Cla97C01G011280.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C01G011280.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Protein GL2-INTERACTING REPRESSOR 2
Location	Cla97Chr01: 18579939 .. 18580202 (-)
Sequence length	264
RNA-Seq Expression	Cla97C01G011280.1
Synteny	Cla97C01G011280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

mRNA sequence

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

Coding sequence (CDS)

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

Protein sequence

MGQSFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNLVNQASRKNVVDMPPDVAK

Homology

[Close]

BLAST of Cla97C01G011280.1 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-19
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 22 SNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNLVNQASRKNVVDM 81
          S+S  EDATT  MVLLGCT+CLMYVMSSK DLKCPKCN TTLLDV NL NQAS+KN+VDM
Sbjct: 18 SSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKNLVDM 77

Query: 82 PPDVAK 88
            DVAK
Sbjct: 78 SIDVAK 83

[Close]

BLAST of Cla97C01G011280.1 vs. NCBI nr
Match: XP_039002217.1 (uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypothetical protein F3Y22_tig00110482pilonHSYRG00220 [Hibiscus syriacus])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 16  DLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 69
           D++ A+  ++  DAT+  MVL+GC RCL+YVM S+ D KCPKCN T LLD  N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

[Close]

BLAST of Cla97C01G011280.1 vs. NCBI nr
Match: XP_022888450.1 (uncharacterized protein LOC111403986 [Olea europaea var. sylvestris])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 10  SESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNL 69
           S  +S+D SL  SNS   +AT  +MVL+GC RCLMYVM ++ D KCPKC  T LLDV + 
Sbjct: 88  SSELSRDESLLYSNS--PEAT--SMVLVGCPRCLMYVMLAEEDPKCPKCKSTVLLDVIHQ 147

Query: 70  VNQASRK 77
            N ++ K
Sbjct: 148 KNTSTSK 150

[Close]

BLAST of Cla97C01G011280.1 vs. NCBI nr
Match: KAB2028179.1 (hypothetical protein ES319_D05G081300v1 [Gossypium barbadense] >KAG4145173.1 hypothetical protein ERO13_D05G081700v2 [Gossypium hirsutum] >TYG67562.1 hypothetical protein ES288_D05G085700v1 [Gossypium darwinii] >TYH69965.1 hypothetical protein ES332_D05G087100v1 [Gossypium tomentosum] >TYI80405.1 hypothetical protein E1A91_D05G085600v1 [Gossypium mustelinum])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 9   NSESISQDLSLAISNSTIEDATT----------VAMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT          ++MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+ +N     N
Sbjct: 91  KSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of Cla97C01G011280.1 vs. NCBI nr
Match: XP_004506211.1 (uncharacterized protein LOC101502581 [Cicer arietinum])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 31  TVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNLVNQASRKNVV 80
           T AM+L+GCTRCLMYVM  ++D KCPKC  T LLD  N     S+K  +
Sbjct: 60  TKAMLLVGCTRCLMYVMLPEIDPKCPKCKSTVLLDFLNNEENTSKKTSI 108

[Close]

BLAST of Cla97C01G011280.1 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-06
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 31 TVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLD 66
          T +MVL+GC RCLMYVM S+ D KCPKC  T LLD
Sbjct: 63 TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLD 97

[Close]

BLAST of Cla97C01G011280.1 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 3  QSFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTT 62
          +S N  N+ S S  +S   +    E+ T  +MVL+GC RCLMYVM S  D KCPKC  T 
Sbjct: 31 RSPNRSNTTSPSSCVSSETNQE--ENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTV 90

Query: 63 LLD 66
          LLD
Sbjct: 91 LLD 91

[Close]

BLAST of Cla97C01G011280.1 vs. ExPASy TrEMBL
Match: A0A6A3AD94 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilonHSYRG00220 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 16  DLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 69
           D++ A+  ++  DAT+  MVL+GC RCL+YVM S+ D KCPKCN T LLD  N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

[Close]

BLAST of Cla97C01G011280.1 vs. ExPASy TrEMBL
Match: A0A5D2KTB2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G087100v1 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 9   NSESISQDLSLAISNSTIEDATT----------VAMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT          ++MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+ +N     N
Sbjct: 91  KSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of Cla97C01G011280.1 vs. ExPASy TrEMBL
Match: A0A5J5REV4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G081300v1 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 9   NSESISQDLSLAISNSTIEDATT----------VAMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT          ++MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+ +N     N
Sbjct: 91  KSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of Cla97C01G011280.1 vs. ExPASy TrEMBL
Match: A0A5D2CHE2 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D05G085700v1 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 9   NSESISQDLSLAISNSTIEDATT----------VAMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT          ++MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+ +N     N
Sbjct: 91  KSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of Cla97C01G011280.1 vs. ExPASy TrEMBL
Match: A0A5D2UUA0 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G085600v1 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 9   NSESISQDLSLAISNSTIEDATT----------VAMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT          ++MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+ +N     N
Sbjct: 91  KSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of Cla97C01G011280.1 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 31 TVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLD 66
          T +MVL+GC RCLMYVM S+ D KCPKC  T LLD
Sbjct: 63 TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLD 97

[Close]

BLAST of Cla97C01G011280.1 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 8.2e-07
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 3  QSFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTT 62
          +S N  N+ S S  +S   +    E+ T  +MVL+GC RCLMYVM S  D KCPKC  T 
Sbjct: 31 RSPNRSNTTSPSSCVSSETNQE--ENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTV 90

Query: 63 LLD 66
          LLD
Sbjct: 91 LLD 91

The following BLAST results are available for this feature:

BLAST of Cla97C01G011280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583700.1	3.9e-19	78.79	hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_039002217.1	1.1e-05	54.72	uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypotheti...	[more]
XP_022888450.1	1.1e-05	52.24	uncharacterized protein LOC111403986 [Olea europaea var. sylvestris]	[more]
KAB2028179.1	1.5e-05	41.77	hypothetical protein ES319_D05G081300v1 [Gossypium barbadense] >KAG4145173.1 hyp...	[more]
XP_004506211.1	1.9e-05	55.10	uncharacterized protein LOC101502581 [Cicer arietinum]	[more]

BLAST of Cla97C01G011280.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	3.0e-06	68.57	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	1.2e-05	49.21	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]

BLAST of Cla97C01G011280.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A3AD94	5.4e-06	54.72	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilon...	[more]
A0A5D2KTB2	7.0e-06	41.77	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G087100v1 P...	[more]
A0A5J5REV4	7.0e-06	41.77	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G081300v1 PE...	[more]
A0A5D2CHE2	7.0e-06	41.77	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D05G085700v1 PE=...	[more]
A0A5D2UUA0	7.0e-06	41.77	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G085600v1 P...	[more]

BLAST of Cla97C01G011280.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	2.2e-07	68.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	8.2e-07	49.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177:SF51	GB\|AAF02129.1	coord: 19..76
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 19..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G011280	Cla97C01G011280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G011280.1-exon	Cla97C01G011280.1-exon-Cla97Chr01:18579939..18580202	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G011280.1-cds	Cla97C01G011280.1-cds-Cla97Chr01:18579939..18580202	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G011280.1	Cla97C01G011280.1-protein	polypeptide