ClCG10G011530.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G011530.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 25242304 .. 25244583 (+)
Sequence length	777
RNA-Seq Expression	ClCG10G011530.1
Synteny	ClCG10G011530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATTGGGTACATGCACAGTTCGCATCCCAAAGTTTCTCGAAAGACACCTAAGCATGGCTTCTCAGCTCAAAACAAGGACGAAAAAGTGCGTAAGTGACAGTTCCAACCTCAGCTCGTCATACAGAGTAAACTCAAAGTGACATACATACTATTCCACAAATGACACAAGTTAAGTTAGCTATGTAGCATGCTTTTGATGTGCACAACCAAGTAAAACGAAATGAGAATTGGGTACATAAACAAAGTGACATCTCAAAATTTCATAAAGGACTTCTAAGCGTGGCCTCTCAGCTCAAAACGAAGACAAAAAATGCGTAAGTGACAGTTCCAACCTCAGATCGTCATACAAAGTGGATACAAAGTGACATATATATACTATTCCACTAATTACAAAATCAAAATCAATTCACTATCCTATCAACGAACACATTCCTTCCTCCGAAAACTAGAGAAGTGACAATAAAGTGAGAATCAAAAGACCGAACTTACCGAAATAGAAGAGCAACTAGGAAAGTAACCACAGGAACAATGTTAACCAATACACAAGTGAAAGTGAAGCCCTGAATTAAGAACACAAACAACAAACCAGTCAACAAATAAACGGACAGAAAAACATGTAATTGCTATTTGCAGTTTGAAATTTAATGAAGAATAGAGGCTGGACTCACCTGAGGATGGAGACCGAGAGGCTGGACTCACGAGAATGGAGAGGGAGAGCGAGAGGAGCTAGAGCGAGTGGAGAGCGAGAGCGAGAGGCGACAGGAGAGCGAGTGGAGAGGGAGAGCGAGAGGTGAGAGGAAGGCGAGTGGAGTGGGAGAGCGAGAGGTGAGAGGAAGGCGAGTGGAGCGGGAGAGCGAGAGGCGAGAGAAGAGCGAGTGGAGAGGGAGAGCGAGTGGAGAGGGAGAGCGAGAGGCGAGAGGACAGCGAGTGGAGAGGGAGAGCGAGAGGCGAGAGGAAAGCGAGACGCTAGGGAGACTGATAGGCGAGAGGAGAGCGAGACGCTGGAGAGACCTAGAGCGACAGAAGCTTCGATTGGAGAGGGAGACCGAGAGACGAGAGGACAGCGAGACGCCAGGGAGACCGAAAGGCTACTGGATGTCGACTGGAGAGGGAGACCGAGAGACGAGGGGAAAGCGACACTTCGGCAATGGTAGTCTAAGACGGGCATGAGGGAGGCCGTCGACGTGAGTTCGAAATAGTGAAGGAGATGCGACTGTGGAGAGGCGCGCCAAATCAAAATAACTTTATTAATATTCTTTAGGATTTTATATAAAACCCTAAATAATATTAATAAATTTTAAAATAATATATTTAAAAAGTGAGATAAAAAGTTAGATAATTGTATTTTACATAACTAATTTTGTGAAGAAATAAAAAAGATACGTTAAATAAATTAAATTGAAAAAAAAACTTGATCAATTTTTTGTGATATTAGCAAAATTTTAATGACTTGAAAAAATTGTCATAATTTAATGACTTTTAATTTTAGTCATAATTTGGTGACAAATAAAATTAGTCAAAATCCGAAAAGCACATTCGATGACTGTTTTTTTCAGTCATAAATCAATGACACGTAAAAACAGTCATGTATTCCGCCAAATCTGAAAATTTTTGTTTTTTCCCGCCAAAAACGCGTGATTTTGGATTTAATGATTCTTTTTTCACTTTCTCCTCTATTTTTGGCACTATTCATGAGTCATTGAATGTGTAATTTGTTGTAGTGATCATTTTGGGTTTTACTTATGAGATCTGCTTTTAAACATCTTGGTGTTTAGGTTATTTTTAACTTTATTGGCTATTGAAATGTTTTTTTTTTTTTTTTTTAATGGAGTACAATTTGTCTTCTAATAATCTAAAGAAAGTACATGAAAAATTGGAATTGGTATGTGTTGGAAAAGTTAGTATTTCTTTTATAAATAAAAAAAATTGGGTGGTTAAAAAAGGAAAGAAAAAGAAAACCACACAAAAAAAGGAATTAAAGAGAAAGAAAGAAAGGTTTAAGAAATTGTAACGAGAAAGAAAAAAAAGAAGAAAAATAGAAAGAGAACGATGAAGCAATTAAATGGATGGAAAAAAAAGAGGGGAAAGAAAGAAGAAGCCCATTGAATCCCTCGAGACCTCTCACAATTGAGAACCCACAACTCTCACAGTCCTCCTTCATCGATTGTCCGCCGCTCGTTCGCCTATCGTCTACCACTCGTTTGCCGGTCATCCACTGCTCATCCGACCATCAGAATCGAACAACCACACGTCCCTCGACCCAAAATACGCATGA

mRNA sequence

ATGAGAATTGGGTACATGCACAGTTCGCATCCCAAAGTTTCTCGAAAGACACCTAAGCATGGCTTCTCAGCTCAAAACAAGGACGAAAAAGTGCCTCAAAACGAAGACAAAAAATGCGTAAGTGACAGTTCCAACCTCAGATCGTCATACAAAGTGGATACAAAACCGAGAGGCTGGACTCACGAGAATGGAGAGGGAGAGCGAGAGGAGCTAGAGCGAGTGGAGAGCGAGAGCGAGAGGCGACAGGAGAGCGAGTGGAGAGGGAGAGCGAGAGGTGAGAGGAAGGCGAGTGGAGTGGGAGAGCGAGAGGTGAGAGGAAGGCGAGTGGAGCGGGAGAGCGAGAGGCGAGAGAAGAGCGAGTGGAGAGGGAGAGCGAGTGGAGAGGGAGAGCGAGAGGCGAGAGGACAGCGAGTGGAGAGGGAGAGCGAGAGGCGAGAGGAAAGCGAGACGCTAGGGAGACTGATAGGCGAGAGGAGAGCGAGACGCTGGAGAGACCTAGAGCGACAGAAGCTTCGATTGGAGAGGGAGACCGAGAGACGAGAGGACAGCGAGACGCCAGGGAGACCGAAAGGCTACTGGATGTCGACTGGAGAGGGAGACCGAGAGACGAGGGGAAAGCGACACTTCGGCAATGAACCCACAACTCTCACAGTCCTCCTTCATCGATTGTCCGCCGCTCGTTCGCCTATCGTCTACCACTCGTTTGCCGGTCATCCACTGCTCATCCGACCATCAGAATCGAACAACCACACGTCCCTCGACCCAAAATACGCATGA

Coding sequence (CDS)

ATGAGAATTGGGTACATGCACAGTTCGCATCCCAAAGTTTCTCGAAAGACACCTAAGCATGGCTTCTCAGCTCAAAACAAGGACGAAAAAGTGCCTCAAAACGAAGACAAAAAATGCGTAAGTGACAGTTCCAACCTCAGATCGTCATACAAAGTGGATACAAAACCGAGAGGCTGGACTCACGAGAATGGAGAGGGAGAGCGAGAGGAGCTAGAGCGAGTGGAGAGCGAGAGCGAGAGGCGACAGGAGAGCGAGTGGAGAGGGAGAGCGAGAGGTGAGAGGAAGGCGAGTGGAGTGGGAGAGCGAGAGGTGAGAGGAAGGCGAGTGGAGCGGGAGAGCGAGAGGCGAGAGAAGAGCGAGTGGAGAGGGAGAGCGAGTGGAGAGGGAGAGCGAGAGGCGAGAGGACAGCGAGTGGAGAGGGAGAGCGAGAGGCGAGAGGAAAGCGAGACGCTAGGGAGACTGATAGGCGAGAGGAGAGCGAGACGCTGGAGAGACCTAGAGCGACAGAAGCTTCGATTGGAGAGGGAGACCGAGAGACGAGAGGACAGCGAGACGCCAGGGAGACCGAAAGGCTACTGGATGTCGACTGGAGAGGGAGACCGAGAGACGAGGGGAAAGCGACACTTCGGCAATGAACCCACAACTCTCACAGTCCTCCTTCATCGATTGTCCGCCGCTCGTTCGCCTATCGTCTACCACTCGTTTGCCGGTCATCCACTGCTCATCCGACCATCAGAATCGAACAACCACACGTCCCTCGACCCAAAATACGCATGA

Protein sequence

MRIGYMHSSHPKVSRKTPKHGFSAQNKDEKVPQNEDKKCVSDSSNLRSSYKVDTKPRGWTHENGEGEREELERVESESERRQESEWRGRARGERKASGVGEREVRGRRVERESERREKSEWRGRASGEGEREARGQRVERESERREESETLGRLIGERRARRWRDLERQKLRLERETERREDSETPGRPKGYWMSTGEGDRETRGKRHFGNEPTTLTVLLHRLSAARSPIVYHSFAGHPLLIRPSESNNHTSLDPKYA

Homology

The following BLAST results are available for this feature:

BLAST of ClCG10G011530.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG10G011530.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG10G011530.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG10G011530.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 256..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..151

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G011530	ClCG10G011530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G011530.1-exon	ClCG10G011530.1-exon-CG_Chr10:25242304..25242397	exon
ClCG10G011530.1-exon	ClCG10G011530.1-exon-CG_Chr10:25242600..25242669	exon
ClCG10G011530.1-exon	ClCG10G011530.1-exon-CG_Chr10:25242989..25243458	exon
ClCG10G011530.1-exon	ClCG10G011530.1-exon-CG_Chr10:25244441..25244583	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G011530.1-cds	ClCG10G011530.1-cds-CG_Chr10:25242304..25242397	CDS
ClCG10G011530.1-cds	ClCG10G011530.1-cds-CG_Chr10:25242600..25242669	CDS
ClCG10G011530.1-cds	ClCG10G011530.1-cds-CG_Chr10:25242989..25243458	CDS
ClCG10G011530.1-cds	ClCG10G011530.1-cds-CG_Chr10:25244441..25244583	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G011530.1	ClCG10G011530.1-protein	polypeptide