ClCG02G003880.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G003880.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNL-type domain-containing protein
Location	CG_Chr02: 3946409 .. 3948906 (+)
Sequence length	1063
RNA-Seq Expression	ClCG02G003880.1
Synteny	ClCG02G003880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCAACTTTCCAGTCCCCGCGATATTTTTCTTCCGTCCCTCTCTGTTCTGCCTCTTCTTCTAATTGTAATCGTCTTCTTCTTCTCATTCTCAATTCTGCCTCCGGCAGTCGCTTCTCTCCGGTTGAGATTGATCTCACTGGCTATGGAGTCTCTAATCAACGCGTCTTCTGCTGCGATCGTCTCCTCTTCTTCCTCTTTTCCTATAACTTCTCCCAACAGGATCCTTCCTCTGAGATCTTTTCAAGTTCCGCACGCTTCCAAAGGTATTCATCTCCGAATTCTTTTCTAGTTTCTGTTTCTTTTATTTCTTTTCATCTTCTTAAGGATCGATGAAGTCGGTGTGTCGTCGATACGGTGTTTCTTGTGCTAGTTGAACGATCCTGCTTAACTTTGATTTTGATTCCTCTTCGAAGCAATTTTTTGTGTTTTTTGTTTCGTCTTTCTTATTTTGAGTTGCCTGCTTAAGTGTTGGAATGTTTGTTTAGGTGACGAGAACGAAGCTGATTCTCAGTCTGATTCGAAGAATATCAGGAACCTTCCAATCCTCAGTAGACGGCATCTCTCCCTTTCCCCTCTTTCCAAGGTATCCTCTCTGTATATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAATTTAATGCTCTCTTCCTTTGATTTCTGCAAATTTGAGATGATCAGAATTGATGCTATGTAAATTTTTCCGCGAGTTAAAGTAGGACTGTATTATTCATAAAACTACTTGTTGTGTGGTTTCCTACTCCCTTTTTTTCCCTCCAAAAAAAGAAAAAGAAAAAAAAAAAGAAGAAAAAAAAAAAACTAGAGAGATTTGTTTATTCAAATTTCTATAAGAAGAAAAACGAAGATTGTGGAATAAGAGAATTCATAAACCTTTATATAGGTGCAATTGGTTGGCTTGAATGCTGTCCAATTTCAGCCCAGCCATGAAAGATTATAAAAAATGGGTATCCTAAGTGGCGTTTGAACAATAATGAAGTTCTCTGTTTAAAATAGAAAATAGTATTCCTAGTCCATATTATTAAGAAGTAAAATAGATATATGGACTTTTTGTTTGCCATTCAATCTTATTGAAGCATCCGGTAAAGTTTTTCTGTTTGTTTTCCTTTCTGTGTTAGGATGTTGCAATGGGAGTGGTGCTTAGTGCAGCCACGGGAAGAGGGTGGACGACAGGGTCTGGCATGGAAGGCCCCCCAGCTCCGGCTGGTCTGGAGGCCAAATCAGGCACAGAGAATGTATCCACTTTCCCATGGTCACTTTTCACAAAATCTCCTCGCCGAAGAATGCTCGTGGCTTTTACTTGTAACATTTGTGGGCAACGGACAACACGGGCAATCAACCCCCATGCTTATACCGATGGCACTGTGTTTGTGCAGGTAAGATTTCACAACATTCGTGGAAGGAATTGATGGAAGTGCGTATTTGACTATTTGAGTTCAGTGGAACGGAAGCATATAGTTTCCCTTTTCTTTTTGTTCGTGTATCTACTGAAATGGTTTCATTCACTGTTCTTTTGGGGAAGAATTGATGTCAAAGAAATCAAAATCTGAGCAGCACACAGTAATAATAGCAACCAAATGAGTCTTCTGCATGTAATTGGCTTATAGAACCCTAGTTATATGCATATTAGGTTTATTAGTTTGTTTGTTATTGAGAGCATATTTGTAATAATTAGCTAGGGGAGTTGGTTATGGTTTTTTATTATAAATGGAGGGAGTATATTGGGATTAAGGGAAGAGTGAATTTAGTAGGAGTTTCCATTGTGGGATTCTCGAATGGCTTTCATATACCGTAACTTCTCTTGATGTTGCAATATATTACTGTCTTTGAGTTCTTTTGTGTTTCTTTGAGTTTTCATGTTAGGTGGTATCCTAACATATTCTCTTGGCTATTTTAGTTGTTACATGTTAGGTCCTATAAAGTGTTGCTAAGCAAGCTTAAAGTAGATAATCTGAATTAAATTTGCGGGTAAACAATTTACGAATTGACATGAAACTAACCAGCTTACTCTTTTGTTTCATTATTATAGTGTTGTGGATGCAACGCCTACCACAAGCTCGTGGACAACTTGAACCTATTTCATGAGATGAAATGCTATGTCAACCCAAGTTTTAACTACGGGAGTAACGGATGGGGTGATGTGAACTTCAAATATCTGGACGTGGAAGAAGATGGAAGCGACGATATATTCCCGATACAATGAGGTAAATACTGTGCTTATTGAGTATGTACATTCTGGACTCATCAGTACAAGAATAATTATTTGTTATATATATGCTATATATCGAATAGGAACCCAATTTGGACATAGAAATTGAATACATAGATTCTGCAGGTCAATCAGTGAAACAAATTTTAAAAGCATCTCGATCTTCTGTTAGCTTCCTTGATTGGAGATTAGTTGCAGTTAAACTTAAAAAGATGATGTAGAAGTTGGATTAGTTTAAGAATCGTAATTAGTAGTGGAG

mRNA sequence

ATGTTCCAACTTTCCAGTCCCCGCGATATTTTTCTTCCGTCCCTCTCTGTTCTGCCTCTTCTTCTAATTGTAATCGTCTTCTTCTTCTCATTCTCAATTCTGCCTCCGGCAGTCGCTTCTCTCCGGTTGAGATTGATCTCACTGGCTATGGAGTCTCTAATCAACGCGTCTTCTGCTGCGATCGTCTCCTCTTCTTCCTCTTTTCCTATAACTTCTCCCAACAGGATCCTTCCTCTGAGATCTTTTCAAGTTCCGCACGCTTCCAAAGGTGACGAGAACGAAGCTGATTCTCAGTCTGATTCGAAGAATATCAGGAACCTTCCAATCCTCAGTAGACGGCATCTCTCCCTTTCCCCTCTTTCCAAGGATGTTGCAATGGGAGTGGTGCTTAGTGCAGCCACGGGAAGAGGGTGGACGACAGGGTCTGGCATGGAAGGCCCCCCAGCTCCGGCTGGTCTGGAGGCCAAATCAGGCACAGAGAATGTATCCACTTTCCCATGGTCACTTTTCACAAAATCTCCTCGCCGAAGAATGCTCGTGGCTTTTACTTGTAACATTTGTGGGCAACGGACAACACGGGCAATCAACCCCCATGCTTATACCGATGGCACTGTGTTTGTGCAGTGTTGTGGATGCAACGCCTACCACAAGCTCGTGGACAACTTGAACCTATTTCATGAGATGAAATGCTATGTCAACCCAAGTTTTAACTACGGGAGTAACGGATGGGGTGATGTGAACTTCAAATATCTGGACGTGGAAGAAGATGGAAGCGACGATATATTCCCGATACAATGAGGTAAATACTGTGCTTATTGAGTATGTACATTCTGGACTCATCAGTACAAGAATAATTATTTGTTATATATATGCTATATATCGAATAGGAACCCAATTTGGACATAGAAATTGAATACATAGATTCTGCAGGTCAATCAGTGAAACAAATTTTAAAAGCATCTCGATCTTCTGTTAGCTTCCTTGATTGGAGATTAGTTGCAGTTAAACTTAAAAAGATGATGTAGAAGTTGGATTAGTTTAAGAATCGTAATTAGTAGTGGAG

Coding sequence (CDS)

ATGTTCCAACTTTCCAGTCCCCGCGATATTTTTCTTCCGTCCCTCTCTGTTCTGCCTCTTCTTCTAATTGTAATCGTCTTCTTCTTCTCATTCTCAATTCTGCCTCCGGCAGTCGCTTCTCTCCGGTTGAGATTGATCTCACTGGCTATGGAGTCTCTAATCAACGCGTCTTCTGCTGCGATCGTCTCCTCTTCTTCCTCTTTTCCTATAACTTCTCCCAACAGGATCCTTCCTCTGAGATCTTTTCAAGTTCCGCACGCTTCCAAAGGTGACGAGAACGAAGCTGATTCTCAGTCTGATTCGAAGAATATCAGGAACCTTCCAATCCTCAGTAGACGGCATCTCTCCCTTTCCCCTCTTTCCAAGGATGTTGCAATGGGAGTGGTGCTTAGTGCAGCCACGGGAAGAGGGTGGACGACAGGGTCTGGCATGGAAGGCCCCCCAGCTCCGGCTGGTCTGGAGGCCAAATCAGGCACAGAGAATGTATCCACTTTCCCATGGTCACTTTTCACAAAATCTCCTCGCCGAAGAATGCTCGTGGCTTTTACTTGTAACATTTGTGGGCAACGGACAACACGGGCAATCAACCCCCATGCTTATACCGATGGCACTGTGTTTGTGCAGTGTTGTGGATGCAACGCCTACCACAAGCTCGTGGACAACTTGAACCTATTTCATGAGATGAAATGCTATGTCAACCCAAGTTTTAACTACGGGAGTAACGGATGGGGTGATGTGAACTTCAAATATCTGGACGTGGAAGAAGATGGAAGCGACGATATATTCCCGATACAATGA

Protein sequence

MFQLSSPRDIFLPSLSVLPLLLIVIVFFFSFSILPPAVASLRLRLISLAMESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPILSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSLFTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMKCYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ

Homology

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BLAST of ClCG02G003880.1 vs. NCBI nr
Match: XP_008447918.1 (PREDICTED: uncharacterized protein LOC103490262 [Cucumis melo] >KAA0025115.1 Mitochondrial protein import protein ZIM17 [Cucumis melo var. makuwa] >TYK19358.1 Mitochondrial protein import protein ZIM17 [Cucumis melo var. makuwa])

HSP 1 Score: 421.4 bits (1082), Expect = 5.8e-114
Identity = 205/216 (94.91%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSAAIVSSSSSFPI+SP R LPLRSFQVPHASKG++NE+DSQSDS NIRNLPI
Sbjct: 1   MESLINASSAAIVSSSSSFPISSPIRNLPLRSFQVPHASKGNDNESDSQSDSNNIRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LS+RHLSLSPLSKDVAMG+VLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL
Sbjct: 61  LSKRHLSLSPLSKDVAMGMVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CY+NPSFNYGSNGWGDVNFKYLDVEEDG+DDIFPIQ
Sbjct: 181 CYINPSFNYGSNGWGDVNFKYLDVEEDGNDDIFPIQ 216

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BLAST of ClCG02G003880.1 vs. NCBI nr
Match: XP_022953012.1 (uncharacterized protein LOC111455528 [Cucurbita moschata] >KAG6572131.1 hypothetical protein SDJN03_28859, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011787.1 ZIM17 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 419.9 bits (1078), Expect = 1.7e-113
Identity = 202/216 (93.52%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSAAI+SSSSSFPI+SPNR+LPLRSFQVPHASKG+ENE+DSQSDSKNIRNLPI
Sbjct: 1   MESLINASSAAIISSSSSFPISSPNRMLPLRSFQVPHASKGNENESDSQSDSKNIRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LSRRHLSLSPLSKD AMGVVL AA GRGWTTGSGMEGPPAPAGLEA SGTENVSTFPWSL
Sbjct: 61  LSRRHLSLSPLSKDAAMGVVLGAAAGRGWTTGSGMEGPPAPAGLEANSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CYVNP FNYGSNGWGD+NFKYLD+EEDG+DD FPIQ
Sbjct: 181 CYVNPGFNYGSNGWGDLNFKYLDIEEDGNDDTFPIQ 216

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BLAST of ClCG02G003880.1 vs. NCBI nr
Match: XP_023511505.1 (uncharacterized protein LOC111776313 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.1 bits (1076), Expect = 2.9e-113
Identity = 202/216 (93.52%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSAAI+SSSSSFPI+SPNR+LPLRSFQVPHASKG+ENE+DSQSDSKNIRNLPI
Sbjct: 1   MESLINASSAAIISSSSSFPISSPNRMLPLRSFQVPHASKGNENESDSQSDSKNIRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LSRRHLSLSPLSKD AMGVVL AA GRGWTTGSGMEGPPAPAGLEA SGTENVSTFPWSL
Sbjct: 61  LSRRHLSLSPLSKDAAMGVVLGAAAGRGWTTGSGMEGPPAPAGLEANSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CYVNP FNYGSNGWGD+NFKYLD+EEDG+DD FPIQ
Sbjct: 181 CYVNPGFNYGSNGWGDLNFKYLDMEEDGNDDTFPIQ 216

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BLAST of ClCG02G003880.1 vs. NCBI nr
Match: XP_004144863.1 (uncharacterized protein LOC101212325 [Cucumis sativus] >KGN43276.1 hypothetical protein Csa_020164 [Cucumis sativus])

HSP 1 Score: 418.7 bits (1075), Expect = 3.8e-113
Identity = 202/216 (93.52%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSA IVSSSSSFPI+SP R LPLRSFQVPHASKG++NE+DSQSDSKN RNLPI
Sbjct: 1   MESLINASSAGIVSSSSSFPISSPIRNLPLRSFQVPHASKGNDNESDSQSDSKNTRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LS+RHLSLSPLSKDVAMG+VLSAATGRGWTTGSGMEGPPAPAG+EAKSGTENVSTFPWSL
Sbjct: 61  LSKRHLSLSPLSKDVAMGMVLSAATGRGWTTGSGMEGPPAPAGMEAKSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CY+NPSFNYGSNGWGDVNFKYLDVEEDG+DD+FPIQ
Sbjct: 181 CYINPSFNYGSNGWGDVNFKYLDVEEDGNDDVFPIQ 216

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BLAST of ClCG02G003880.1 vs. NCBI nr
Match: XP_038886988.1 (uncharacterized protein LOC120077156 [Benincasa hispida])

HSP 1 Score: 418.3 bits (1074), Expect = 4.9e-113
Identity = 204/216 (94.44%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSAAIVSSSSSFPI SPNR+LPLRSFQVPHASKG+ENE+DS+SDSKNIRNLPI
Sbjct: 1   MESLINASSAAIVSSSSSFPIPSPNRMLPLRSFQVPHASKGNENESDSESDSKNIRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LS+RHLSLSPL KDVAMGVVLSAA GRGWTTGSGMEGPPAPAGLE KSGTENVSTFPWSL
Sbjct: 61  LSKRHLSLSPLPKDVAMGVVLSAARGRGWTTGSGMEGPPAPAGLEGKSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CYVNPSFNYGSNGW DVNFKYLD+EE GSDDIFPIQ
Sbjct: 181 CYVNPSFNYGSNGWEDVNFKYLDIEEGGSDDIFPIQ 216

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BLAST of ClCG02G003880.1 vs. ExPASy Swiss-Prot
Match: B3LPE4 (Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain RM11-1a) OX=285006 GN=ZIM17 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 172 KSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHE 228
           K  + +M++AFTC  C  R++  ++  AY  GTV + C  C   H + D+L +FH+
Sbjct: 63  KVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHD 118

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy Swiss-Prot
Match: B5VQB0 (Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain AWRI1631) OX=545124 GN=ZIM17 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 172 KSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHE 228
           K  + +M++AFTC  C  R++  ++  AY  GTV + C  C   H + D+L +FH+
Sbjct: 63  KVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHD 118

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy Swiss-Prot
Match: A6ZSH0 (Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=ZIM17 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 172 KSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHE 228
           K  + +M++AFTC  C  R++  ++  AY  GTV + C  C   H + D+L +FH+
Sbjct: 63  KVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHD 118

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy Swiss-Prot
Match: P42844 (Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ZIM17 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 172 KSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHE 228
           K  + +M++AFTC  C  R++  ++  AY  GTV + C  C   H + D+L +FH+
Sbjct: 63  KVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHD 118

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy Swiss-Prot
Match: Q9D113 (DNL-type zinc finger protein OS=Mus musculus OX=10090 GN=Dnlz PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.4e-06
Identity = 20/50 (40.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 180 VAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 230
           + +TC +CG R+++ I+  AY  G V V C GC  +H + DNL+ F ++K
Sbjct: 75  LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLK 124

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy TrEMBL
Match: A0A5D3D712 (Mitochondrial protein import protein ZIM17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00120 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.8e-114
Identity = 205/216 (94.91%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSAAIVSSSSSFPI+SP R LPLRSFQVPHASKG++NE+DSQSDS NIRNLPI
Sbjct: 1   MESLINASSAAIVSSSSSFPISSPIRNLPLRSFQVPHASKGNDNESDSQSDSNNIRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LS+RHLSLSPLSKDVAMG+VLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL
Sbjct: 61  LSKRHLSLSPLSKDVAMGMVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CY+NPSFNYGSNGWGDVNFKYLDVEEDG+DDIFPIQ
Sbjct: 181 CYINPSFNYGSNGWGDVNFKYLDVEEDGNDDIFPIQ 216

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy TrEMBL
Match: A0A1S3BII6 (uncharacterized protein LOC103490262 OS=Cucumis melo OX=3656 GN=LOC103490262 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.8e-114
Identity = 205/216 (94.91%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSAAIVSSSSSFPI+SP R LPLRSFQVPHASKG++NE+DSQSDS NIRNLPI
Sbjct: 1   MESLINASSAAIVSSSSSFPISSPIRNLPLRSFQVPHASKGNDNESDSQSDSNNIRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LS+RHLSLSPLSKDVAMG+VLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL
Sbjct: 61  LSKRHLSLSPLSKDVAMGMVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CY+NPSFNYGSNGWGDVNFKYLDVEEDG+DDIFPIQ
Sbjct: 181 CYINPSFNYGSNGWGDVNFKYLDVEEDGNDDIFPIQ 216

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy TrEMBL
Match: A0A6J1GM10 (uncharacterized protein LOC111455528 OS=Cucurbita moschata OX=3662 GN=LOC111455528 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 8.2e-114
Identity = 202/216 (93.52%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSAAI+SSSSSFPI+SPNR+LPLRSFQVPHASKG+ENE+DSQSDSKNIRNLPI
Sbjct: 1   MESLINASSAAIISSSSSFPISSPNRMLPLRSFQVPHASKGNENESDSQSDSKNIRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LSRRHLSLSPLSKD AMGVVL AA GRGWTTGSGMEGPPAPAGLEA SGTENVSTFPWSL
Sbjct: 61  LSRRHLSLSPLSKDAAMGVVLGAAAGRGWTTGSGMEGPPAPAGLEANSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CYVNP FNYGSNGWGD+NFKYLD+EEDG+DD FPIQ
Sbjct: 181 CYVNPGFNYGSNGWGDLNFKYLDIEEDGNDDTFPIQ 216

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy TrEMBL
Match: A0A0A0K614 (DNL-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G016610 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.8e-113
Identity = 202/216 (93.52%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPI 109
           MESLINASSA IVSSSSSFPI+SP R LPLRSFQVPHASKG++NE+DSQSDSKN RNLPI
Sbjct: 1   MESLINASSAGIVSSSSSFPISSPIRNLPLRSFQVPHASKGNDNESDSQSDSKNTRNLPI 60

Query: 110 LSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSL 169
           LS+RHLSLSPLSKDVAMG+VLSAATGRGWTTGSGMEGPPAPAG+EAKSGTENVSTFPWSL
Sbjct: 61  LSKRHLSLSPLSKDVAMGMVLSAATGRGWTTGSGMEGPPAPAGMEAKSGTENVSTFPWSL 120

Query: 170 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 229
           FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 230 CYVNPSFNYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           CY+NPSFNYGSNGWGDVNFKYLDVEEDG+DD+FPIQ
Sbjct: 181 CYINPSFNYGSNGWGDVNFKYLDVEEDGNDDVFPIQ 216

[Close]

BLAST of ClCG02G003880.1 vs. ExPASy TrEMBL
Match: A0A6J1HYG2 (uncharacterized protein LOC111468074 OS=Cucurbita maxima OX=3661 GN=LOC111468074 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 6.9e-113
Identity = 217/269 (80.67%), Postives = 232/269 (86.25%), Query Frame = 0


Query: 7   PRDIFLPSL--SVLPLLLIVIVFFF--------SFSILPPAVASLRLRLISLAMESLINA 66
           P    +P+L  S LPLL I +  F          FS++  +   L    IS +MESLINA
Sbjct: 26  PAIFCVPNLLASALPLLYIFVFCFLILQSSYGGFFSVIRFSPVELS---ISPSMESLINA 85

Query: 67  SSAAIVSSSSSFPITSPNRILPLRSFQVPHASKGDENEADSQSDSKNIRNLPILSRRHLS 126
           SSAAI+SSSSSFPI+SPNR+LPLRSFQVPHASKG+ENE+DSQSDSKNIRNLPILSRRHLS
Sbjct: 86  SSAAIISSSSSFPISSPNRMLPLRSFQVPHASKGNENESDSQSDSKNIRNLPILSRRHLS 145

Query: 127 LSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVSTFPWSLFTKSPRR 186
           LSPLSKD AMGVVL AA GRGWTTGSGMEGPPAPAGLEA SGTENVSTFPWSLFTKSPRR
Sbjct: 146 LSPLSKDAAMGVVLGAAAGRGWTTGSGMEGPPAPAGLEANSGTENVSTFPWSLFTKSPRR 205

Query: 187 RMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMKCYVNPSF 246
           RMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMKCYVNP F
Sbjct: 206 RMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMKCYVNPGF 265

Query: 247 NYGSNGWGDVNFKYLDVEEDGSDDIFPIQ 266
           NYGSNGWGD+NFKYLD+EEDG+DD FPIQ
Sbjct: 266 NYGSNGWGDLNFKYLDMEEDGNDDTFPIQ 291

[Close]

BLAST of ClCG02G003880.1 vs. TAIR 10
Match: AT5G27280.1 (Zim17-type zinc finger protein )

HSP 1 Score: 208.0 bits (528), Expect = 9.4e-54
Identity = 122/225 (54.22%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 50  MESLINASSAAIVSSSSS-FPITSPNRIL----PLRSFQVPHASKGDENEADSQSDSKNI 109
           ME+   +S+A I+SSSSS   I SP +      P R  ++  ++K ++ + D Q    N 
Sbjct: 1   MEATSLSSAATIISSSSSPLSIFSPKKRTDSSPPPRIVRL--SNKKEDKDYDPQHSESNS 60

Query: 110 RNLPILSRRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPPAPAGLEAKSGTENVST 169
            +L            LS D AMG+VLSAA+ +GWTTGSGMEGP  P    AK+ T+ VST
Sbjct: 61  SSL-------FRNRTLSNDEAMGLVLSAASVKGWTTGSGMEGPSLP----AKTDTDTVST 120

Query: 170 FPWSLFTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNL 229
           FPWSLFTKSPRRRM VAFTCN+CGQRTTRAINPHAYTDGTVFVQCCGCN +HKLVDNLNL
Sbjct: 121 FPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNL 180

Query: 230 FHEMKCYV-NPSFNYGSNGWGDVNFKYLDVEED----GSDDIFPI 265
           FHE+K YV + SF+Y    W        D E+D     S+D+FP+
Sbjct: 181 FHEVKYYVSSSSFDYTDAKWDVSGLNLFDDEDDDNAGDSNDVFPL 212

[Close]

BLAST of ClCG02G003880.1 vs. TAIR 10
Match: AT1G68730.1 (Zim17-type zinc finger protein )

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-15
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 168 SLFTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHE 227
           S+  K PRR + V FTCN CG+RT R IN HAY  G VFVQC GC  +HKLVDNL L  E
Sbjct: 96  SIDIKLPRRSLQVEFTCNSCGERTKRLINRHAYEKGLVFVQCAGCLKHHKLVDNLGLIVE 155

The following BLAST results are available for this feature:

BLAST of ClCG02G003880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447918.1	5.8e-114	94.91	PREDICTED: uncharacterized protein LOC103490262 [Cucumis melo] >KAA0025115.1 Mit...	[more]
XP_022953012.1	1.7e-113	93.52	uncharacterized protein LOC111455528 [Cucurbita moschata] >KAG6572131.1 hypothet...	[more]
XP_023511505.1	2.9e-113	93.52	uncharacterized protein LOC111776313 [Cucurbita pepo subsp. pepo]	[more]
XP_004144863.1	3.8e-113	93.52	uncharacterized protein LOC101212325 [Cucumis sativus] >KGN43276.1 hypothetical ...	[more]
XP_038886988.1	4.9e-113	94.44	uncharacterized protein LOC120077156 [Benincasa hispida]	[more]

BLAST of ClCG02G003880.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3LPE4	3.2e-06	35.71	Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain R...	[more]
B5VQB0	3.2e-06	35.71	Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain A...	[more]
A6ZSH0	3.2e-06	35.71	Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain Y...	[more]
P42844	3.2e-06	35.71	Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain A...	[more]
Q9D113	5.4e-06	40.00	DNL-type zinc finger protein OS=Mus musculus OX=10090 GN=Dnlz PE=1 SV=1	[more]

BLAST of ClCG02G003880.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D712	2.8e-114	94.91	Mitochondrial protein import protein ZIM17 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BII6	2.8e-114	94.91	uncharacterized protein LOC103490262 OS=Cucumis melo OX=3656 GN=LOC103490262 PE=...	[more]
A0A6J1GM10	8.2e-114	93.52	uncharacterized protein LOC111455528 OS=Cucurbita moschata OX=3662 GN=LOC1114555...	[more]
A0A0A0K614	1.8e-113	93.52	DNL-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G016610 PE...	[more]
A0A6J1HYG2	6.9e-113	80.67	uncharacterized protein LOC111468074 OS=Cucurbita maxima OX=3661 GN=LOC111468074...	[more]

BLAST of ClCG02G003880.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27280.1	9.4e-54	54.22	Zim17-type zinc finger protein	[more]
AT1G68730.1	5.0e-15	61.67	Zim17-type zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 180..229 e-value: 4.4E-16 score: 58.6
IPR007853	Zinc finger, DNL-type	PROSITE	PS51501	ZF_DNL	coord: 173..265 score: 14.573229
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 50..264
None	No IPR available	PANTHER	PTHR20922:SF15	A_TM021B04.14 PROTEIN	coord: 50..264

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G003880	ClCG02G003880	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003880.1-exon	ClCG02G003880.1-exon-CG_Chr02:3946409..3946676	exon
ClCG02G003880.1-exon	ClCG02G003880.1-exon-CG_Chr02:3946899..3946996	exon
ClCG02G003880.1-exon	ClCG02G003880.1-exon-CG_Chr02:3947557..3947814	exon
ClCG02G003880.1-exon	ClCG02G003880.1-exon-CG_Chr02:3948468..3948906	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003880.1-cds	ClCG02G003880.1-cds-CG_Chr02:3946409..3946676	CDS
ClCG02G003880.1-cds	ClCG02G003880.1-cds-CG_Chr02:3946899..3946996	CDS
ClCG02G003880.1-cds	ClCG02G003880.1-cds-CG_Chr02:3947557..3947814	CDS
ClCG02G003880.1-cds	ClCG02G003880.1-cds-CG_Chr02:3948468..3948641	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003880.1-three_prime_utr	ClCG02G003880.1-three_prime_utr-CG_Chr02:3948642..3948906	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G003880.1	ClCG02G003880.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0051087	chaperone binding