ClCG06G011910.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G011910.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Serine-rich protein-related
Location	CG_Chr06: 25027235 .. 25027573 (-)
Sequence length	339
RNA-Seq Expression	ClCG06G011910.1
Synteny	ClCG06G011910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAAATATGGATCCTCCAATCCGAAATTGCAAAGCATCGCCGGTTCAAGGAAGTGTCTTTGTTCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCGCAAGGTCTCCTCCGCTAGGTCGTCTTCATCCATTTCCGCCATTACCACTGCGCAATTGGAGCTTGCGATGTTCGCGAAGGCGAATGCGTTGAGAGCGTTTCTTCTGCAGATGATTAAGCCGTCGAGTAACGATCTACAACGGCGAAGGAATTTTCATCCTAGACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGACTGTTTCTTGA

mRNA sequence

ATGGCGTCGAAATATGGATCCTCCAATCCGAAATTGCAAAGCATCGCCGGTTCAAGGAAGTGTCTTTGTTCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCGCAAGGTCTCCTCCGCTAGGTCGTCTTCATCCATTTCCGCCATTACCACTGCGCAATTGGAGCTTGCGATGTTCGCGAAGGCGAATGCGTTGAGAGCGTTTCTTCTGCAGATGATTAAGCCGTCGAGTAACGATCTACAACGGCGAAGGAATTTTCATCCTAGACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGACTGTTTCTTGA

Coding sequence (CDS)

ATGGCGTCGAAATATGGATCCTCCAATCCGAAATTGCAAAGCATCGCCGGTTCAAGGAAGTGTCTTTGTTCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCGCAAGGTCTCCTCCGCTAGGTCGTCTTCATCCATTTCCGCCATTACCACTGCGCAATTGGAGCTTGCGATGTTCGCGAAGGCGAATGCGTTGAGAGCGTTTCTTCTGCAGATGATTAAGCCGTCGAGTAACGATCTACAACGGCGAAGGAATTTTCATCCTAGACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGACTGTTTCTTGA

Protein sequence

MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQLELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS

Homology

[Close]

BLAST of ClCG06G011910.1 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 95/112 (84.82%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASK GSSNPKLQSI GSRKCLCSPTTHPGSFRCS HRNRRKVS+  SSSSI+AITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           +L M AKANALR+FLLQ+I PSS DLQRRRNF P+PSRFCLMNNHGTGL VS
Sbjct: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothetical protein SDJN02_14503, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASK GSSNPKLQSI GSRKCLCSPTTHPGSFRCS HRNRRKVS+  SSSSI+AITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           +L M AKANALR+FL Q+I PSS DLQRRRNF P+PSRFCLMNNHGTGL VS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothetical protein SDJN02_15476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 9.5e-42
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+K  S N KLQS+  SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSI+AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           EL +FAKANA+RAFLL +I+PSSNDLQRRRNFHPRPSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. NCBI nr
Match: XP_023003805.1 (uncharacterized protein LOC111497277 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+K  S+N KLQS+  SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSISAIT+AQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           EL +FAKANA+RAFLL +I+PSSNDLQRRRNF PRPSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. NCBI nr
Match: XP_023530962.1 (uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+K  S N KLQS+  SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSI+AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           EL ++AKANA+RAFLL +I+PSSNDLQRRRNFHP PSRFCLMN HGTGL VS
Sbjct: 61  ELTVYAKANAVRAFLLHIIRPSSNDLQRRRNFHPSPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. ExPASy TrEMBL
Match: A0A6J1E1K3 (uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC111429944 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASK GSSNPKLQSI GSRKCLCSPTTHPGSFRCS HRNRRKVS+  SSSSI+AITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           +L M AKANALR+FL Q+I PSS DLQRRRNF P+PSRFCLMNNHGTGL VS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. ExPASy TrEMBL
Match: A0A6J1EG01 (uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC111433980 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.6e-42
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+K  S N KLQS+  SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSI+AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           EL +FAKANA+RAFLL +I+PSSNDLQRRRNFHPRPSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. ExPASy TrEMBL
Match: A0A6J1KSU0 (uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+K  S+N KLQS+  SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSISAIT+AQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           EL +FAKANA+RAFLL +I+PSSNDLQRRRNF PRPSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of ClCG06G011910.1 vs. ExPASy TrEMBL
Match: A0A0A0LYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 90/113 (79.65%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSAR-SSSSISAITTAQ 60
           MASK GSS  K  +   SRKCLCSPTTHPGSFRCSFHRNR K+SS+R SSSS+S ITTA 
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           LEL   AKANALR+FLLQMIKPSSNDLQRRRNFHPRPSRFCLMN+H TGL VS
Sbjct: 61  LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

[Close]

BLAST of ClCG06G011910.1 vs. ExPASy TrEMBL
Match: A0A5A7U6S1 (Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25870G00010 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 90/112 (80.36%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASK GSS  K  S AGSRKCLCSPTTHPGSFRCSFHR R K+SS RSSSS      A+L
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS------AEL 60

Query: 61  ELAMFAKANALRAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNNHGTGLTVS 113
           EL   AKANALRAFLLQMIKPSSND+QRRRNFHPRPSRFCLMN+HGTGLTVS
Sbjct: 61  EL---AKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

[Close]

BLAST of ClCG06G011910.1 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQLELAMFAKANAL------ 77
           SR+C+CSPTTHPGSFRCS H+N   V++     + S  TT  L +   A  N+L      
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN---VANPHGQGTAS-YTTNGLNMRRSAMTNSLVRIGGV 179

Query: 78  -----RAFLLQMIKPSSNDLQRRRNFHPRPSRFCLM 103
                R  L  +I+PSS+ L+RR  + PRPSR  +M
Sbjct: 180 EGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

[Close]

BLAST of ClCG06G011910.1 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQLELAMFAKANAL------- 78
           R+C+CSPTTHPGSFRCS H+N   V++     + S  TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN---VANPHGQGTAS-YTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMN 104
               R  L  +I+PSS+ L+RR  + PR SR   M+
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of ClCG06G011910.1 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQLELAMFAKANAL------- 78
           R+C+CSPTTHPGSFRCS H+N   V++     + S  TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN---VANPHGQGTAS-YTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RAFLLQMIKPSSNDLQRRRNFHPRPSRFCLMN 104
               R  L  +I+PSS+ L+RR  + PR SR   M+
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of ClCG06G011910.1 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 41/102 (40.20%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSFHRN-RRKVSSARSSSSI--------SAITTAQLELAMFAKAN 78
           RKCLCSPTTHPGSFRCSFHR    + S   +SS++        +      L L   A  N
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 79  AL------------RAFLLQMIKPSSNDLQRRRNFHPRPSRF 100
           +L            R+    + KPSS    RR  F PR SRF
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of ClCG06G011910.1 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 9.9e-05
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 0


Query: 2  ASKYGSSNPKLQSIAGSRKCLCSPTTHPGSFRCSFHRN 40
          A + GS     Q+      CLCSPTTHPGSFRC  HR+
Sbjct: 25 AVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

The following BLAST results are available for this feature:

BLAST of ClCG06G011910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515429.1	4.6e-44	84.82	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_022921799.1	2.3e-43	83.93	uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothet...	[more]
XP_022927032.1	9.5e-42	80.36	uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothet...	[more]
XP_023003805.1	3.6e-41	80.36	uncharacterized protein LOC111497277 [Cucurbita maxima]	[more]
XP_023530962.1	1.0e-40	78.57	uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG06G011910.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G011910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1K3	1.1e-43	83.93	uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1EG01	4.6e-42	80.36	uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A6J1KSU0	1.7e-41	80.36	uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277...	[more]
A0A0A0LYY6	1.4e-38	79.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
A0A5A7U6S1	2.4e-38	80.36	Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of ClCG06G011910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	1.4e-11	42.71	serine-rich protein-related	[more]
AT5G25280.1	6.0e-10	40.63	serine-rich protein-related	[more]
AT5G25280.2	6.0e-10	40.63	serine-rich protein-related	[more]
AT5G20370.1	1.5e-08	40.20	serine-rich protein-related	[more]
AT1G67910.1	9.9e-05	52.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 13..106
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 13..106

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG06G011910	ClCG06G011910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG06G011910.1-exon	ClCG06G011910.1-exon-CG_Chr06:25027235..25027573	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG06G011910.1-cds	ClCG06G011910.1-cds-CG_Chr06:25027235..25027573	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG06G011910.1	ClCG06G011910.1-protein	polypeptide