ClCG09G015830.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G015830.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr09: 30742695 .. 30744545 (+)
Sequence length	417
RNA-Seq Expression	ClCG09G015830.1
Synteny	ClCG09G015830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAAGGAAGAAGGAAACGGACCGAAGCCGGTGCAGTGAACAGTGACCAACTGTCCGGCGGTCGGTTTGGGGCCGGTTCCAGATCTCAGCAATTCCTTCTCTACGCCCATTGTTTCTTTGTCTTTCGAAACTCTCTATGTGCTTTTGTTGGGTTAAGGGGCCTTAGGGTTTATGTACTTTCACAGCTTAATTTCATTTTAGTTAATGATGATTGGATCAACGACACCGGAACTCTTTTTTTCCTTTTTTTTCTTTTTTTTACAACAATATATATATATATATTTTTTTTTAGGATTCCAACTTCTAATCTTTTAATAAGTAAGTTGAAATGTATTCATATTAATAAAAAAAATGTTAAAATATTTAAATTATAATAGTAAAAAAAATCATAAAAACATTTATATTAACATATAAAGATTTCACCATTTTAAGCAAGTTAAAATCTTTTAAAAAAAGAATTGTCTATTAATTTGGAGTGCGTTTGGTTTAAATTTAAAATGTAATTTGATGGTCTTTGAATTTTTTCAAAATAGATTTATGAGTATTTTTTATTAATATTTCAAATCTTGACATGGCATTTAAACTATATATTCTCTCTCATTCCTCATCTCCCATCCCTCTACCTGCCATCTTCTTCCTTTTAACTTTTCCTTTTGCAAAATATTGGGTTAAAGAAATTTTTTTTGGAAAAGACCCTATTTTAAAGTTTTCAACTCGACTCTTAAATTTTTTATTAGGTCATCGAATTATTATTATTATTCTTTTTTCTAAATTAGTCGACAAAATAAATAACTAGCAACTAGAAAAATGGCTAAACACATTAGACTTCGCAAAATGGTTAAACATCTAAATGGCATTTTGAAATTGGGCTTGGACGAAAATATTCGGTGTAGATCTTCCCCTTTTAACTCAACTAAAAGATTTGAAAAGAGAAATTATAAAAAAATGTTTACATAAAATATCCAATGTATGGATATGGCTAAAATGTTACTAATATTGCAAAAGGAGAGTGAAGATTTCTTTTTCCAATTATACCCTTATTTAGTTGTATGTCTATTTATTTACATATATACCATCACAACATAAATCCAATTATTTTGGTTAGATGTAAGAGATTTTTAAGTGTATTTGAATAATATATATCCTCTATGACCAAAAACCAACATAATACTGCACCCAAATTTCTAAGTATGTTTTGAAAAAATTAATTATCCTAAATTTTTTGGTGTTAAATTGAGTTTGGAAAAAAAAAAAAAAAGGAAGTATTGGGTTAAATGAATCTAATTTGGGGGTTGGGTTGGTGAGATTTACTGGGAGAAGAAGAGATTTTATTATTATTCTCTAAGAGGAATTAGGATTTGATGTGGTGTTATTTAGGGCATAGGGTCTAATCGTGTTGCGGGTAATTAAAGGAAAAAAAAACAGCCTCTATCTCTTGGCAGTCTCTCTCTCGCGGCAGTCTCACTCGGCAGCCTTTCGTCCCCGATCCAGTGCCGCTGCCAGTCGTTGTGCCTTAGCACTACCGGTCGAGTCGTCATCGTCTCCTCCAAATCACACCACGGGGCTTTGTTCGCACCAGTCCACACGCTGCTCCGCCGTCGATGTTCGTCGATTGTTGATGTCTGTCCGCCCTCGTCCTACCGTCCAGTCCCGCCATCGTCACCGCAATCAAAGAGACGTTGTTGCTACCGATTCGTCTGGGTAAGGTTGTGGCGTTTTCTTTTGGAGTTTCTTGTTGGATCTTGGTTACTTGTTGAATATTGGGTCAATTTTTTTAATGTGTCTCAGTTTGGAGCTTTGACCCGTCAGTTTTGGAGGAGTCTTGGAGCCGAAAACAGGCTGTTTAG

mRNA sequence

ATGGGTAAAGGAAGAAGGAAACGGACCGAAGCCGGTGCAGTGAACAGTGACCAACTGTCCGGCGGTCGGTTTGGGGCCGGTTCCAGATCTCAGCAATTCCTTCTCTACGCCCATTGTTTCTTTTCTCACTCGGCAGCCTTTCGTCCCCGATCCAGTGCCGCTGCCAGTCGTTGTGCCTTAGCACTACCGGTCGAGTCGTCATCGTCTCCTCCAAATCACACCACGGGGCTTTGTTCGCACCAGTCCACACGCTGCTCCGCCGTCGATGTTCGTCGATTGTTGATGTCTGTCCGCCCTCGTCCTACCGTCCAGTCCCGCCATCGTCACCGCAATCAAAGAGACGTTGTTGCTACCGATTCGTCTGGCTTTGACCCGTCAGTTTTGGAGGAGTCTTGGAGCCGAAAACAGGCTGTTTAG

Coding sequence (CDS)

ATGGGTAAAGGAAGAAGGAAACGGACCGAAGCCGGTGCAGTGAACAGTGACCAACTGTCCGGCGGTCGGTTTGGGGCCGGTTCCAGATCTCAGCAATTCCTTCTCTACGCCCATTGTTTCTTTTCTCACTCGGCAGCCTTTCGTCCCCGATCCAGTGCCGCTGCCAGTCGTTGTGCCTTAGCACTACCGGTCGAGTCGTCATCGTCTCCTCCAAATCACACCACGGGGCTTTGTTCGCACCAGTCCACACGCTGCTCCGCCGTCGATGTTCGTCGATTGTTGATGTCTGTCCGCCCTCGTCCTACCGTCCAGTCCCGCCATCGTCACCGCAATCAAAGAGACGTTGTTGCTACCGATTCGTCTGGCTTTGACCCGTCAGTTTTGGAGGAGTCTTGGAGCCGAAAACAGGCTGTTTAG

Protein sequence

MGKGRRKRTEAGAVNSDQLSGGRFGAGSRSQQFLLYAHCFFSHSAAFRPRSSAAASRCALALPVESSSSPPNHTTGLCSHQSTRCSAVDVRRLLMSVRPRPTVQSRHRHRNQRDVVATDSSGFDPSVLEESWSRKQAV

Homology

The following BLAST results are available for this feature:

BLAST of ClCG09G015830.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG09G015830.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG09G015830.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG09G015830.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG09G015830	ClCG09G015830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG09G015830.1-exon	ClCG09G015830.1-exon-CG_Chr09:30742695..30742817	exon
ClCG09G015830.1-exon	ClCG09G015830.1-exon-CG_Chr09:30744158..30744399	exon
ClCG09G015830.1-exon	ClCG09G015830.1-exon-CG_Chr09:30744494..30744545	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG09G015830.1-cds	ClCG09G015830.1-cds-CG_Chr09:30742695..30742817	CDS
ClCG09G015830.1-cds	ClCG09G015830.1-cds-CG_Chr09:30744158..30744399	CDS
ClCG09G015830.1-cds	ClCG09G015830.1-cds-CG_Chr09:30744494..30744545	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG09G015830.1	ClCG09G015830.1-protein	polypeptide