ClCG10G012700.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G012700.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transmembrane 9 superfamily member
Location	CG_Chr10: 26748939 .. 26750417 (-)
Sequence length	309
RNA-Seq Expression	ClCG10G012700.1
Synteny	ClCG10G012700.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGATTTTGGAATCCGACGCCGGTGAGATATTCGTCAAAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTCAGTATTCGCCGGTTTCTCGCGGCTCTTTCTGACCTTCCTCCCGGCGGCGAGCTTTCTCCGTCACCCAGAGTTCAAACTCCGTCGTCTGTTAGCCGGGATCGCTCCGATGACGGTGGCAGGTTTTAGAAAATCAAATCGGATTATCTCGGATCGAATTTAACCGATTCCGATTCACCAGTATTGGGTTAGCTATGTAAAGTGAAAAGGGCGTAGGGGTAATTTATGTTATTTGTTAAAATAGAGGGTTGGTTTTGTGAATTCAGATGATTTGTATTTGTTATTTGAGTGATTCTTTTGTTCTTTGGTAATGGAAATTATTTGATTGGTGCATTTAAAATACTTTCATTCATATATTTTTTAATCCCAACAGGTATTTTCCCATTTTGTTGATTATTTGATTGGATTAACCATATTGAATTATGCATGAATTTATATAGTACAACGACATGTACAATGTAAAAATTATATTGACTAATTAATTAAAGTCTTGTATTGTAATCATTTTGTTTTTTGTTTTTATTTTTGAAAATTAAGTCTATAAACATTATTTTTCACCTTCAAAATTATTTATTTGTTGTTTATTTTTACTAATGGTTATAAGAAATACCTTTTAAGTTTGTTATTTGTTTAAAAAATATATCTATATTTTCAAAAGTTTCAATATTACTCCATTAATTTTCAAAAATACCTTTTGAATAAAAATGTTTTAGAACTTTCGATGGAAATTGAAATATGCAATGGTATGGCAATGACCTATAACTAAATTTTGGATCGCCATATCACTTAAGGCCATTGTCATACAATCCTAAGTCTAATTTTTTATTTAAAACTCTAAATGATTTATACTTCAATAATAGTTTTCTAAAACAATATGAAAGGTAAGGAGTAATATTATAACTTTTTAAAGTATAAAAGTGTTTTGGAGACAAAGAAAACAAATTTTAAGTGTAATTTTTATAATTCAACTTAATGATTTTGGCAAAACTTTAGTCAACTCAATTCTCCCTCTATTTCATTCTTTTTAGTATACCAACAGCGAAAATAAAAAATCGAAATTTTGAACTTTTAAGGAAGAAGATCATATCAATAAGTCAATCAACAATCTTGTTCTATTTGAAACTTTATTGACATTCCTCCCAAATGATCCATAAGAAATGGTTGAAATTTCAAAATTGTTATATTCTACGTCTATGCATGCCCACGAAAAGCAAAAAAAGGATTAATTATAAAAAAGAAACTCTCATTTTCGCTTACGTGTGAATAATTTTAATGTTATTATTACTTTTTAGAACATCTTTACCGTTTACAGAATATTAA

mRNA sequence

ATGACGCCGATTTTGGAATCCGACGCCGGTGAGATATTCGTCAAAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTCAGTATTCGCCGGTTTCTCGCGGCTCTTTCTGACCTTCCTCCCGGCGGCGAGCTTTCTCCGTCACCCAGAGTTCAAACTCCGTCGTCTGTTAGCCGGGATCGCTCCGATGACGGTGGCAGAACATCTTTACCGTTTACAGAATATTAA

Coding sequence (CDS)

ATGACGCCGATTTTGGAATCCGACGCCGGTGAGATATTCGTCAAAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTCAGTATTCGCCGGTTTCTCGCGGCTCTTTCTGACCTTCCTCCCGGCGGCGAGCTTTCTCCGTCACCCAGAGTTCAAACTCCGTCGTCTGTTAGCCGGGATCGCTCCGATGACGGTGGCAGAACATCTTTACCGTTTACAGAATATTAA

Protein sequence

MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVSRDRSDDGGRTSLPFTEY

Homology

[Close]

BLAST of ClCG10G012700.1 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 5.4e-36
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPILESD  E+FVKIAMF FVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPRVQTPSSVSRDRSDDGGR 95
          AALSDLPPGGE+SP+PRVQTPSS  RD SDDGGR
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGR 94

[Close]

BLAST of ClCG10G012700.1 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-35
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI ++DAGE+FV+IAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPRVQTPSSVSRDRSDDGGR 95
          AALSDLPPGGELSPS +V TPSS  RDRSDDGGR
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR 94

[Close]

BLAST of ClCG10G012700.1 vs. NCBI nr
Match: KAG6606858.1 (hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036564.1 hypothetical protein SDJN02_00183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M PILE DAGE FVKIAMF+ VQLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRRFL
Sbjct: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPRVQTPSSVSRDRSDDGGR 95
          AALSD+P GGELSPS RV+TPS + R+ SDDGGR
Sbjct: 61 AALSDMPSGGELSPSSRVRTPSPIHREHSDDGGR 94

[Close]

BLAST of ClCG10G012700.1 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 78/94 (82.98%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M  ILE D   IF+KIAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSPRVQTPSSVSRDRSDDGGR 95
          AALSDLPPGGELSPS  V TPSSV R+RSDD GR
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGR 94

[Close]

BLAST of ClCG10G012700.1 vs. NCBI nr
Match: XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 uncharacterized protein E6C27_scaffold1614G00240 [Cucumis melo var. makuwa] >TYK04160.1 uncharacterized protein E5676_scaffold148G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-30
Identity = 79/92 (85.87%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI E+DAGE+FV+IAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPRVQTPSSVSRDRSDDG 93
          AALSDLPPGGELS       PSSV R RSDDG
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDDG 85

[Close]

BLAST of ClCG10G012700.1 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-30
Identity = 79/92 (85.87%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI E+DAGE+FV+IAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPRVQTPSSVSRDRSDDG 93
          AALSDLPPGGELS       PSSV R RSDDG
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDDG 85

[Close]

BLAST of ClCG10G012700.1 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-30
Identity = 79/92 (85.87%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MTPILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI E+DAGE+FV+IAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPRVQTPSSVSRDRSDDG 93
          AALSDLPPGGELS       PSSV R RSDDG
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDDG 85

[Close]

BLAST of ClCG10G012700.1 vs. ExPASy TrEMBL
Match: B9REM2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 4  ILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I+ES  G++ +K+AMF  VQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL
Sbjct: 3  IMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLAAL 62

Query: 64 SDLPPGGELSPSPR 78
           DLP  GELSPSP+
Sbjct: 63 QDLPASGELSPSPK 75

[Close]

BLAST of ClCG10G012700.1 vs. ExPASy TrEMBL
Match: A0A6J0PQA3 (uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109506509 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 5  LESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALS 64
          L S   ++ +K+AMFV VQ LVYLILSKSSN+FS   K RSLSF+  RSVSIRR LAALS
Sbjct: 7  LFSQPSDVLLKVAMFVLVQALVYLILSKSSNIFST-TKTRSLSFRTVRSVSIRRMLAALS 66

Query: 65 DLPPGGELSPSPRVQTPSSVSRDRSD 91
          DLPPGGE SPS  V   SS S D  D
Sbjct: 67 DLPPGGEPSPSSSVSPASSPSSDHKD 91

[Close]

BLAST of ClCG10G012700.1 vs. ExPASy TrEMBL
Match: U7DUH6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G024300 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 4  ILESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          ++ES  G++ +K+AMFV VQ LVYLILSKSSN+FS     RS SFK ARSVSIRR LA L
Sbjct: 2  MMESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVL 61

Query: 64 SDLPPGGELSP----SPRVQTPS-SVSRDR 89
           DLPPGGELSP    S +VQ+P+   S DR
Sbjct: 62 QDLPPGGELSPASSKSTQVQSPTVEKSEDR 91

[Close]

BLAST of ClCG10G012700.1 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.9e-13
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  LESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAAL 64
          ++   G + +K+A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL
Sbjct: 1  MDGGLGTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAAL 60

Query: 65 SDLPPGGELSPSPRVQTPSS 84
           D+P G ++SPS    + SS
Sbjct: 61 QDIPAGDDMSPSSNGSSSSS 80

[Close]

BLAST of ClCG10G012700.1 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 5  LESDAGEIFVKIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAAL 64
          +E     + +K+++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L
Sbjct: 1  MEGSFEGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVL 60

Query: 65 SDLPPGGELSPS 76
           D+P GGE+SPS
Sbjct: 61 QDMPAGGEMSPS 72

The following BLAST results are available for this feature:

BLAST of ClCG10G012700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905322.1	5.4e-36	90.43	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
XP_011651805.2	2.1e-35	87.23	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
KAG6606858.1	2.6e-30	79.79	hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018107.1	2.6e-30	82.98	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008461750.1	4.5e-30	85.87	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 unc...	[more]

BLAST of ClCG10G012700.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G012700.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	2.2e-30	85.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	2.2e-30	85.87	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
B9REM2	3.6e-17	71.62	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1	[more]
A0A6J0PQA3	2.3e-16	65.12	uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 G...	[more]
U7DUH6	3.0e-16	62.22	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G024300 PE=4 ...	[more]

BLAST of ClCG10G012700.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31945.1	6.9e-13	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G05575.1	1.5e-12	51.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..102
None	No IPR available	PANTHER	PTHR34268:SF8	OS01G0321850 PROTEIN	coord: 6..94
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 6..94

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G012700	ClCG10G012700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G012700.1-exon	ClCG10G012700.1-exon-CG_Chr10:26748939..26748966	exon
ClCG10G012700.1-exon	ClCG10G012700.1-exon-CG_Chr10:26750137..26750417	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G012700.1-cds	ClCG10G012700.1-cds-CG_Chr10:26748939..26748966	CDS
ClCG10G012700.1-cds	ClCG10G012700.1-cds-CG_Chr10:26750137..26750417	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G012700.1	ClCG10G012700.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane