ClCG10G011990.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G011990.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S ribosomal protein L44
Location	CG_Chr10: 25906489 .. 25908641 (-)
Sequence length	726
RNA-Seq Expression	ClCG10G011990.2
Synteny	ClCG10G011990.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACTCCTTCTTCACCCTTTTCCATTTTCTGCAATTTTAATGTCTCTTATTTCTTCTCAAGAGTCCCTCATGGGTGTACTTGTGTTCTACATCTATGATTTCTTTCACGATTTGTTCTGTTTGGTTGCCGTCAATTAGTTCTGTGATGGAGAAGGCCAATAGTTGTAGTTGCGTTTTGAAAATTTACGTTGAATTGAGAGCATTGGCCCTGTACTGTTTATGCCCTTCGTTTTCTATTGCGTGTTTTTTTTTTTTTTCTCCATATTATCACTTGATCTGGGACTGTGCTTATCAACTGGTTTATCTGTTGCACTCGAGCTTAGTTTGGCTTAGTTAGCGAGGTGAGAATGTAAGTTCTATGGGGCTGGTTGTAGAATAAACCATCTGAATCATCTGGCAGCTCGTGCTGGGATCATGTCGAATTGGATGTATTTTTGTTGCACGGACTGTAAGAGGAAAAATTTAAGGACTACTGACATTTGTAGCTCATGCAATCTGGGTCCTGGATTTAGTGAATGCATGATTGCCCAATTAAGTGAAATTTGTAGTGTCACTAAACCTTTTTGTTTTTTTGGATAAGAAACAATTTCATATTGATGGTATTAAATTATAAAGGGGAACCCCAATAAGACTAATTACAGAATGCCTCTCCAATTGGAGGTGAGGGAGGAATAACTGTAGTGATGGAAGAGGGGGGTGTCACTGAACTTTTGAACGAATGTTTCTTCCTAAATTGCTAAAAAGAAGGGATTTTTCACAAGGTAAACATTGCTCATTGATGAGTGGATTATAAATTCTGGAACTTTGATTACCATAAGTTCATTGATTGTCCATCCAAAAGAAGTTTTAAACCATGGAGTCGGAATGCTGCAGTGGGTTTGCAGTATTTGTGTTTTTTTTGTCATTACAGGTTGTATTGTCATGGTTTAAGATTTGATTTGTGGATTTGGTAATGGAAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGTAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGTTAGTAATTTTCTCACATCCAGTCAAATTCTTACTTTCTCCTTTTCCGAGGTGCCATTTAGATTAGAACTGAATTGAAACTCCTGAATTTCACAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACATGTATCCCAGCACCCAATCAAGGTTAGAATGCAAAGCAATTTATTATTTTCTAATTATATGACCTCTCTCTATTAAGTATTTTGTTAGTCTAATGCATTTTCCTAAAAAATCATTCAAGCCTATGGTGGTCTCATACTAAATATATAATGCTGTTGGTCCAAATAAAGCTAATCCATTTCCCTCCCCTTACAAGTAAATATCCATGTAACTGCTATGCTAGTGAAGACAGTTGATACTTGATTCTAGGTTTTAAATGCCTTTACCTTTGGGTAGTTTTGTTTTCTCCATTCTTGTGTGTACGGTTTCATAGTTGAGTATCGAATTGGCACTTGGTGCTGATGTTGCAATATTTGACGTAATTGTTGCAAGTCCAAATGAGAAACTCTAATTGTTAGTTATTATCTGGTGGATTTTGTGCGGTTCCCTCATCACATTTCTAAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAGACCCTTTGTCAGTTTTTATCTTTTCTCATTTCTTTTTCACAAGATTATTTGTTATTGGAGTTCTTGCACCATTACTCTGTGTTCAGCAATTAGTTCTACGTGCTGTAATGATACTGTTTAGCTGAGACTCTCATGTCTTAATTATTGAATTGCCAAAATTTTGATGCTCTTTGTTTGATTTATCTAGTCCTTTCTCATAGAAACTTGTCTGCATGAGGAATCGGTCAGTAATAGAATTAATCGATTGATTATTGTTAGATTCGTGAAAATTGTCTTCCAACTATTTCACGATAACGCAGATGAGGTACATATTTTGAGATCAAGGTTATTGTATTCTGTCTGA

mRNA sequence

ATGGTACTCCTTCTTCACCCTTTTCCATTTTCTGCAATTTTAATGTCTCTTATTTCTTCTCAAGAGTCCCTCATGGGTGTACTTGTGTTCTACATCTATGATTTCTTTCACGATTTGTTCTGTTTGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGTAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACATGTATCCCAGCACCCAATCAAGCTAATCCATTTCCCTCCCCTTACAAAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAGACCCTTTGTCAGTTTTTATCTTTTCTCATTTCTTTTTCACAAGATTATTTGTTATTGGAGTTCTTGCACCATTACTCTGTGTTCAGCAATTAGTTCTACGTGCTTCCTTTCTCATAGAAACTTGTCTGCATGAGGAATCGGTCAGTAATAGAATTAATCGATTGATTATTGTTAGATTCGTGAAAATTGTCTTCCAACTATTTCACGATAACGCAGATGAGGTACATATTTTGAGATCAAGGTTATTGTATTCTGTCTGA

Coding sequence (CDS)

ATGGTACTCCTTCTTCACCCTTTTCCATTTTCTGCAATTTTAATGTCTCTTATTTCTTCTCAAGAGTCCCTCATGGGTGTACTTGTGTTCTACATCTATGATTTCTTTCACGATTTGTTCTGTTTGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGTAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACATGTATCCCAGCACCCAATCAAGCTAATCCATTTCCCTCCCCTTACAAAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAGACCCTTTGTCAGTTTTTATCTTTTCTCATTTCTTTTTCACAAGATTATTTGTTATTGGAGTTCTTGCACCATTACTCTGTGTTCAGCAATTAGTTCTACGTGCTTCCTTTCTCATAGAAACTTGTCTGCATGAGGAATCGGTCAGTAATAGAATTAATCGATTGATTATTGTTAGATTCGTGAAAATTGTCTTCCAACTATTTCACGATAACGCAGATGAGGTACATATTTTGAGATCAAGGTTATTGTATTCTGTCTGA

Protein sequence

MVLLLHPFPFSAILMSLISSQESLMGVLVFYIYDFFHDLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKLIHFPPLTKMQALRNWWRQEGKGNFSFLDPLSVFIFSHFFFTRLFVIGVLAPLLCVQQLVLRASFLIETCLHEESVSNRINRLIIVRFVKIVFQLFHDNADEVHILRSRLLYSV

Homology

[Close]

BLAST of ClCG10G011990.2 vs. NCBI nr
Match: PHU17227.1 (60S ribosomal protein L44 [Capsicum chinense])

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-42
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 29  VFYIYDFFHDLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 88
           +FY+        CLVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQ
Sbjct: 16  LFYLLTQKSQSICLVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 75

Query: 89  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKLI 130
           SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIK++
Sbjct: 76  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKVL 116

[Close]

BLAST of ClCG10G011990.2 vs. NCBI nr
Match: KAG8080729.1 (hypothetical protein GUJ93_ZPchr0007g5290 [Zizania palustris])

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-41
Identity = 94/141 (66.67%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCK+KECRKHTLHKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKL------------IHFP---------------PL 156
           KAKTTKKIVL+LQCQ CKH SQH IK+            +H P                L
Sbjct: 61  KAKTTKKIVLKLQCQSCKHYSQHAIKVCCSYQHLFYILWLHSPIAILLFTCISPSVATLL 120

[Close]

BLAST of ClCG10G011990.2 vs. NCBI nr
Match: XP_028113736.1 (60S ribosomal protein L44-like [Camellia sinensis])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 5   LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 64

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKL 129
           KAKTTKKIVLRLQCQGCKHVSQHPIK+
Sbjct: 65  KAKTTKKIVLRLQCQGCKHVSQHPIKV 91

[Close]

BLAST of ClCG10G011990.2 vs. NCBI nr
Match: KAG6383768.1 (hypothetical protein SASPL_156461 [Salvia splendens])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-41
Identity = 88/103 (85.44%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK---LIHFPPLTKMQALR 142
           KAKTTKKIVLRLQCQGCKHVSQHPIK   L+H   L  +   R
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVCALLHASALMHLSPTR 103

[Close]

BLAST of ClCG10G011990.2 vs. NCBI nr
Match: KCW65063.1 (hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis] >KJB49985.1 hypothetical protein B456_008G148400 [Gossypium raimondii] >CAA2977523.1 60S ribosomal L44 [Olea europaea subsp. europaea])

HSP 1 Score: 178.7 bits (452), Expect = 5.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKLIHF 132
           KAKTTKKIVLRLQCQGCKHVSQHPIK+  F
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVQAF 90

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQGCKHVSQHPIK
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIK 86

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 5.2e-40
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKK+VLRL+C  CK   Q  +K
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKK+VLRL+C  CK   Q  +K
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-33
Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKK+VLRL+C  CK+  Q  +K
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLK 86

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy TrEMBL
Match: A0A2G3CET5 (60S ribosomal protein L44 OS=Capsicum chinense OX=80379 GN=BC332_12922 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 29  VFYIYDFFHDLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 88
           +FY+        CLVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQ
Sbjct: 16  LFYLLTQKSQSICLVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 75

Query: 89  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKLI 130
           SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIK++
Sbjct: 76  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKVL 116

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy TrEMBL
Match: A0A059BG29 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKLIHF 132
           KAKTTKKIVLRLQCQGCKHVSQHPIK+  F
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVQAF 90

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy TrEMBL
Match: A0A7J7CV40 (60S ribosomal protein L44-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G00826 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 38  DLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 97
           +L  +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 73  ELSTMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 132

Query: 98  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK 128
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK
Sbjct: 133 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK 162

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy TrEMBL
Match: A0A0D2U3F8 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G148400 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKLIHF 132
           KAKTTKKIVLRLQCQGCKHVSQHPIK+  F
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVQAF 90

[Close]

BLAST of ClCG10G011990.2 vs. ExPASy TrEMBL
Match: A0A059BHB1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-41
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKL 129
           KAKTTKKIVLRLQCQGCKHVSQHPIK+
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKV 87

[Close]

BLAST of ClCG10G011990.2 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of ClCG10G011990.2 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of ClCG10G011990.2 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

The following BLAST results are available for this feature:

BLAST of ClCG10G011990.2 vs. NCBI nr


Match Name	E-value	Identity	Description
PHU17227.1	4.1e-42	87.13	60S ribosomal protein L44 [Capsicum chinense]	[more]
KAG8080729.1	3.5e-41	66.67	hypothetical protein GUJ93_ZPchr0007g5290 [Zizania palustris]	[more]
XP_028113736.1	4.6e-41	98.85	60S ribosomal protein L44-like [Camellia sinensis]	[more]
KAG6383768.1	4.6e-41	85.44	hypothetical protein SASPL_156461 [Salvia splendens]	[more]
KCW65063.1	5.9e-41	95.56	hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis] >KJB49985.1 hypothetica...	[more]

BLAST of ClCG10G011990.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	1.3e-43	98.84	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	5.2e-40	90.70	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
P0CQ51	2.1e-33	79.07	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	2.1e-33	79.07	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
O59870	2.8e-33	77.91	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]

BLAST of ClCG10G011990.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G3CET5	2.0e-42	87.13	60S ribosomal protein L44 OS=Capsicum chinense OX=80379 GN=BC332_12922 PE=3 SV=1	[more]
A0A059BG29	2.9e-41	95.56	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV...	[more]
A0A7J7CV40	2.9e-41	95.56	60S ribosomal protein L44-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13...	[more]
A0A0D2U3F8	2.9e-41	95.56	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G148400 PE=3 ...	[more]
A0A059BHB1	3.8e-41	97.70	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV...	[more]

BLAST of ClCG10G011990.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	3.7e-41	90.70	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	3.7e-41	90.70	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	3.7e-41	90.70	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.80		coord: 42..139 e-value: 4.8E-42 score: 144.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..95
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 28..128
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 60..127 e-value: 7.6E-29 score: 100.0
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 28..128
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 104..115
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 43..127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G011990	ClCG10G011990	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G011990.2-exon	ClCG10G011990.2-exon-CG_Chr10:25906489..25906644	exon
ClCG10G011990.2-exon	ClCG10G011990.2-exon-CG_Chr10:25906728..25906891	exon
ClCG10G011990.2-exon	ClCG10G011990.2-exon-CG_Chr10:25907154..25907178	exon
ClCG10G011990.2-exon	ClCG10G011990.2-exon-CG_Chr10:25907325..25907399	exon
ClCG10G011990.2-exon	ClCG10G011990.2-exon-CG_Chr10:25907496..25907675	exon
ClCG10G011990.2-exon	ClCG10G011990.2-exon-CG_Chr10:25908516..25908641	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G011990.2-cds	ClCG10G011990.2-cds-CG_Chr10:25906489..25906644	CDS
ClCG10G011990.2-cds	ClCG10G011990.2-cds-CG_Chr10:25906728..25906891	CDS
ClCG10G011990.2-cds	ClCG10G011990.2-cds-CG_Chr10:25907154..25907178	CDS
ClCG10G011990.2-cds	ClCG10G011990.2-cds-CG_Chr10:25907325..25907399	CDS
ClCG10G011990.2-cds	ClCG10G011990.2-cds-CG_Chr10:25907496..25907675	CDS
ClCG10G011990.2-cds	ClCG10G011990.2-cds-CG_Chr10:25908516..25908641	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G011990.2	ClCG10G011990.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen