLLDHPQASLSKSGFPAVSEADL 99
          V+LGDLIRNI+IVPTKKHG+ATA+DIESGFLLLDHP+ASLSK+GFPAVSEA+L
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAEL 54

[Close]
BLAST of Cla97C11G209090.2 vs. NCBI nr
Match: KAE8651522.1 (hypothetical protein Csa_023920, partial [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-15
Identity = 42/51 (82.35%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 47 ELGDLIRNIVIVPTKKHGNATAKDIESGFLLLDHPQASLSKSGFPAVSEAD 98
          ELGDLI NI+IVPTKKHG+ATA+DI+SGFLLLDHP+ASLSK+GFPAVS+A+
Sbjct: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 51

[Close]
BLAST of Cla97C11G209090.2 vs. ExPASy TrEMBL
Match: A0A5A7V070 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001340 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 46/53 (86.79%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 46 VELGDLIRNIVIVPTKKHGNATAKDIESGFLLLDHPQASLSKSGFPAVSEADL 99
          V+LGDLIRNI+IVPTKKHG+ATA+DIESGFLLLDHP+ASLSK+GFPAVSEA+L
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAEL 54

[Close]
BLAST of Cla97C11G209090.2 vs. ExPASy TrEMBL
Match: A0A5D3CHF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00110 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 46/53 (86.79%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 46 VELGDLIRNIVIVPTKKHGNATAKDIESGFLLLDHPQASLSKSGFPAVSEADL 99
          V+LGDLIRNI+IVPTKKHG+ATA+DIESGFLLLDHP+ASLSK+GFPAVSEA+L
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAEL 54

The following BLAST results are available for this feature:
BLAST of Cla97C11G209090.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061572.15.5e-1786.79hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa][more]
TYK10702.15.5e-1786.79hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa][more]
KAE8651522.16.7e-1582.35hypothetical protein Csa_023920, partial [Cucumis sativus][more]
BLAST of Cla97C11G209090.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G209090.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V0702.7e-1786.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHF02.7e-1786.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Cla97C11G209090.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C11G209090Cla97C11G209090gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C11G209090.2-exonCla97C11G209090.2-exon-Cla97Chr11:2672847..2673054exon
Cla97C11G209090.2-exonCla97C11G209090.2-exon-Cla97Chr11:2673155..2673204exon
Cla97C11G209090.2-exonCla97C11G209090.2-exon-Cla97Chr11:2673289..2673330exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C11G209090.2-cdsCla97C11G209090.2-cds-Cla97Chr11:2672847..2673054CDS
Cla97C11G209090.2-cdsCla97C11G209090.2-cds-Cla97Chr11:2673155..2673204CDS
Cla97C11G209090.2-cdsCla97C11G209090.2-cds-Cla97Chr11:2673289..2673330CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C11G209090.2Cla97C11G209090.2-proteinpolypeptide