ClCG11G001900.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G001900.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	40S ribosomal protein S30
Location	CG_Chr11: 2009127 .. 2009691 (+)
Sequence length	366
RNA-Seq Expression	ClCG11G001900.2
Synteny	ClCG11G001900.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTCTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGACCTTTGCGTTCTAGCGTACGAAACCGACGAGCCGGTCGCCGAACATCCTGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTGAGACTCAAACTCTCTATCTTCATTTCACATATTTCTTTCTTCTGTTTAATGTTCCATATTAGTCTGTTTCTTCATCCATGTAATCAACTTTCAGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGGTATTTGTTCATTTTCGCTTTCTTCCTTTCTTTGGTTTTGTAAATCATGCTCGAACTTTAATCCGTTTCTTGGTTTTTATGAATGTTAATTTTCTCTTGTAGTTGTTGGCTTTGGAAAGAAGAGAGGACCAAACTCCTCCGAGAAGTAA

mRNA sequence

ATGGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTCTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGACCTTTGCGTTCTAGCGTACGAAACCGACGAGCCGGTCGCCGAACATCCTGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCAAACTCCTCCGAGAAGTAA

Coding sequence (CDS)

ATGGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTCTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGACCTTTGCGTTCTAGCGTACGAAACCGACGAGCCGGTCGCCGAACATCCTGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCAAACTCCTCCGAGAAGTAA

Protein sequence

MEYGLGRLDQILPRLSNPLLYICLTKTLTLIFDLCVLAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Homology

[Close]

BLAST of ClCG11G001900.2 vs. NCBI nr
Match: KAA0061505.1 (Ribosomal protein S30 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 37  LAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR 96
           LA E ++PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR
Sbjct: 3   LADEANKPVDRHPERKKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR 62

Query: 97  MQYNRRFVTAVVGFGKKRGPNSSEK 122
           MQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 63  MQYNRRFVTAVVGFGKKRGPNSSEK 87

[Close]

BLAST of ClCG11G001900.2 vs. NCBI nr
Match: XP_004141043.2 (40S ribosomal protein S30 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 55  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 114
           LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR
Sbjct: 29  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 88

Query: 115 GPNSSEK 122
           GPNSSEK
Sbjct: 89  GPNSSEK 95

[Close]

BLAST of ClCG11G001900.2 vs. NCBI nr
Match: ESR64610.1 (hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypothetical protein CUMW_126480 [Citrus unshiu])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 29  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 88
           TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 37  TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 96

Query: 89  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 122
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 97  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 133

[Close]

BLAST of ClCG11G001900.2 vs. NCBI nr
Match: KDO55923.1 (hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 29  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 88
           TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 1   TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 60

Query: 89  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 122
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 61  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 97

[Close]

BLAST of ClCG11G001900.2 vs. NCBI nr
Match: KAF4346455.1 (hypothetical protein G4B88_007409 [Cannabis sativa])

HSP 1 Score: 128.3 bits (321), Expect = 4.6e-26
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 53  KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 112
           K + +F MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK
Sbjct: 21  KKVKKFTMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 80

Query: 113 KRGPNSSEK 122
           KRGPNSSEK
Sbjct: 81  KRGPNSSEK 89

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 60  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 119
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 120 EK 122
           EK
Sbjct: 61  EK 62

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 62  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 120
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 62  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 120
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 62  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 120
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 62  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 120
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy TrEMBL
Match: A0A5A7V6N6 (40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00660 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 37  LAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR 96
           LA E ++PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR
Sbjct: 3   LADEANKPVDRHPERKKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR 62

Query: 97  MQYNRRFVTAVVGFGKKRGPNSSEK 122
           MQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 63  MQYNRRFVTAVVGFGKKRGPNSSEK 87

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy TrEMBL
Match: A0A0A0LFS8 (40S ribosomal protein S30 OS=Cucumis sativus OX=3659 GN=Csa_2G000610 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 55  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 114
           LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR
Sbjct: 29  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 88

Query: 115 GPNSSEK 122
           GPNSSEK
Sbjct: 89  GPNSSEK 95

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy TrEMBL
Match: A0A067ELF8 (40S ribosomal protein S30 (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g042287mg PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 29  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 88
           TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 1   TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 60

Query: 89  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 122
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 61  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 97

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy TrEMBL
Match: V4UK23 (40S ribosomal protein S30 OS=Citrus clementina OX=85681 GN=CICLE_v10009868mg PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 29  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 88
           TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 37  TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 96

Query: 89  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 122
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 97  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 133

[Close]

BLAST of ClCG11G001900.2 vs. ExPASy TrEMBL
Match: A0A2H5PDI2 (40S ribosomal protein S30 OS=Citrus unshiu OX=55188 GN=CUMW_126480 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 29  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 88
           TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 37  TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 96

Query: 89  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 122
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 97  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 133

[Close]

BLAST of ClCG11G001900.2 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 60  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 119
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 120 EK 122
           EK
Sbjct: 61  EK 62

[Close]

BLAST of ClCG11G001900.2 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 60  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 119
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 120 EK 122
           EK
Sbjct: 61  EK 62

[Close]

BLAST of ClCG11G001900.2 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 60  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 119
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 120 EK 122
           EK
Sbjct: 61  EK 62

The following BLAST results are available for this feature:

BLAST of ClCG11G001900.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061505.1	2.3e-33	90.59	Ribosomal protein S30 [Cucumis melo var. makuwa]	[more]
XP_004141043.2	2.5e-27	100.00	40S ribosomal protein S30 [Cucumis sativus]	[more]
ESR64610.1	3.2e-27	74.23	hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypotheti...	[more]
KDO55923.1	3.2e-27	74.23	hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis]	[more]
KAF4346455.1	4.6e-26	92.75	hypothetical protein G4B88_007409 [Cannabis sativa]	[more]

BLAST of ClCG11G001900.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49689	1.7e-26	96.77	40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3	[more]
P62866	8.2e-18	79.31	40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1	[more]
P62860	8.2e-18	79.31	40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1	[more]
P62861	8.2e-18	79.31	40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1	[more]
P62862	8.2e-18	79.31	40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1	[more]

BLAST of ClCG11G001900.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6N6	1.1e-33	90.59	40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0LFS8	1.2e-27	100.00	40S ribosomal protein S30 OS=Cucumis sativus OX=3659 GN=Csa_2G000610 PE=3 SV=1	[more]
A0A067ELF8	1.6e-27	74.23	40S ribosomal protein S30 (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g04228...	[more]
V4UK23	1.6e-27	74.23	40S ribosomal protein S30 OS=Citrus clementina OX=85681 GN=CICLE_v10009868mg PE=...	[more]
A0A2H5PDI2	1.6e-27	74.23	40S ribosomal protein S30 OS=Citrus unshiu OX=55188 GN=CUMW_126480 PE=3 SV=1	[more]

BLAST of ClCG11G001900.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19750.1	1.2e-27	96.77	Ribosomal protein S30 family protein	[more]
AT4G29390.1	1.2e-27	96.77	Ribosomal protein S30 family protein	[more]
AT5G56670.1	1.2e-27	96.77	Ribosomal protein S30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 62..118 e-value: 1.1E-29 score: 102.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..96
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 60..121
None	No IPR available	PANTHER	PTHR12650:SF28	40S RIBOSOMAL PROTEIN S30	coord: 60..121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG11G001900	ClCG11G001900	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G001900.2-exon	ClCG11G001900.2-exon-CG_Chr11:2009127..2009307	exon
ClCG11G001900.2-exon	ClCG11G001900.2-exon-CG_Chr11:2009405..2009542	exon
ClCG11G001900.2-exon	ClCG11G001900.2-exon-CG_Chr11:2009645..2009691	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G001900.2-cds	ClCG11G001900.2-cds-CG_Chr11:2009127..2009307	CDS
ClCG11G001900.2-cds	ClCG11G001900.2-cds-CG_Chr11:2009405..2009542	CDS
ClCG11G001900.2-cds	ClCG11G001900.2-cds-CG_Chr11:2009645..2009691	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG11G001900.2	ClCG11G001900.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome