ClCG10G021700.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G021700.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 36301724 .. 36306661 (-)
Sequence length	603
RNA-Seq Expression	ClCG10G021700.2
Synteny	ClCG10G021700.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGAAAGGAAGAAAACAGGAAAATTGAAGATGGGGGAGAGGAAGGGTTGAAGGAAGAAGCTGAAATGAACCCATGGGTGCTTCAGGTTTTAGGGTTTATCCAAATTTGCCAACAAAACTTATCTTGGAACCCAAACACCCAAAAGAAAGCTACTGTCGAGCTGGTTTGTCTTTTTCTCGCTAAATAGAATAGAAAACTGTCGGAGTTATCAATGCTTTGACGTTCATCCTACGGCTATAACTCCACTTCTTCATCTGAAAGTCTGTCAACCGCTCGATTAAAGCGGTCGTCCCCCTCAATTCCTTTCTTCCACTAGAATTAACAGGTTGTTTCTTTGATTAATCTTCCACCTCTGTTCTCCAAAGCTGAACCCCTCTATCTCGCTCGCACTCAGAATTCATCAAAAGAAAGGTGAGAAAACGAGAATCTCTATTTGATTATGTTCAGTTTGGATTTATTTCTTCTTCTGGGTCCAAAAATCCGTGATGGATGTTACCCAATCGTAAGATTTCCTTCATGATTTCTTTCAATATTTGAAACCCCCTTTGATTTTTCTGTTCTAAAGTTTGATCGGTTCATGATTTGACAAGTTCTCTCGTTTTTGCACATGAAGCAGATATGGGTTTCTGGACCTTCTTAGAAGGGCTTCTACTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAGCACGCTCAAAGGGCAGGTAATAGGGTTCATCCATGCATGCCAATTCTTGAGAGTTCCACTCATTCTTTTCAACATCATCATCATCATCATCAAGCTCTTCTCTGGTTGATTTCAGTATATAACGTGAAAGAGCTCCCTCTAAATTATTGTATCTTGTAGCATTACATGATCGAATTGAGTGAAATGTAGTTCCATTACTGGTAATATGTTTGTTTGTTCTTGAATGGCAGATTAACACTCTAGTTTTTGCTCTAATGCTCTTAATTTTAGCTTGCTTTTTTTGTTGTCAACCCACTTTGTGAGTTCATTTCTTTTGGTCACACAAACTTGTAGGAAGAATCACCCAGCATATTCATTGACCTCAAAAATCCTCTGTTTATAAGAACACAAACTGATCTATAGGTTCTAAAATACAATTTTGGAGCAACCCAGTTTATCATACATGAGAGTCTTATGCAGAAGAAAGAAACAGAGCCTAGAAATGGTACTAATACATCATTATCAAACACAGAATGCTCAAAAACACTACAAATCAAATCATTCTACTGGTATCATAACTTCGTTAGTTCTCAAAGAAGGCAATGTCCAAGGTGGGTTATATCTCGCCAACACAAAATCCCCAATCACCTTATGCCCATCTTTCTCCAAGCTTTTCTTCAGATTCTCCACCTTCTGCGCCACCACTCCCTCCGTCGCAATTCCGCTGAATCTCACGACGGCGAGTTTTCTCTCCCCTTCTTTCCTTATCACAACACTTCCATCCACCGGTTTAGGAGCCTCCTCCGCCTTCTTGTACTTGCTAGGTAGAACGAACTGCATCGTCACCGGCTTCCCTTCTTCGCCGCCGCCCCCCGTCACCACCGGAGCTGTCATCGAAATCTTCTCCGATTTGGTGATCACCGGCGCCGTCATGGCTACCTTCTCGGACTTGATGTTCTGTGGCTGGCCAATGGCTCCAATGTATTTTGCTAATACGGTGAAGCCACCGTCTCTGTTGCCTCTGAACTGGGTCGGATCATAGGTGACTTCGGCCACCACCGATGGCTCGTATTTGCGGATTTCGTAGTCCGCAGTGGATTGAATGAGCTCGTATTTTGGGGTTTCAACACTGATCTTCCCGAGAATCAAACCCATATTAGGTAAACTTAGTTAAGGAGGTTCAGGGTTGCTGATTTATACGTTGAGAAGAAAGGCGGTTGCTTGAAGGAGGGGTTGGAATTGGGAAGTTCAGCCATGGAATAAGTGGTGGAAGTTGGAGGAGCTGTTTGTGGCTTTTATTTGTCCACGACTACTTCGATGCAAATGGATATGAAGCAGATGAATCAAAGCTTCCATGTGTAAGGAATGCAAATGTCTAGAATCCGTTGTTTTGAAGTTATCCTATGTAAGTTGATTACATGGGATCTTAACCTTATCATGCTGTTTCGAGCATAACCACAGTACCACGGTCCAAATTTTCATCTCAGTTTTTAATTAATTTTGTTTCGTATAATTTTGAAATAGTTATGAAATGTTAAGGATAGTATCATAACTTTCTTTTTAAACAATGGAGTAACCTTTTTAACATTTTTTTTTTTATTTAACTTTGAATTTTTTAGTTTATTTTAGTGGAGTTTGGACATGGGACAATACACTTTGAGAAGATATATATATATATATTTCCTAATATGTAGCATAATAATATATTGACGATAATATTTAATAACGACAGTCATGCATCACTTGTGTTTCGAAGGCACTCTTGGCTTGTACTCAACTTTGCGGGTTGGCTAGTTAGAAGGGGGTGATTTTGGATGACACAAAAACAGAAGTTCGAGCATATAAAATAACAAAATTTGGGGCAAAATAAGCTCGAAGAGGGTTGTCTTGGGCGAAGGTCCACAACCTAGTGAGTTGAAGTGTTAACATTATTCTTCCTTGTATTGAATTGATTTTAAGAGCGAAGACTATCATCATAAATCAACACAGGTCCTTTTAGCATTCAAGAGATCACTCAACATAGGAGCTCGTTTAAGTTTTAACTTCAAGCTCTTATAATCGAGCCACTGTAAGGGAAAGTACACCTTCAATTATTTGAAGCTTTACACAACAATTGAAAAAGATGTAACGATGTCAACAACAAAAAAAGTGTGAAGATGGTGATGGAAGTTTCATCGAGGAAGGGTTTAAGAAAATGATAGAGAAGAGGGAAAGAAAACGCAACCACATTGCCAATTTACGACCCCATCATTTTGTCGTTAGTCAACTAACGATTCAAATAGTCTCGGAATTCAGAATCATTTCTTGAATTTTGAACACTAAATTATTTATTTTAAAACTTTATTGAACAAATAGACATTAACTTAAAAAAAACCTAATGGACTAAAAATGCATTTTGAACATACATATAGATGTAACCTTAAATATTCATAAATCAACAAAAGCGATCCTAAATATTTATACAAAAATAAATTTAATGAATATATAAAAACAAAACAAATCTAAATCATCGTGTGCAAAGAAAAAACCCTAAATCCCATGAGTAAAATTACGCCCCTAACCCTGTGGCACCTTATGTAATGATTCCTTCGTCGATCATTCTAATAATTCTCTTCTGAAAACAGTGCTAGGGTTCGTTTTCTTGACGCCACCGCCCGTCGCCCTTCTTGCTGCGAAACCGCTTTGTTGTCGGTGATATTTCTTTTCGTCTATTCGGCTATCAGTGGTCCTTATAAGTTGTTTCCGTTTCTTCTATTTCGTATTTTACTGTTCATCCGGCCTTTAATCTCATGTTTTCCGGCAGCATCGATGATGAAACAATCTTATCGTTATCCTTGCACTTTGATTTACCGTGAAGAAAATCATGGGGAATATTGTTCCTGAGATGCATTTGTACTTTAGAAGGACTCGTTAGTCTGCGATTGTGTAGATTAAGCATTGCTTTTTTCTAACTTCATATCTGGATCGATGATGTGATTTAAAATCTGCGTTATCTATCTGCAATTTCCTTCTAGGAATTGAAGATGACGGATAATCTCTGAGATCTGTTTTCTTACCCCACTTTCTGCTTCGTTTTCTGTAATCTGGACTATTTGAACTGTTCCCCCTCTGAGTTTCTCAGAGATCTAGGAATTTTCGTTCGTTTGGTTTATTGGTTGTGTGCTTCCTAATGCGGACCTTGGATCCATGATGTTAATGAAAAACTGCGTTATCTATCTGTAAGGTTCCTTCATGGAGTTGATGATATCAATGATTTCTGAGATCCAAACTGCGCTGTTTTGTTCAATAGTTGTAGGTGGATTAGTTTCATTTTAGAACATCAGTTTTCAACTTTATGCCGGTTGGTGGCTGGTGGGTATTGTTGCCAATTTTGATTGAACATAACTTCTTTTTTTTTTTGGCCATATCATCTTTTCTCCACCCACTTCACATCCACCATTTTCAAGATGCAGTCATTTGTAGCTTCCGTGCTTTTTTCTGGCTGATGGGTTTTGCTGCCATTTTAAGCTGGCTGTGGCTGCCGTTTTGTGATTGAACATTCAAACAATTGCTCATCAGTTTCATTTTTGTTTCTGTTTGATCCTTGCTTCCACATGTATATTATTTTGGGTTTTTTTTTTTTTTCCCTGTCCTTTTTCTGCCATTTGTGTTTTGCCGTTTATCTATTTATTTTTGGTATAACATGTCAAATTGATCACTTGTACTAACTGGGCTAATTTAGGAGGCAGAGTTCTGTGTCAAACTAAGGCTAAGACTGATAAGCTTTTGAAAATTGTTTATAGGATAATGTATTTCAAGAATCCATCTTCATGCATTCTCTTTAACAGTAGAGTTGAATGCTCAAAGATATGTGTTGTCCGCACAGTTAGAACCTTGCCTTTCATATATGGTAAACAAACAAAGCTTAAACTATCAAAATTTGATACTTAAATCATGGAACAATGTGATGTATTTTCAAGAGTTTGCTACACTTTTGGGAAGTGAAGGGATTCTTTTTTCACGCAGTTCGAAGAGTCATCTTTTGGAAGCGATCAGGATGCAAATCTAAAAACTAATCTAATGGTGTAGATCTTACAATCTTCTATTCACTGCAATTATGTAATTTATAATTGCTTTGTGGCAAGGAACTTTTAATTTTGGTTTCCAACATTTATGTTGTAATAATAATACCAATGATTTAAAAATAAAGCCGGTTAAGCTTGGTAGTCTTT

mRNA sequence

ATGAGTAGAAAGGAAGAAAACAGGAAAATTGAAGATGGGGGAGAGGAAGGGTTGAAGGAAGAAGCTGAAATGAACCCATGGGTGCTTCAGGTTTTAGGGTTTATCCAAATTTGCCAACAAAACTTATCTTGGAACCCAAACACCCAAAAGAAAGCTACTGTCGAGCTGGTTGTTTCTTTGATTAATCTTCCACCTCTGTTCTCCAAAGCTGAACCCCTCTATCTCGCTCGCACTCAGAATTCATCAAAAGAAAGATATGGGTTTCTGGACCTTCTTAGAAGGGCTTCTACTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAGCACGCTCAAAGGGCAGTTCGAAGAGTCATCTTTTGGAAGCGATCAGGATGCAAATCTAAAAACTAATCTAATGGTGTAGATCTTACAATCTTCTATTCACTGCAATTATGTAATTTATAATTGCTTTGTGGCAAGGAACTTTTAATTTTGGTTTCCAACATTTATGTTGTAATAATAATACCAATGATTTAAAAATAAAGCCGGTTAAGCTTGGTAGTCTTT

Coding sequence (CDS)

ATGAGTAGAAAGGAAGAAAACAGGAAAATTGAAGATGGGGGAGAGGAAGGGTTGAAGGAAGAAGCTGAAATGAACCCATGGGTGCTTCAGGTTTTAGGGTTTATCCAAATTTGCCAACAAAACTTATCTTGGAACCCAAACACCCAAAAGAAAGCTACTGTCGAGCTGGTTGTTTCTTTGATTAATCTTCCACCTCTGTTCTCCAAAGCTGAACCCCTCTATCTCGCTCGCACTCAGAATTCATCAAAAGAAAGATATGGGTTTCTGGACCTTCTTAGAAGGGCTTCTACTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAGCACGCTCAAAGGGCAGTTCGAAGAGTCATCTTTTGGAAGCGATCAGGATGCAAATCTAAAAACTAA

Protein sequence

MSRKEENRKIEDGGEEGLKEEAEMNPWVLQVLGFIQICQQNLSWNPNTQKKATVELVVSLINLPPLFSKAEPLYLARTQNSSKERYGFLDLLRRASTVCKCLCNSERGSFSCSERMDISRDVERKKKHAQRAVRRVIFWKRSGCKSKN

Homology

[Close]

BLAST of ClCG10G021700.2 vs. NCBI nr
Match: KAG6596369.1 (hypothetical protein SDJN03_09549, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05
Identity = 35/67 (52.24%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 66  LFSKAEPLYLARTQNSSKERYGFLDLLRRASTVCKCLCNSERGSFSCSERMDISRDVERK 125
           LFS+ E       + SS ERY  LD   RAS V K L NS+RGS  CSERMD+    ER+
Sbjct: 28  LFSRPETNTNRLLRKSSNERYAILDFFGRASAVRKRLRNSKRGSIPCSERMDVGGYAERR 87

Query: 126 KKHAQRA 133
           KK AQ A
Sbjct: 88  KKLAQSA 94

The following BLAST results are available for this feature:

BLAST of ClCG10G021700.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596369.1	3.2e-05	52.24	hypothetical protein SDJN03_09549, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG10G021700.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G021700.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G021700.2 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G021700	ClCG10G021700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G021700.2-exon	ClCG10G021700.2-exon-CG_Chr10:36301724..36301929	exon
ClCG10G021700.2-exon	ClCG10G021700.2-exon-CG_Chr10:36305898..36306040	exon
ClCG10G021700.2-exon	ClCG10G021700.2-exon-CG_Chr10:36306246..36306331	exon
ClCG10G021700.2-exon	ClCG10G021700.2-exon-CG_Chr10:36306494..36306661	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G021700.2-three_prime_utr	ClCG10G021700.2-three_prime_utr-CG_Chr10:36301724..36301879	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G021700.2-cds	ClCG10G021700.2-cds-CG_Chr10:36301880..36301929	CDS
ClCG10G021700.2-cds	ClCG10G021700.2-cds-CG_Chr10:36305898..36306040	CDS
ClCG10G021700.2-cds	ClCG10G021700.2-cds-CG_Chr10:36306246..36306331	CDS
ClCG10G021700.2-cds	ClCG10G021700.2-cds-CG_Chr10:36306494..36306661	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G021700.2	ClCG10G021700.2-protein	polypeptide