ClCG10G007880.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G007880.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Cytochrom_C_asm domain-containing protein
Location	CG_Chr10: 12691728 .. 12692394 (-)
Sequence length	471
RNA-Seq Expression	ClCG10G007880.1
Synteny	ClCG10G007880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCTTCGCGAGCAAGGAGTGCCACGCACGAGCGAAGCAAAAACAAAGCCAAAGCAGGGGGAATTCTTTGTTAAGGGAAATCCTTTGATTGTGTATTGAATATAGATGCATGTCTTTCTTGTTCCACCAGCTAGGAGCAAATTCTCACATGTCTCTTTCGTTATTACAACCTTCTTTTTTTTATGTCAAAGACCAGAAGCTATGCACAAATTCTCATTGGATCTCAGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTAGTATTCTGTATGTACATGTTCCTGCGGCTTGGATGAGTATTCTTATTTATATCATTACGGCTATAAACACTTTCTTGTTCCTATTAACAAAAAGTTCCCTTTTTCTTCGCTCTTCCGAAACCGGTATAGAAATGGGTGCTTTTTTTACATCGTTTACTTTAGTGACTGGGGGTTTCGGGGAAGACCTATGTGAGGCACCTTTTGGGTGTGGGATGCTTGTTTAGTGCACTGTGTTTTCAAAAGCTTCCTTTCGAACCGACTTCTATTTCAATCCGTGTTAGACTGATTGATATACCAATAATCAAGTTTTCAGTCCACTAGTGGAATACATCGCATCAACTTGGGAGCATTAGCAGATCTG

mRNA sequence

ATGCCGCTTCGCGAGCAAGGAGTGCCACGCACGAGCGAAGCAAAAACAAAGCCAAAGCAGGGGGAATTCTTTGTTAAGGGAAATCCTTTGATTACCAGAAGCTATGCACAAATTCTCATTGGATCTCAGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTAGTATTCTGTATGTACATGTTCCTGCGGCTTGGATGAGTATTCTTATTTATATCATTACGGCTATAAACACTTTCTTGTTCCTATTAACAAAAAGTTCCCTTTTTCTTCGCTCTTCCGAAACCGGTATAGAAATGGGTGCTTTTTTTACATCGTTTACTTTAGTGACTGGGGGTTTCGGGGAAGACCTATGTGAGGCACCTTTTGGGTGTGGGATGCTTTCCACTAGTGGAATACATCGCATCAACTTGGGAGCATTAGCAGATCTG

Coding sequence (CDS)

ATGCCGCTTCGCGAGCAAGGAGTGCCACGCACGAGCGAAGCAAAAACAAAGCCAAAGCAGGGGGAATTCTTTGTTAAGGGAAATCCTTTGATTACCAGAAGCTATGCACAAATTCTCATTGGATCTCAGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTAGTATTCTGTATGTACATGTTCCTGCGGCTTGGATGAGTATTCTTATTTATATCATTACGGCTATAAACACTTTCTTGTTCCTATTAACAAAAAGTTCCCTTTTTCTTCGCTCTTCCGAAACCGGTATAGAAATGGGTGCTTTTTTTACATCGTTTACTTTAGTGACTGGGGGTTTCGGGGAAGACCTATGTGAGGCACCTTTTGGGTGTGGGATGCTTTCCACTAGTGGAATACATCGCATCAACTTGGGAGCATTAGCAGATCTG

Protein sequence

MPLREQGVPRTSEAKTKPKQGEFFVKGNPLITRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGEDLCEAPFGCGMLSTSGIHRINLGALADL

Homology

[Close]

BLAST of ClCG10G007880.1 vs. NCBI nr
Match: KJB09786.1 (hypothetical protein B456_001G165900 [Gossypium raimondii])

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-41
Identity = 107/147 (72.79%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MPLREQGVPRTSEAKTKPKQGEFFVKGNPLI--------------------TRSYAQILI 60
           MPLREQGVP TS AKT  KQGEF V GNPLI                    TRSYA+ILI
Sbjct: 1   MPLREQGVPWTSGAKT--KQGEFLVGGNPLILGQNDHMSVSLLQPFFLMSKTRSYAKILI 60

Query: 61  GSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKS 120
           GS+LFLTAMAI+LSLRVAPLDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK 
Sbjct: 61  GSRLFLTAMAIYLSLRVAPLDLQQGGNSRIPYVHVPAARMSILVYIATAINTFLFLLTKH 120

Query: 121 SLFLRSSETGIEMGAFFTSFTLVTGGF 128
            LFLRSS T IE+GAFFT FTLVTGGF
Sbjct: 121 PLFLRSSGTSIEIGAFFTLFTLVTGGF 145

[Close]

BLAST of ClCG10G007880.1 vs. NCBI nr
Match: CAB4074751.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-40
Identity = 94/110 (85.45%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 32  TRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAIN 91
           TRSYA+I IGS+LFLTAMAIHLSLRVAPLDLQQGGNS I YVHVPAA MSIL+YI TAIN
Sbjct: 15  TRSYAKIFIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRIPYVHVPAARMSILVYIATAIN 74

Query: 92  TFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGEDLCEAPFGCGML 142
           TFLFLLTK  LFLRS  TG EMGAF T FTLVTGGFGEDLC APFGCGML
Sbjct: 75  TFLFLLTKHPLFLRSFGTGTEMGAFSTLFTLVTGGFGEDLCGAPFGCGML 124

[Close]

BLAST of ClCG10G007880.1 vs. NCBI nr
Match: QGW53571.1 (cytochrome c biogenesis C [Peganum harmala] >QGW53578.1 cytochrome c biogenesis C [Peganum harmala])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-35
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 32  TRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAIN 91
           TRSYAQILIGS+LFLTAMAIHLSLRVAPLD QQGGNS ILYVHVPAA MSIL+YI TAIN
Sbjct: 15  TRSYAQILIGSRLFLTAMAIHLSLRVAPLDFQQGGNSRILYVHVPAARMSILVYIATAIN 74

Query: 92  TFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           TFLFLLTK  LFLRSS TGIEMGAFFT FTLVTGGF
Sbjct: 75  TFLFLLTKHPLFLRSSGTGIEMGAFFTLFTLVTGGF 110

[Close]

BLAST of ClCG10G007880.1 vs. NCBI nr
Match: YP_009913608.1 (cytochrome c biogenesis C [Luffa acutangula] >QLJ93005.1 cytochrome c biogenesis C [Luffa acutangula])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-35
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 32  TRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAIN 91
           TRSYAQILIGS+LFLTAMAIHLSLRVAPLDLQQGGNS ILYVHVPAA MSIL+YI TAIN
Sbjct: 15  TRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPAARMSILVYIATAIN 74

Query: 92  TFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           TFLFLLTK  LFLRSS TG EMGAFFT FTLVTGGF
Sbjct: 75  TFLFLLTKHPLFLRSSGTGTEMGAFFTLFTLVTGGF 110

[Close]

BLAST of ClCG10G007880.1 vs. NCBI nr
Match: XP_028802050.1 (uncharacterized protein LOC114757214 [Prosopis alba] >AQK77821.1 cytochrome c biogenesis C [Lophophytum mirabile subsp. bolivianum] >QXE45599.1 cytochrome c biogenesis C [Prosopis glandulosa])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-35
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 32  TRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAIN 91
           TRSYAQILIGS+LFLTAMAIHLSLRVAPLDLQQGGNS ILYVHVPAA MSIL+YI TAIN
Sbjct: 15  TRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPAARMSILVYIATAIN 74

Query: 92  TFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           TFLFLLTK  LFLRSS TG EMGAFFT FTLVTGGF
Sbjct: 75  TFLFLLTKHPLFLRSSGTGTEMGAFFTLFTLVTGGF 110

[Close]

BLAST of ClCG10G007880.1 vs. ExPASy Swiss-Prot
Match: P92527 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMC PE=2 SV=4)

HSP 1 Score: 151.8 bits (382), Expect = 6.6e-36
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 32  TRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAIN 91
           TRSYAQILIGS LFLTAMAI+LSL VAPLD QQGGNS ILYVHVP AWMSI++YI TAIN
Sbjct: 15  TRSYAQILIGSWLFLTAMAIYLSLGVAPLDFQQGGNSRILYVHVPVAWMSIIVYIATAIN 74

Query: 92  TFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           TFLFLLTK  L+L SS TGIEMGAFFT FTLVTGGF
Sbjct: 75  TFLFLLTKHPLYLCSSGTGIEMGAFFTLFTLVTGGF 110

[Close]

BLAST of ClCG10G007880.1 vs. ExPASy Swiss-Prot
Match: P38453 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMC PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 35  YAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFL 94
           YAQILIG   FLTAMAI+LS+ VAP D QQG N  I+YVHVPAAWMS+LIYI  AI++ L
Sbjct: 18  YAQILIGFCWFLTAMAIYLSIWVAPSDFQQGENYRIIYVHVPAAWMSLLIYIAMAISSVL 77

Query: 95  FLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           FLLTK  LF   S+T  ++GA FT FTLVTGGF
Sbjct: 78  FLLTKHPLFQLFSKTAAKIGALFTLFTLVTGGF 110

[Close]

BLAST of ClCG10G007880.1 vs. ExPASy TrEMBL
Match: A0A6N2KQ29 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS115015 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 105/128 (82.03%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MPLREQGVPRTSEAKTKPKQGEFFVKGNPL-ITRSYAQILIGSQLFLTAMAIHLSLRVAP 60
           M LREQGVPRTS AKT  KQ EFFV G     TRSY+QILIGS+LFLTAMAIHLSLRVAP
Sbjct: 438 MLLREQGVPRTSGAKT--KQWEFFVGGKSFDCTRSYSQILIGSRLFLTAMAIHLSLRVAP 497

Query: 61  LDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTS 120
           LDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TG EMGAFFT 
Sbjct: 498 LDLQQGGNSRIPYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAFFTL 557

Query: 121 FTLVTGGF 128
           FTLVTGGF
Sbjct: 558 FTLVTGGF 563

[Close]

BLAST of ClCG10G007880.1 vs. ExPASy TrEMBL
Match: A0A6N2L2A7 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS172095 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 105/128 (82.03%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MPLREQGVPRTSEAKTKPKQGEFFVKGNPL-ITRSYAQILIGSQLFLTAMAIHLSLRVAP 60
           M LREQGVPRTS AKT  KQ EFFV G     TRSY+QILIGS+LFLTAMAIHLSLRVAP
Sbjct: 419 MLLREQGVPRTSGAKT--KQWEFFVGGKSFDCTRSYSQILIGSRLFLTAMAIHLSLRVAP 478

Query: 61  LDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTS 120
           LDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TG EMGAFFT 
Sbjct: 479 LDLQQGGNSRIPYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAFFTL 538

Query: 121 FTLVTGGF 128
           FTLVTGGF
Sbjct: 539 FTLVTGGF 544

[Close]

BLAST of ClCG10G007880.1 vs. ExPASy TrEMBL
Match: A0A6N2NAW6 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480335 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 105/128 (82.03%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MPLREQGVPRTSEAKTKPKQGEFFVKGNPL-ITRSYAQILIGSQLFLTAMAIHLSLRVAP 60
           M LREQGVPRTS AKT  KQ EFFV G     TRSY+QILIGS+LFLTAMAIHLSLRVAP
Sbjct: 438 MLLREQGVPRTSGAKT--KQWEFFVGGKSFDCTRSYSQILIGSRLFLTAMAIHLSLRVAP 497

Query: 61  LDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTS 120
           LDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TG EMGAFFT 
Sbjct: 498 LDLQQGGNSRIPYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAFFTL 557

Query: 121 FTLVTGGF 128
           FTLVTGGF
Sbjct: 558 FTLVTGGF 563

[Close]

BLAST of ClCG10G007880.1 vs. ExPASy TrEMBL
Match: A0A6N2KGI6 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS80843 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 105/128 (82.03%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MPLREQGVPRTSEAKTKPKQGEFFVKGNPL-ITRSYAQILIGSQLFLTAMAIHLSLRVAP 60
           M LREQGVPRTS AKT  KQ EFFV G     TRSY+QILIGS+LFLTAMAIHLSLRVAP
Sbjct: 438 MLLREQGVPRTSGAKT--KQWEFFVGGKSFDCTRSYSQILIGSRLFLTAMAIHLSLRVAP 497

Query: 61  LDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTS 120
           LDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TG EMGAFFT 
Sbjct: 498 LDLQQGGNSRIPYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAFFTL 557

Query: 121 FTLVTGGF 128
           FTLVTGGF
Sbjct: 558 FTLVTGGF 563

[Close]

BLAST of ClCG10G007880.1 vs. ExPASy TrEMBL
Match: A0A6N2KNZ4 (Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS115922 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 105/128 (82.03%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MPLREQGVPRTSEAKTKPKQGEFFVKGNPL-ITRSYAQILIGSQLFLTAMAIHLSLRVAP 60
           M LREQGVPRTS AKT  KQ EFFV G     TRSY+QILIGS+LFLTAMAIHLSLRVAP
Sbjct: 398 MLLREQGVPRTSGAKT--KQWEFFVGGKSFDCTRSYSQILIGSRLFLTAMAIHLSLRVAP 457

Query: 61  LDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTS 120
           LDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TG EMGAFFT 
Sbjct: 458 LDLQQGGNSRIPYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAFFTL 517

Query: 121 FTLVTGGF 128
           FTLVTGGF
Sbjct: 518 FTLVTGGF 523

[Close]

BLAST of ClCG10G007880.1 vs. TAIR 10
Match: AT2G07681.1 (Cytochrome C assembly protein )

HSP 1 Score: 157.5 bits (397), Expect = 8.6e-39
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 30  LITRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITA 89
           L+TRSYAQILIGS LFLTAMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TA
Sbjct: 393 LVTRSYAQILIGSWLFLTAMAIHLSLGVAPLDLQQGGNSRILYVHVPAARMSIIVYIATA 452

Query: 90  INTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           INTFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGF
Sbjct: 453 INTFLFLLTKHPLYLRSSGTGIEMGAFFTLFTLVTGGF 490

[Close]

BLAST of ClCG10G007880.1 vs. TAIR 10
Match: AT2G07771.2 (Cytochrome C assembly protein )

HSP 1 Score: 154.8 bits (390), Expect = 5.6e-38
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 32  TRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAIN 91
           TRSYAQILIGS LFLTAMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TAIN
Sbjct: 15  TRSYAQILIGSWLFLTAMAIHLSLGVAPLDLQQGGNSRILYVHVPAARMSIIVYIATAIN 74

Query: 92  TFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           TFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGF
Sbjct: 75  TFLFLLTKHPLYLRSSGTGIEMGAFFTLFTLVTGGF 110

[Close]

BLAST of ClCG10G007880.1 vs. TAIR 10
Match: ATMG00900.1 (cytochrome C biogenesis 256 )

HSP 1 Score: 154.8 bits (390), Expect = 5.6e-38
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 32  TRSYAQILIGSQLFLTAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAIN 91
           TRSYAQILIGS LFLTAMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TAIN
Sbjct: 15  TRSYAQILIGSWLFLTAMAIHLSLGVAPLDLQQGGNSRILYVHVPAARMSIIVYIATAIN 74

Query: 92  TFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF 128
           TFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGF
Sbjct: 75  TFLFLLTKHPLYLRSSGTGIEMGAFFTLFTLVTGGF 110

The following BLAST results are available for this feature:

BLAST of ClCG10G007880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB09786.1	1.3e-41	72.79	hypothetical protein B456_001G165900 [Gossypium raimondii]	[more]
CAB4074751.1	1.9e-40	85.45	unnamed protein product [Lactuca saligna]	[more]
QGW53571.1	3.2e-35	89.58	cytochrome c biogenesis C [Peganum harmala] >QGW53578.1 cytochrome c biogenesis ...	[more]
YP_009913608.1	4.1e-35	89.58	cytochrome c biogenesis C [Luffa acutangula] >QLJ93005.1 cytochrome c biogenesis...	[more]
XP_028802050.1	4.1e-35	89.58	uncharacterized protein LOC114757214 [Prosopis alba] >AQK77821.1 cytochrome c bi...	[more]

BLAST of ClCG10G007880.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92527	6.6e-36	84.38	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsi...	[more]
P38453	2.6e-24	67.74	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia...	[more]

BLAST of ClCG10G007880.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2KQ29	2.2e-42	82.03	Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO...	[more]
A0A6N2L2A7	2.2e-42	82.03	Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO...	[more]
A0A6N2NAW6	2.2e-42	82.03	Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO...	[more]
A0A6N2KGI6	2.2e-42	82.03	Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO...	[more]
A0A6N2KNZ4	2.2e-42	82.03	Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686...	[more]

BLAST of ClCG10G007880.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07681.1	8.6e-39	86.73	Cytochrome C assembly protein	[more]
AT2G07771.2	5.6e-38	87.50	Cytochrome C assembly protein	[more]
ATMG00900.1	5.6e-38	87.50	cytochrome C biogenesis 256	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003557	Cytochrome c-type biogenesis protein CcmC	PRINTS	PR01386	CCMCBIOGNSIS	coord: 59..76 score: 62.22 coord: 76..96 score: 48.89 coord: 114..134 score: 41.9
IPR002541	Cytochrome c assembly protein	PFAM	PF01578	Cytochrom_C_asm	coord: 40..126 e-value: 9.8E-8 score: 32.0
None	No IPR available	PANTHER	PTHR30071:SF17	CYTOCHROME C ASSEMBLY PROTEIN-RELATED	coord: 31..127
IPR045062	Cytochrome c-type biogenesis protein CcsA/CcmC	PANTHER	PTHR30071	HEME EXPORTER PROTEIN C	coord: 31..127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G007880	ClCG10G007880	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G007880.1-exon	ClCG10G007880.1-exon-CG_Chr10:12691728..12691775	exon
ClCG10G007880.1-exon	ClCG10G007880.1-exon-CG_Chr10:12691871..12692200	exon
ClCG10G007880.1-exon	ClCG10G007880.1-exon-CG_Chr10:12692302..12692394	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G007880.1-cds	ClCG10G007880.1-cds-CG_Chr10:12691728..12691775	CDS
ClCG10G007880.1-cds	ClCG10G007880.1-cds-CG_Chr10:12691871..12692200	CDS
ClCG10G007880.1-cds	ClCG10G007880.1-cds-CG_Chr10:12692302..12692394	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G007880.1	ClCG10G007880.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
molecular_function	GO:0020037	heme binding
molecular_function	GO:0015232	heme transmembrane transporter activity