ClCG02G012010.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G012010.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DUF1279 domain-containing protein
Location	CG_Chr02: 25245661 .. 25246101 (+)
Sequence length	441
RNA-Seq Expression	ClCG02G012010.1
Synteny	ClCG02G012010.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGAAAAGTCGCGATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGTCTCTATGTCGCCATCAAGAATAACGTCGATGTTGAATCGCTACTCGACAAGTTACACATGGATGGATTCTTTTCCAAAGATCAGCCGCAAACAAGTCCCTCCGAAATCACATCGTCCGTAGATGACGGATTTATGAAAGAAGAAAGGCCTGCGACGTCGGAAATTCAATCGACGAGGAATCGTACCGCCGAGCTTGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGCAACAAGGCGTTGCTGCCTATTCGGATTCCAATAACGATTGCGCTAACGCCGCCGATTGCGAGGCTGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

mRNA sequence

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGAAAAGTCGCGATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGTCTCTATGTCGCCATCAAGAATAACGTCGATGTTGAATCGCTACTCGACAAGTTACACATGGATGGATTCTTTTCCAAAGATCAGCCGCAAACAAGTCCCTCCGAAATCACATCGTCCGTAGATGACGGATTTATGAAAGAAGAAAGGCCTGCGACGTCGGAAATTCAATCGACGAGGAATCGTACCGCCGAGCTTGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGCAACAAGGCGTTGCTGCCTATTCGGATTCCAATAACGATTGCGCTAACGCCGCCGATTGCGAGGCTGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Coding sequence (CDS)

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGAAAAGTCGCGATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGTCTCTATGTCGCCATCAAGAATAACGTCGATGTTGAATCGCTACTCGACAAGTTACACATGGATGGATTCTTTTCCAAAGATCAGCCGCAAACAAGTCCCTCCGAAATCACATCGTCCGTAGATGACGGATTTATGAAAGAAGAAAGGCCTGCGACGTCGGAAATTCAATCGACGAGGAATCGTACCGCCGAGCTTGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGCAACAAGGCGTTGCTGCCTATTCGGATTCCAATAACGATTGCGCTAACGCCGCCGATTGCGAGGCTGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Protein sequence

MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFSKDQPQTSPSEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLPIRIPITIALTPPIARLLARRGIMRSG

Homology

[Close]

BLAST of ClCG02G012010.1 vs. NCBI nr
Match: XP_038902628.1 (uncharacterized protein LOC120089278 [Benincasa hispida])

HSP 1 Score: 265.0 bits (676), Expect = 3.8e-67
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLP 120
           KDQPQT+PSEITSSVDDGFM EERPA SEIQSTRNRTAELAASTGGALALAVLCNKALLP
Sbjct: 61  KDQPQTTPSEITSSVDDGFMNEERPA-SEIQSTRNRTAELAASTGGALALAVLCNKALLP 120

Query: 121 IRIPITIALTPPIARLLARRGIMRSG 147
           IRIPITIALTPPIARLLARRGIMRSG
Sbjct: 121 IRIPITIALTPPIARLLARRGIMRSG 145

[Close]

BLAST of ClCG02G012010.1 vs. NCBI nr
Match: XP_008457709.1 (PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo] >KAA0045747.1 uncharacterized protein E6C27_scaffold243G002670 [Cucumis melo var. makuwa] >TYJ99535.1 uncharacterized protein E5676_scaffold123G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 9.7e-63
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           M+FFTGGGRFRELLKKYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD FFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLP 120
           KDQPQT+PSE++SSVDDGF+ EER A SEIQ TRNRTAELAASTGGALALAVLCNKALLP
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSA-SEIQPTRNRTAELAASTGGALALAVLCNKALLP 120

Query: 121 IRIPITIALTPPIARLLARRGIMRSG 147
           IRIPITIALTPPIARLLARRGI+RSG
Sbjct: 121 IRIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of ClCG02G012010.1 vs. NCBI nr
Match: XP_004147050.1 (uncharacterized protein LOC101221163 [Cucumis sativus] >KGN61943.1 hypothetical protein Csa_006287 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           M+FFTGGGRFRELLKKYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD FFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLP 120
           KDQPQ +PSE TSSVDDGFM EER A SEIQ TRNRTAELAASTGGALALAVLCNKALLP
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSA-SEIQPTRNRTAELAASTGGALALAVLCNKALLP 120

Query: 121 IRIPITIALTPPIARLLARRGIMRSG 147
           IRIPITIALTPPIARLLARRGI+RSG
Sbjct: 121 IRIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of ClCG02G012010.1 vs. NCBI nr
Match: XP_023533856.1 (uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62
Identity = 138/153 (90.20%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGF S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQST-------RNRTAELAASTGGALALAVL 120
           KD PQTSPSEITSSVDDGF+ EERP TSEIQST       RNRTAELAASTGGALALAVL
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERP-TSEIQSTVMEEPRKRNRTAELAASTGGALALAVL 120

Query: 121 CNKALLPIRIPITIALTPPIARLLARRGIMRSG 147
           CNKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 CNKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of ClCG02G012010.1 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothetical protein SDJN02_11032, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-62
Identity = 138/153 (90.20%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGF S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQST-------RNRTAELAASTGGALALAVL 120
           KD PQTSPSEITSSVDDGF+ EERP TS IQST       RNRTAELAASTGGALALAVL
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERP-TSGIQSTVMEEPRKRNRTAELAASTGGALALAVL 120

Query: 121 CNKALLPIRIPITIALTPPIARLLARRGIMRSG 147
           CNKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 CNKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of ClCG02G012010.1 vs. ExPASy TrEMBL
Match: A0A5A7TV59 (DUF1279 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001030 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.7e-63
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           M+FFTGGGRFRELLKKYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD FFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLP 120
           KDQPQT+PSE++SSVDDGF+ EER A SEIQ TRNRTAELAASTGGALALAVLCNKALLP
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSA-SEIQPTRNRTAELAASTGGALALAVLCNKALLP 120

Query: 121 IRIPITIALTPPIARLLARRGIMRSG 147
           IRIPITIALTPPIARLLARRGI+RSG
Sbjct: 121 IRIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of ClCG02G012010.1 vs. ExPASy TrEMBL
Match: A0A1S3C646 (uncharacterized protein LOC103497342 OS=Cucumis melo OX=3656 GN=LOC103497342 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.7e-63
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           M+FFTGGGRFRELLKKYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD FFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLP 120
           KDQPQT+PSE++SSVDDGF+ EER A SEIQ TRNRTAELAASTGGALALAVLCNKALLP
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSA-SEIQPTRNRTAELAASTGGALALAVLCNKALLP 120

Query: 121 IRIPITIALTPPIARLLARRGIMRSG 147
           IRIPITIALTPPIARLLARRGI+RSG
Sbjct: 121 IRIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of ClCG02G012010.1 vs. ExPASy TrEMBL
Match: A0A0A0LJH5 (DUF1279 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270860 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.0e-63
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           M+FFTGGGRFRELLKKYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD FFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLP 120
           KDQPQ +PSE TSSVDDGFM EER A SEIQ TRNRTAELAASTGGALALAVLCNKALLP
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSA-SEIQPTRNRTAELAASTGGALALAVLCNKALLP 120

Query: 121 IRIPITIALTPPIARLLARRGIMRSG 147
           IRIPITIALTPPIARLLARRGI+RSG
Sbjct: 121 IRIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of ClCG02G012010.1 vs. ExPASy TrEMBL
Match: A0A6J1G6W3 (uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC111451320 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.3e-62
Identity = 138/153 (90.20%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGF S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQST-------RNRTAELAASTGGALALAVL 120
           KD PQTSPSEITSSVDDGF+ EERP TS IQST       RNRTAELAASTGGALALAVL
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERP-TSGIQSTVMEEPRKRNRTAELAASTGGALALAVL 120

Query: 121 CNKALLPIRIPITIALTPPIARLLARRGIMRSG 147
           CNKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 CNKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of ClCG02G012010.1 vs. ExPASy TrEMBL
Match: A0A6J1I2F7 (uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.8e-62
Identity = 138/153 (90.20%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGF S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQTSPSEITSSVDDGFMKEERPATSEIQST-------RNRTAELAASTGGALALAVL 120
           KD PQTSPSEIT SVDDGF+ EERP TS IQST       RNRTAELAASTGGALALAVL
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERP-TSGIQSTVVEEPRKRNRTAELAASTGGALALAVL 120

Query: 121 CNKALLPIRIPITIALTPPIARLLARRGIMRSG 147
           CNKALLPIRIPITIALTPPIARLLARRGIMRSG
Sbjct: 121 CNKALLPIRIPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of ClCG02G012010.1 vs. TAIR 10
Match: AT2G20940.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-33
Identity = 79/138 (57.25%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 9   RFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFSKDQPQTSP 68
           R +E++KKYGKVA+GVHFSVS  SI+G Y+AIKNNVDVESLL+K  +  F SK+ P  S 
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENPNPSL 63

Query: 69  SEITSSVDDGFMKEERPATSEIQSTRNRTAELAASTGGALALAVLCNKALLPIRIPITIA 128
                   D  ++E+   TS+     N+T +LA S GGALALAVLCNKAL PIR+PIT+A
Sbjct: 64  --------DLKLEEQGSVTSD-----NKTKQLAKSAGGALALAVLCNKALFPIRVPITMA 123

Query: 129 LTPPIARLLARRGIMRSG 147
           LTPPIAR L +R I+++G
Sbjct: 124 LTPPIARFLRQRKILKTG 128

The following BLAST results are available for this feature:

BLAST of ClCG02G012010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902628.1	3.8e-67	97.26	uncharacterized protein LOC120089278 [Benincasa hispida]	[more]
XP_008457709.1	9.7e-63	91.78	PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo] >KAA0045747.1 unc...	[more]
XP_004147050.1	1.7e-62	92.47	uncharacterized protein LOC101221163 [Cucumis sativus] >KGN61943.1 hypothetical ...	[more]
XP_023533856.1	1.7e-62	90.20	uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo]	[more]
XP_022947464.1	4.8e-62	90.20	uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothet...	[more]

BLAST of ClCG02G012010.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G012010.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV59	4.7e-63	91.78	DUF1279 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C646	4.7e-63	91.78	uncharacterized protein LOC103497342 OS=Cucumis melo OX=3656 GN=LOC103497342 PE=...	[more]
A0A0A0LJH5	8.0e-63	92.47	DUF1279 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270860 PE=...	[more]
A0A6J1G6W3	2.3e-62	90.20	uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1I2F7	6.8e-62	90.20	uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888...	[more]

BLAST of ClCG02G012010.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20940.1	1.7e-33	57.25	Protein of unknown function (DUF1279)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009688	Protein FAM210A/B-like domain	PFAM	PF06916	DUF1279	coord: 9..131 e-value: 2.0E-26 score: 92.4
None	No IPR available	PANTHER	PTHR21377	UNCHARACTERIZED	coord: 8..144
None	No IPR available	PANTHER	PTHR21377:SF0	PROTEIN FAM210B, MITOCHONDRIAL	coord: 8..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G012010	ClCG02G012010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G012010.1-exon	ClCG02G012010.1-exon-CG_Chr02:25245661..25246101	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G012010.1-cds	ClCG02G012010.1-cds-CG_Chr02:25245661..25246101	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G012010.1	ClCG02G012010.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion