ClCG10G019230.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G019230.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RAB6-interacting golgin
Location	CG_Chr10: 34225563 .. 34227917 (+)
Sequence length	1180
RNA-Seq Expression	ClCG10G019230.2
Synteny	ClCG10G019230.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAAGCTGGTTGGGCACTTTGAAAAGGCATTCTATTCTATTCTTAGTTTTTATAAGCACTTCGCAATACCCATAACCCACAGCTGAAAAGAAAAATTGAAATACAGCACAAACCCCATCATTTCAAAAGCAAAAGCAAAAGAGAAGAGAGAGAATACACAAACTCAAGAGAGAGAAAAAAGCAACAAACCCAGAAAGAAAGGAAGAAGAACAGGAAGAAGAAGAAGAAGAACAGAGGAAATAGAAGGAAATTCAAAGAAGAAGAAAAAGGGTTTTGTAGTTTAAGACGATGCAGACCGAACAGGCTAATCAACAGCAACAATTAGTGGTGCAGAACAACACAGGAAGCTTAAGCTTTAGCAGCCATTTGTCAAAGGAAGATGAAGAGATTTCCAGGTCGGCTCTCTCCACTTTCAGAGCTAAAGAAGAGGAGATCGAGAGGAAGAAGATGGAGGTCAGAGAGAAGGTTCAAGCACAGTTAGGCCGAGTTGAAGAAGAAACCAAACGTCTCGCTTGCATCCGTGAGGTAAGGAGGGAACAATTTTTTTCACAAGATTTTAGGGGTTTTACCTCGAAATTTTCATGGGTTTTTCTTAGATTTTGGTTTTTGAGAAACTCTTTTAACTTTTCTGCTGTGTTTTACATGAATTTGGTGAGTTGGGTTTGGGGGAAAAGTTGGGTATAAAATTGTAGAAGATCTCTTCCATATGACTGTAATTTTGGGGGAAATCTTTGCCAAAAAGGTCTGAGGACAAGGGGGTTTTAACCCCTTTTTGCATGATTTAGTTCTATTATCTATGGGGTTTGGGATTAAATTATTGTTTTATCAAGGAATTAGGAGCAGCTTTATGTCAGATTTGTAAGTTTCTTTGTATTATTTTGACTTACATTCTTAACCTATAACCTTTATCAGATTAATGTTCCATTTTTTTGTGTGTATTTTCCATACTTTAGTTACCTGAAAATGTTAGAAGAAACATGAGGCTCTGATCTGAATGTTAGCTTTCCCTTTTTGGGTGTTCTCTTCAAACCATTCTATGGCAAGGAGCAAGAGAACTTAAAAGAGCTCAAAAAACACCTCATTCCCTAGAGAGAAGAGAAATTCTCATTTGCACAGTTTCTCTAAGTTCTTTGCTCATGAATTCAACAATGCTTTGGTGTCGGTCGGTCGAAAGAGTCATTGAGTTCTAAGATTAGCTTAAGTGGACAAGCAATTAGAAGATGAAGAGTTTGTCTATTAAACAAAAGATATAGCAATGTCTTGGTTTCGAATTGGTTTTTGTTGTTCTTGTTGTGTTGGTTAATGAAATGAAGTTTTGCAAACACCAGGAACTTGAGGCCTTGGCAGATCCAATGAGGAAGGAAGTAGCACAGGTTCGTAAAAAGATCGATGCTGTAAACAAGGAATTAAAGCCTCTTGGACATACCTGTCAAAAGAAGGTAAGATTTGGGGGGAAGGAATAGCTGTGTGGACAAGCATTGCCTAGCATATAAGATGATGTTGCATTCTGTGAATCTCAATTATTGTACCTTACAATATCAAATAGGACCACTGAGCTGGTTTTTGTATTGTCTGTCATAGGAAAAAGAGTACAAGGAAGCCCTCGAAGCCTTTAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACAAAATTAATGGAGGTAAGTTCCCTTGAACCCCCTTCGTCTTTTTCATTGTCTGCACGTCAAACGTCATAAATAACCATGTAGTAGGAACCAAGTTTTGCACGTCTGGGGGCCATTCAATTAATTTTGAACCTTATCGATTTCAACGTATCAGCTCAGCAATTGAAAAAACCAAGCTGAAGTCAGGGAAATCACACAACTGTTCAAGGGAACTTGAATGGCCTCCATTAGTTGGAAAACTCTTTTTCCTTTTCGGGTTTCAATTGATGGATTGATTTGCTTTTTTTTTTTTTTCCGGTGGGCAGCTGGTGAGTGAAAGTGAGAGGTTGAGGCTGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATACGATTCGGTAACTGAATTGATTGATTGATTGATTGATTGGAGCGACGGATGACAAAGTGATAACCCTCTGTTTATTAGGCTTTTGGTGTGTGATGTATTTAATATAAAGAAGAAGAAAAAGGACTTGTTTGTGTATTTATTGAAATCTGGGTGTTCTCCGTGTTTTGGGTGTATTTTTATAATTTGTCTTTGTTTGTTTATTTTTCCTCTAGAGAAGTTACTCAAAACATTTAACTGATTTTAGGAAGGGAATTGCCCTACAAAACAGGTTTGTAACTGATCTCCCACTTTGTTTCTTTTCTTTTTTTTCCTCTTTTTCTTATCAACCTCACTATCTC

mRNA sequence

GGTAAGCTGGTTGGGCACTTTGAAAAGGCATTCTATTCTATTCTTAGTTTTTATAAGCACTTCGCAATACCCATAACCCACAGCTGAAAAGAAAAATTGAAATACAGCACAAACCCCATCATTTCAAAAGCAAAAGCAAAAGAGAAGAGAGAGAATACACAAACTCAAGAGAGAGAAAAAAGCAACAAACCCAGAAAGAAAGGAAGAAGAACAGGAAGAAGAAGAAGAAGAACAGAGGAAATAGAAGGAAATTCAAAGAAGAAGAAAAAGGGTTTTGTAGTTTAAGACGATGCAGACCGAACAGGCTAATCAACAGCAACAATTAGTGGTGCAGAACAACACAGGAAGCTTAAGCTTTAGCAGCCATTTGTCAAAGGAAGATGAAGAGATTTCCAGGTCGGCTCTCTCCACTTTCAGAGCTAAAGAAGAGGAGATCGAGAGGAAGAAGATGGAGGTCAGAGAGAAGGTTCAAGCACAGTTAGGCCGAGTTGAAGAAGAAACCAAACGTCTCGCTTGCATCCGTGAGGAACTTGAGGCCTTGGCAGATCCAATGAGGAAGGAAGTAGCACAGGTTCGTAAAAAGATCGATGCTGTAAACAAGGAATTAAAGCCTCTTGGACATACCTGTCAAAAGAAGGAAAAAGAGTACAAGGAAGCCCTCGAAGCCTTTAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACAAAATTAATGGAGGAACCAAGTTTTGCACGTCTGGGGGCCATTCAATTAATTTTGAACCTTATCGATTTCAACCTGGTGAGTGAAAGTGAGAGGTTGAGGCTGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATACGATTCGGTAACTGAATTGATTGATTGATTGATTGATTGGAGCGACGGATGACAAAGTGATAACCCTCTGTTTATTAGGCTTTTGGTGTGTGATGTATTTAATATAAAGAAGAAGAAAAAGGACTTGTTTGTGTATTTATTGAAATCTGGGTGTTCTCCGTGTTTTGGGTGTATTTTTATAATTTGTCTTTGTTTGTTTATTTTTCCTCTAGAGAAGTTACTCAAAACATTTAACTGATTTTAGGAAGGGAATTGCCCTACAAAACAGGTTTGTAACTGATCTCCCACTTTGTTTCTTTTCTTTTTTTTCCTCTTTTTCTTATCAACCTCACTATCTC

Coding sequence (CDS)

ATGCAGACCGAACAGGCTAATCAACAGCAACAATTAGTGGTGCAGAACAACACAGGAAGCTTAAGCTTTAGCAGCCATTTGTCAAAGGAAGATGAAGAGATTTCCAGGTCGGCTCTCTCCACTTTCAGAGCTAAAGAAGAGGAGATCGAGAGGAAGAAGATGGAGGTCAGAGAGAAGGTTCAAGCACAGTTAGGCCGAGTTGAAGAAGAAACCAAACGTCTCGCTTGCATCCGTGAGGAACTTGAGGCCTTGGCAGATCCAATGAGGAAGGAAGTAGCACAGGTTCGTAAAAAGATCGATGCTGTAAACAAGGAATTAAAGCCTCTTGGACATACCTGTCAAAAGAAGGAAAAAGAGTACAAGGAAGCCCTCGAAGCCTTTAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACAAAATTAATGGAGGAACCAAGTTTTGCACGTCTGGGGGCCATTCAATTAATTTTGAACCTTATCGATTTCAACCTGGTGAGTGAAAGTGAGAGGTTGAGGCTGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATACGATTCGGTAA

Protein sequence

MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELSKNIDTIR

Homology

[Close]

BLAST of ClCG10G019230.2 vs. NCBI nr
Match: XP_038903091.1 (GRB10-interacting GYF protein 2-like [Benincasa hispida])

HSP 1 Score: 282.3 bits (721), Expect = 3.0e-72
Identity = 165/187 (88.24%), Postives = 166/187 (88.77%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQTEQA QQQQL+VQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQTEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEALEAFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALEAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. NCBI nr
Match: XP_004137876.1 (GRB10-interacting GYF protein 2 [Cucumis sativus] >KGN59071.1 hypothetical protein Csa_000951 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71
Identity = 164/187 (87.70%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQL+VQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEALEAFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALEAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. NCBI nr
Match: XP_008442808.1 (PREDICTED: uncharacterized protein LOC103486581 [Cucumis melo] >KAA0043908.1 putative DNA double-strand break repair Rad50 ATPase isoform X2 [Cucumis melo var. makuwa] >TYK25229.1 putative DNA double-strand break repair Rad50 ATPase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 3.3e-71
Identity = 163/187 (87.17%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQL+VQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEALEAFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALEAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. NCBI nr
Match: XP_022945279.1 (uncharacterized protein LOC111449572 [Cucurbita moschata] >XP_023005860.1 uncharacterized protein LOC111498737 [Cucurbita maxima] >XP_023539891.1 uncharacterized protein LOC111800435 [Cucurbita pepo subsp. pepo] >KAG6596553.1 hypothetical protein SDJN03_09733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028089.1 hypothetical protein SDJN02_09269 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 161/187 (86.10%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQLVVQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEAL+AFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALDAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. NCBI nr
Match: XP_022144720.1 (uncharacterized protein LOC111014340 [Momordica charantia])

HSP 1 Score: 265.8 bits (678), Expect = 2.9e-67
Identity = 158/187 (84.49%), Postives = 162/187 (86.63%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQTEQ   QQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQTEQ--PQQQLMVQNNQGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           K+AL+AFN+KNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KDALDAFNEKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 165

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 165

[Close]

BLAST of ClCG10G019230.2 vs. ExPASy TrEMBL
Match: A0A0A0LGI7 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_3G751460 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.1e-72
Identity = 164/187 (87.70%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQL+VQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEALEAFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALEAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. ExPASy TrEMBL
Match: A0A5D3DPH8 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003590 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.6e-71
Identity = 163/187 (87.17%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQL+VQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEALEAFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALEAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. ExPASy TrEMBL
Match: A0A1S3B6L6 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103486581 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.6e-71
Identity = 163/187 (87.17%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQL+VQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEALEAFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALEAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. ExPASy TrEMBL
Match: A0A6J1KYK3 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111498737 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 161/187 (86.10%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQLVVQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEAL+AFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALDAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. ExPASy TrEMBL
Match: A0A6J1G0J9 (RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111449572 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 161/187 (86.10%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MQTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQA QQQQLVVQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELS 180
           KEAL+AFNDKNKEKVQLITKLME                    LVSESERLRLKKLEELS
Sbjct: 121 KEALDAFNDKNKEKVQLITKLME--------------------LVSESERLRLKKLEELS 167

Query: 181 KNIDTIR 188
           KNIDTIR
Sbjct: 181 KNIDTIR 167

[Close]

BLAST of ClCG10G019230.2 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 219.2 bits (557), Expect = 2.9e-57
Identity = 125/169 (73.96%), Postives = 142/169 (84.02%), Query Frame = 0


Query: 18  TGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACI 77
           +GS+SFSS +SKEDEE+SR+ALS FRAKEEEIE+KKME+RE+VQAQLGRVEEETKRLA I
Sbjct: 29  SGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALI 88

Query: 78  REELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQL 137
           REELE LADPMRKEVA VRKKID+VNKELKPLGHT QKKE+EYKEALEAFN+KN+EKVQL
Sbjct: 89  REELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQL 148

Query: 138 ITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELSKNIDTI 187
           IT+LME                    LV ESE++R+KKLEELSKNID+I
Sbjct: 149 ITRLME--------------------LVGESEKMRMKKLEELSKNIDSI 177

[Close]

BLAST of ClCG10G019230.2 vs. TAIR 10
Match: AT2G36410.1 (Family of unknown function (DUF662) )

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-53
Identity = 120/185 (64.86%), Postives = 148/185 (80.00%), Query Frame = 0


Query: 2   QTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ 61
           Q +   QQQ   +  +TGSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++Q
Sbjct: 28  QPQPQPQQQSNEMVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQ 87

Query: 62  AQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYK 121
           AQLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRKKID+VNKELKPLG T QKKE+EYK
Sbjct: 88  AQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYK 147

Query: 122 EALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELSK 181
           EAL+ FN+KN+EKVQLITKLME                    LV ESE+LR+ KLEELSK
Sbjct: 148 EALDTFNEKNREKVQLITKLMEME-----------------QLVGESEKLRMIKLEELSK 195

Query: 182 NIDTI 187
           +I+T+
Sbjct: 208 SIETV 195

[Close]

BLAST of ClCG10G019230.2 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 205.7 bits (522), Expect = 3.3e-53
Identity = 120/185 (64.86%), Postives = 148/185 (80.00%), Query Frame = 0


Query: 2   QTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ 61
           Q +   QQQ   +  +TGSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++Q
Sbjct: 28  QPQPQPQQQSNEMVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQ 87

Query: 62  AQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYK 121
           AQLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRKKID+VNKELKPLG T QKKE+EYK
Sbjct: 88  AQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYK 147

Query: 122 EALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELSK 181
           EAL+ FN+KN+EKVQLITKLME                    LV ESE+LR+ KLEELSK
Sbjct: 148 EALDTFNEKNREKVQLITKLME--------------------LVGESEKLRMIKLEELSK 192

Query: 182 NIDTI 187
           +I+T+
Sbjct: 208 SIETV 192

[Close]

BLAST of ClCG10G019230.2 vs. TAIR 10
Match: AT2G36410.3 (Family of unknown function (DUF662) )

HSP 1 Score: 201.8 bits (512), Expect = 4.7e-52
Identity = 119/185 (64.32%), Postives = 146/185 (78.92%), Query Frame = 0


Query: 2   QTEQANQQQQLVVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ 61
           Q +   QQQ   +  +TGSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++Q
Sbjct: 28  QPQPQPQQQSNEMVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQ 87

Query: 62  AQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYK 121
           AQLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRKKID+VNKELKPLG T QKK  EYK
Sbjct: 88  AQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKVMEYK 147

Query: 122 EALEAFNDKNKEKVQLITKLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELSK 181
           EAL+ FN+KN+EKVQLITKLME                    LV ESE+LR+ KLEELSK
Sbjct: 148 EALDTFNEKNREKVQLITKLME--------------------LVGESEKLRMIKLEELSK 192

Query: 182 NIDTI 187
           +I+T+
Sbjct: 208 SIETV 192

[Close]

BLAST of ClCG10G019230.2 vs. TAIR 10
Match: AT3G52920.1 (Family of unknown function (DUF662) )

HSP 1 Score: 201.1 bits (510), Expect = 8.1e-52
Identity = 118/166 (71.08%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 20  SLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIRE 79
           SLSFSS +SKEDEE++RSALS FRAKE+EIE++KMEVRE+V+AQLGRVEEET+RLA IRE
Sbjct: 17  SLSFSSQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIRE 76

Query: 80  ELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLIT 139
           ELE +ADPMRKEV  VRKKID+VNKELKPLG T QKKE+EYKEAL+ FN+KN+EKVQLIT
Sbjct: 77  ELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLIT 136

Query: 140 KLMEEPSFARLGAIQLILNLIDFNLVSESERLRLKKLEELSKNIDT 186
           KLME      +G            LV ESE+LRLKKL+ELS++IDT
Sbjct: 137 KLME------MG-----------QLVGESEKLRLKKLDELSRSIDT 165

The following BLAST results are available for this feature:

BLAST of ClCG10G019230.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903091.1	3.0e-72	88.24	GRB10-interacting GYF protein 2-like [Benincasa hispida]	[more]
XP_004137876.1	1.5e-71	87.70	GRB10-interacting GYF protein 2 [Cucumis sativus] >KGN59071.1 hypothetical prote...	[more]
XP_008442808.1	3.3e-71	87.17	PREDICTED: uncharacterized protein LOC103486581 [Cucumis melo] >KAA0043908.1 put...	[more]
XP_022945279.1	4.7e-70	86.10	uncharacterized protein LOC111449572 [Cucurbita moschata] >XP_023005860.1 unchar...	[more]
XP_022144720.1	2.9e-67	84.49	uncharacterized protein LOC111014340 [Momordica charantia]	[more]

BLAST of ClCG10G019230.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G019230.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGI7	7.1e-72	87.70	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_3G751460 PE=3 SV=1	[more]
A0A5D3DPH8	1.6e-71	87.17	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B6L6	1.6e-71	87.17	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103486581 PE=3 SV=1	[more]
A0A6J1KYK3	2.3e-70	86.10	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111498737 PE=3 SV=1	[more]
A0A6J1G0J9	2.3e-70	86.10	RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111449572 PE=3 SV=1	[more]

BLAST of ClCG10G019230.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	2.9e-57	73.96	Family of unknown function (DUF662)	[more]
AT2G36410.1	2.5e-53	64.86	Family of unknown function (DUF662)	[more]
AT2G36410.2	3.3e-53	64.86	Family of unknown function (DUF662)	[more]
AT2G36410.3	4.7e-52	64.32	Family of unknown function (DUF662)	[more]
AT3G52920.1	8.1e-52	71.08	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..144
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21470:SF8	EXPRESSED PROTEIN	coord: 153..186 coord: 8..145
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 18..143 e-value: 1.8E-63 score: 213.0 coord: 154..185 e-value: 9.3E-7 score: 28.8
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 153..186 coord: 8..145

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G019230	ClCG10G019230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G019230.2-exon	ClCG10G019230.2-exon-CG_Chr10:34225563..34226088	exon
ClCG10G019230.2-exon	ClCG10G019230.2-exon-CG_Chr10:34226892..34227002	exon
ClCG10G019230.2-exon	ClCG10G019230.2-exon-CG_Chr10:34227145..34227225	exon
ClCG10G019230.2-exon	ClCG10G019230.2-exon-CG_Chr10:34227298..34227357	exon
ClCG10G019230.2-exon	ClCG10G019230.2-exon-CG_Chr10:34227516..34227917	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G019230.2-five_prime_utr	ClCG10G019230.2-five_prime_utr-CG_Chr10:34225563..34225851	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G019230.2-cds	ClCG10G019230.2-cds-CG_Chr10:34225852..34226088	CDS
ClCG10G019230.2-cds	ClCG10G019230.2-cds-CG_Chr10:34226892..34227002	CDS
ClCG10G019230.2-cds	ClCG10G019230.2-cds-CG_Chr10:34227145..34227225	CDS
ClCG10G019230.2-cds	ClCG10G019230.2-cds-CG_Chr10:34227298..34227357	CDS
ClCG10G019230.2-cds	ClCG10G019230.2-cds-CG_Chr10:34227516..34227590	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G019230.2-three_prime_utr	ClCG10G019230.2-three_prime_utr-CG_Chr10:34227591..34227917	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G019230.2	ClCG10G019230.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus