ClCG02G006720.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G006720.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	40S ribosomal protein S29
Location	CG_Chr02: 7721634 .. 7723381 (+)
Sequence length	655
RNA-Seq Expression	ClCG02G006720.1
Synteny	ClCG02G006720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTTCCGTACACGCTAGGGTTTTGTCTCAGCACTCCACTATAAATACCTACTTTTTCTTCTAGTTGGTTCTTCAGAAAGCATTTGCCTATTCCAAGGATTTTCGAAGCCCTAACGAGCTCATCAGATTTCCTTCTCGCAAGAAATCCAAACATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGGTAACTTGCTTTCTTTTCTCCTTTTCTCTTTTCAGATGATTCCGATTTGATTTAACTGATCTTGTGATATACGATTCATTTTGCTCGAAAAAAATGGTATTTATTTCGATTACTGGGTTGGAACCCGGGGTTTTGTTAATCTGATGGGGTATTTTAACGTGAGAGAAAAATTATCTGATTGGTTTTGACTTTTGAGCTGGATACAGTTCAAAGAAGTATTTTTTTTTTCTCTTAATAATGTTTCTTTGATGTATGGAAAATCGCTTAAAGATAGATTTGGTGGCTATCTTCAATGGCGGGAAATTAAGTGAAATTTTCGGATAGTTCCCAAATGTTCTTCTAGTTATTTGTGATGTTTGTTGACATTGATTAGGCAATCGATTCTCGGTTCATTTGGCATGAGAATTTTAGTGGATTTGCCTAAGAACCCTTTTGGCTATATGCCCATGATCAGATCGTTTTCTGTCTAAGCTATTCTGGGAAATAGTTGTAATGGTGTTGAAACGGTAAGGTCCTAATAACTGCTCAGTAACCCCTTATGTTGTTTGTGGCTATTGGTTGAACTAAAATATAAGTTCATTATGTTGAGCCTGACTATTGGATGATGGGATGAATTGAGTGATTGATAAGATGCTGTATAAGTTTCCATGATCGGATCGTTTTTTGTCTAAATTATTCTGGGTCATAGTTGTTATGTTGATGAAACGATAAGAAGTTCTTAGTAATGGCTCATGAATCCCTTATGTTGTTTGTGGCTATTGGTTGAAATATAATACAAGTTCAGTATGTTGAGAATCGTGCTATGGATATTCAGTTGGATGATGAGATGAGTTAAAGGGTTGATAGGATGCTGTTTAAGCTTCCATGATTGAAATTAATGAAGTTTGTGATATATAAATACATTTGGATGGGTTAACATTTAATCAGAACTATGATATTAAGGCCTTTTTCTGCTTGAATTAAAACGTTCTCTGTTTTTCTTGCCTTGTCTTTTAGCCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTGAAAATATTACATTTTTATATATTTAACCATTGATTAATTTGAACTATATCCACATCAAAACTTTTTCAATGTCTTCTGAATTCTGACCTGTTGAACCTCAACTCTTCTTGCAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAGCAGGAACCTTCAACTTCCATTTTATGTCCCTAGTTCACTTTTTCCTTGAACCTTGAGTTGATTGTTGAACTTTAGGCTACTTCAATGTTTACTAATTTTGAAGATTTAAGTTAATGTTGTTCATTTGGTAGCTCGCTCTTAATTTTTTACCCCCTTTTCCTTAATTCTTTATCAGATGGTAACATCTCCTTATTTGATGTGTGGATTAAAGTATAGATTAAGTTAACCATCATGCTTATGCTTTGGCCGACG

mRNA sequence

ATTATTTCCGTACACGCTAGGGTTTTGTCTCAGCACTCCACTATAAATACCTACTTTTTCTTCTAGTTGGTTCTTCAGAAAGCATTTGCCTATTCCAAGGATTTTCGAAGCCCTAACGAGCTCATCAGATTTCCTTCTCGCAAGAAATCCAAACATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGTAATGGTGTTGAAACGCCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAGCAGGAACCTTCAACTTCCATTTTATGTCCCTAGTTCACTTTTTCCTTGAACCTTGAGTTGATTGTTGAACTTTAGGCTACTTCAATGTTTACTAATTTTGAAGATTTAAGTTAATGTTGTTCATTTGGTAGCTCGCTCTTAATTTTTTACCCCCTTTTCCTTAATTCTTTATCAGATGGTAACATCTCCTTATTTGATGTGTGGATTAAAGTATAGATTAAGTTAACCATCATGCTTATGCTTTGGCCGACG

Coding sequence (CDS)

ATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGTAATGGTGTTGAAACGCCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAG

Protein sequence

MGHSNVWNSHPKNYGPGSRTCCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSPIREEYVMDGLW

Homology

[Close]

BLAST of ClCG02G006720.1 vs. NCBI nr
Match: EAZ20624.1 (hypothetical protein OsJ_36239 [Oryza sativa Japonica Group])

HSP 1 Score: 104.0 bits (258), Expect = 6.3e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720.1 vs. NCBI nr
Match: KHN30432.1 (hypothetical protein glysoja_033170 [Glycine soja])

HSP 1 Score: 88.2 bits (217), Expect = 3.6e-14
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRT--CCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWI 60
          MGHSNVWNSHPKNYGPGSRT    +  + P + +SSW+DQ++  +VLQ VLP+Q QGNW+
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTHLRQMPCVWESSWIDQEIWAYVLQAVLPKQCQGNWL 60

Query: 61 HQV 62
          HQV
Sbjct: 61 HQV 63

[Close]

BLAST of ClCG02G006720.1 vs. NCBI nr
Match: VFQ81205.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-07
Identity = 33/65 (50.77%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCCNGVETPGLRKSSWVDQKVRTHVLQ--TVLPQQRQGNWI 60
          MGHSN+WN+HPKNYGPGSR C         R        +R + +    V PQQ QG+WI
Sbjct: 1  MGHSNIWNAHPKNYGPGSRAC---------RVCGNPHAIIRKYGIMCCRVFPQQCQGDWI 56

Query: 61 HQVPL 64
          HQVPL
Sbjct: 61 HQVPL 56

[Close]

BLAST of ClCG02G006720.1 vs. NCBI nr
Match: XP_037477571.1 (uncharacterized protein LOC119354910 isoform X2 [Triticum dicoccoides])

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1   MGHSNVWNSHPKNYGPGSRTCCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQ 55
           +GHSNVWNSHPKNYG GS  C        L + +W D +VR  VLQ V PQQR+
Sbjct: 268 IGHSNVWNSHPKNYGSGSMPC--------LWQLTWPDPQVRADVLQAVFPQQRK 313

[Close]

BLAST of ClCG02G006720.1 vs. NCBI nr
Match: XP_037477572.1 (uncharacterized protein LOC119354910 isoform X3 [Triticum dicoccoides])

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1   MGHSNVWNSHPKNYGPGSRTCCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQ 55
           +GHSNVWNSHPKNYG GS  C        L + +W D +VR  VLQ V PQQR+
Sbjct: 268 IGHSNVWNSHPKNYGSGSMPC--------LWQLTWPDPQVRADVLQAVFPQQRK 313

[Close]

BLAST of ClCG02G006720.1 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-05
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of ClCG02G006720.1 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.1e-05
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPKNYG GSR C
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVC 21

[Close]

BLAST of ClCG02G006720.1 vs. ExPASy TrEMBL
Match: A0A0E0RHR1 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELEYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720.1 vs. ExPASy TrEMBL
Match: A3CHR1 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_36239 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720.1 vs. ExPASy TrEMBL
Match: A0A0E0JAX2 (Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.2e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSRISELEYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720.1 vs. ExPASy TrEMBL
Match: A0A4D9BYH1 (Small subunit ribosomal protein S29e OS=Salvia splendens OX=180675 GN=RP-S29e PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.9e-19
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC----CNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQGN 60
          MGHSN+WNSHPKNYGPGSRTC     +    P +RKSSW +QKV  +VLQTVLPQQ +GN
Sbjct: 1  MGHSNIWNSHPKNYGPGSRTCSAQFSSWSNDPCVRKSSWYNQKVWANVLQTVLPQQCKGN 60

Query: 61 WIHQVPLN 65
          W+HQVPLN
Sbjct: 61 WLHQVPLN 68

[Close]

BLAST of ClCG02G006720.1 vs. ExPASy TrEMBL
Match: A0A0B2RF08 (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_033170 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRT--CCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWI 60
          MGHSNVWNSHPKNYGPGSRT    +  + P + +SSW+DQ++  +VLQ VLP+Q QGNW+
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTHLRQMPCVWESSWIDQEIWAYVLQAVLPKQCQGNWL 60

Query: 61 HQV 62
          HQV
Sbjct: 61 HQV 63

[Close]

BLAST of ClCG02G006720.1 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of ClCG02G006720.1 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of ClCG02G006720.1 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

The following BLAST results are available for this feature:

BLAST of ClCG02G006720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
EAZ20624.1	6.3e-19	56.82	hypothetical protein OsJ_36239 [Oryza sativa Japonica Group]	[more]
KHN30432.1	3.6e-14	63.49	hypothetical protein glysoja_033170 [Glycine soja]	[more]
VFQ81205.1	3.3e-07	50.77	unnamed protein product [Cuscuta campestris]	[more]
XP_037477571.1	2.8e-06	55.56	uncharacterized protein LOC119354910 isoform X2 [Triticum dicoccoides]	[more]
XP_037477572.1	2.8e-06	55.56	uncharacterized protein LOC119354910 isoform X3 [Triticum dicoccoides]	[more]

BLAST of ClCG02G006720.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680P8	3.2e-05	90.48	40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2	[more]
Q5I7K3	4.1e-05	90.48	40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1	[more]

BLAST of ClCG02G006720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0RHR1	3.1e-19	56.82	Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1	[more]
A3CHR1	3.1e-19	56.82	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_36239 PE...	[more]
A0A0E0JAX2	5.2e-19	56.82	Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1	[more]
A0A4D9BYH1	8.9e-19	69.12	Small subunit ribosomal protein S29e OS=Salvia splendens OX=180675 GN=RP-S29e PE...	[more]
A0A0B2RF08	1.7e-14	63.49	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_033170 PE=4 SV=1	[more]

BLAST of ClCG02G006720.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G43980.1	2.3e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	2.3e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	2.3e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043140	Ribosomal protein S14/S29	GENE3D	4.10.830.10	30s Ribosomal Protein S14; Chain N	coord: 1..32 e-value: 1.2E-7 score: 33.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G006720	ClCG02G006720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G006720.1-exon	ClCG02G006720.1-exon-CG_Chr02:7721634..7721849	exon
ClCG02G006720.1-exon	ClCG02G006720.1-exon-CG_Chr02:7722337..7722355	exon
ClCG02G006720.1-exon	ClCG02G006720.1-exon-CG_Chr02:7722846..7722945	exon
ClCG02G006720.1-exon	ClCG02G006720.1-exon-CG_Chr02:7723062..7723381	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G006720.1-five_prime_utr	ClCG02G006720.1-five_prime_utr-CG_Chr02:7721634..7721787	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G006720.1-cds	ClCG02G006720.1-cds-CG_Chr02:7721788..7721849	CDS
ClCG02G006720.1-cds	ClCG02G006720.1-cds-CG_Chr02:7722337..7722355	CDS
ClCG02G006720.1-cds	ClCG02G006720.1-cds-CG_Chr02:7722846..7722945	CDS
ClCG02G006720.1-cds	ClCG02G006720.1-cds-CG_Chr02:7723062..7723129	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G006720.1-three_prime_utr	ClCG02G006720.1-three_prime_utr-CG_Chr02:7723130..7723381	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G006720.1	ClCG02G006720.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane