ClCG11G002170.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G002170.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	E3 ubiquitin-protein ligase RING1-like
Location	CG_Chr11: 2280346 .. 2280663 (+)
Sequence length	318
RNA-Seq Expression	ClCG11G002170.2
Synteny	ClCG11G002170.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGCTGCTGTGATGGCTGAGGCGACAAGAAACTTACCGGCGGCATATCCAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTTGGTTGCTGCCAGATCAGCACTTCCGATTCACTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTAGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGACATGTGTACCATGAATCTTGTATTTCCTCTTGGCTTACCGTCGGCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCTAA

mRNA sequence

ATGGCTGCCGCTGCTGTGATGGCTGAGGCGACAAGAAACTTACCGGCGGCATATCCAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTTGGTTGCTGCCAGATCAGCACTTCCGATTCACTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTAGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGACATGTGTACCATGAATCTTGTATTTCCTCTTGGCTTACCGTCGGCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCTAA

Coding sequence (CDS)

ATGGCTGCCGCTGCTGTGATGGCTGAGGCGACAAGAAACTTACCGGCGGCATATCCAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTTGGTTGCTGCCAGATCAGCACTTCCGATTCACTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTAGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGACATGTGTACCATGAATCTTGTATTTCCTCTTGGCTTACCGTCGGCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCTAA

Protein sequence

MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG

Homology

[Close]

BLAST of ClCG11G002170.2 vs. NCBI nr
Match: XP_038877422.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-49
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCA 60
           MAAAAVM E TRNLPA YPIEFLFDLDMVLSGADDFGCCQIS +DSLVADLP VVADVCA
Sbjct: 1   MAAAAVMTEPTRNLPATYPIEFLFDLDMVLSGADDFGCCQISATDSLVADLPIVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           VCLEDF PDE GKQIPCGHVYHESCISSWLTV DCCPLCRC VAG
Sbjct: 61  VCLEDFLPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCHVAG 105

[Close]

BLAST of ClCG11G002170.2 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCA 60
           MAA +V AE TRNL AAYPIEFLFDLDMVLSGADDFGCCQIS SDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           VCLEDFRPDE GKQIPCGHVYHESCISSWL V +CCPLCRCL+AG
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAG 105

[Close]

BLAST of ClCG11G002170.2 vs. NCBI nr
Match: KAG7030453.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCA 60
           MAA +V AE TRNL AAYPIEFLFDLDMVLSGADDFGCCQIS SDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           VCLEDFRPDE GKQIPCGHVYHESCISSWL V +CCPLCRCL++G
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISG 105

[Close]

BLAST of ClCG11G002170.2 vs. NCBI nr
Match: KAG6599476.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCA 60
           MAA +V AE TRNL AAYPIEFLFDLDMVLSGADDFGCCQIS SDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           VCLEDFRPDE GKQIPCGHVYHESCISSWL V +CCPLCRCL++G
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISG 105

[Close]

BLAST of ClCG11G002170.2 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 93/105 (88.57%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCA 60
           MAA +V AE TRNL  AYPIEFLFDLDMVLSGADDFGCCQIS SDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           VCLEDFRPDE GKQIPCGHVYHESCISSWL V +CCPLCRCL+AG
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAG 105

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.0e-09
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCR 101
           C++C +DF+ DE  +++PC H+YHE+CI  WL +   CP+CR
Sbjct: 253 CSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICR 294

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-08
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCR 101
           CAVC++DF      KQ+PC H+YH+ C+  WL + + CP+CR
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCR 265

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-08
Identity = 25/61 (40.98%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 48  VADLPTVVAD--------VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLC 101
           +  LPTV            C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+C
Sbjct: 209 ITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVC 268

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-08
Identity = 25/61 (40.98%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 48  VADLPTVVAD--------VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLC 101
           +  LPTV            C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+C
Sbjct: 210 ITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVC 269

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy Swiss-Prot
Match: Q91YL2 (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-08
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           C VC ED+   E  +Q+PC H++H+SCI  WL   D CP+CR  + G
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 277

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy TrEMBL
Match: A0A6J1G511 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450796 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.2e-49
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCA 60
           MAA +V AE TRNL AAYPIEFLFDLDMVLSGADDFGCCQIS SDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           VCLEDFRPDE GKQIPCGHVYHESCISSWL V +CCPLCRCL+AG
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAG 105

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy TrEMBL
Match: A0A0A0LKR7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 90/105 (85.71%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQISTSDSLVADLPTVVADVCA 60
           MAAAAVM E T NLP+ YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           VCL+DF PDE GKQIPCGHVYHESCISSWLTV DCCPLCRCLVAG
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAG 105

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy TrEMBL
Match: A0A5A7V2P4 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00540 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.0e-44
Identity = 89/106 (83.96%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGC-CQISTSDSLVADLPTVVADVC 60
           MAAAAVM E T  LP+ YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           AVCL+DFRPDE GKQIPCGHVYHESCISSWLTV DCCPLCRCLVAG
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAG 106

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy TrEMBL
Match: A0A1S4DZX3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.0e-44
Identity = 89/106 (83.96%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGC-CQISTSDSLVADLPTVVADVC 60
           MAAAAVM E T  LP+ YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCRCLVAG 106
           AVCL+DFRPDE GKQIPCGHVYHESCISSWLTV DCCPLCRCLVAG
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAG 106

[Close]

BLAST of ClCG11G002170.2 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MAAAAVMAEATRNLPAAYPIEFLFDLDMVLSGADDFGCCQI---STSDSLVADLPTVVAD 60
           MAA AV+AE TRNL AAYP+E LFDLDMVLSG DDFGCC +   ++SDS+VADLPTVVAD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCR 101
           VCAVC EDFR DEGGKQIPCGHVYHE CISSWL V DCCPLCR
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCR 103

[Close]

BLAST of ClCG11G002170.2 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 47  LVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCR 101
           ++ D   V   VCA+C E+F   E GK++ C H+YH SCI SWL + + CP+CR
Sbjct: 126 IITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of ClCG11G002170.2 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-10
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCR 101
           CA+C EDF   E  +++PC H+YH  CI  WLT  + CPLCR
Sbjct: 96  CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCR 137

[Close]

BLAST of ClCG11G002170.2 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-10
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 58  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCR 101
           +CAVC EDF   E  +++PC H+YH  CI  WL+  + CPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of ClCG11G002170.2 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 58  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGDCCPLCR 101
           VCA+C E+   +E   ++PC H YH+ CIS+WL+  + CPLCR
Sbjct: 96  VCAICREELAANERLSELPCRHYYHKECISNWLSNRNTCPLCR 138

[Close]

BLAST of ClCG11G002170.2 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-09
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 44  SDSLVADLPTVVA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVGD 101
           S S +  LPTV           + CAVC+++F      KQ+PC HV+H+ C+  WL + +
Sbjct: 192 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 251

The following BLAST results are available for this feature:

BLAST of ClCG11G002170.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877422.1	9.8e-49	90.48	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]
XP_022946863.1	1.3e-48	89.52	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
KAG7030453.1	2.9e-48	88.57	E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599476.1	2.9e-48	88.57	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
XP_023545409.1	3.7e-48	88.57	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG11G002170.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VHI7	6.0e-09	47.62	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]
P0CH30	3.0e-08	47.62	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q9Y4L5	3.9e-08	40.98	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]
Q9D0C1	3.9e-08	40.98	E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1	[more]
Q91YL2	3.9e-08	46.81	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]

BLAST of ClCG11G002170.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G511	6.2e-49	89.52	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0LKR7	2.9e-46	85.71	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 P...	[more]
A0A5A7V2P4	6.0e-44	83.96	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DZX3	6.0e-44	83.96	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
A0A6J1DM93	1.3e-41	80.58	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of ClCG11G002170.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	3.0e-11	46.30	RING/U-box superfamily protein	[more]
AT2G44330.1	5.6e-10	52.38	RING/U-box superfamily protein	[more]
AT3G60080.1	9.6e-10	51.16	RING/U-box superfamily protein	[more]
AT3G30460.1	4.8e-09	48.84	RING/U-box superfamily protein	[more]
AT3G19950.1	6.2e-09	37.88	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 3.6E-7 score: 39.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 2.5E-11 score: 43.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.666314
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..105 e-value: 5.2E-16 score: 59.6
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 21..103
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 21..103
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG11G002170	ClCG11G002170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G002170.2-exon	ClCG11G002170.2-exon-CG_Chr11:2280346..2280663	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G002170.2-cds	ClCG11G002170.2-cds-CG_Chr11:2280346..2280663	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG11G002170.2	ClCG11G002170.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity