ClCG02G003370.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G003370.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	40S ribosomal protein S11-like
Location	CG_Chr02: 3304883 .. 3307455 (-)
Sequence length	931
RNA-Seq Expression	ClCG02G003370.1
Synteny	ClCG02G003370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCGAAGCAGGTTTAGGGTTTCAGTAATCGAACTCCTCTCCTTCGGCCGCCTGAGCAAAGACCAGAACGCGTGCTCTCTTCAGAATCCCTATTCATGGCGGAACAGGTTTCTATTCAATCGCCAACATTCACTTCTGTTCCCGTCTATTATGTTTGTTTCATTTTATTCACTTTAACGTTCTATCTCCCAACTCTTCATTCTTTTTCTACAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTGTTTCTCTGGTAAGCCCGCCCAATTGAAATATTATTTTGTTGTCAGTTTTAGATTGACATTTATTTAGGTTCTTATTTCTTGAACTGTTGTTCTTATTTGCTGTAATCCTGATTTTATTTTCTGATTTTGATTATTGTTCTTTTTTGGATAAAAAAATAGCTCTAAAAAGGCTGGGAAAGGGACGAGACCTGGAAAGGGTGGGAACCGTTTCTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGAGAAGCCATTGAAGGTTCGGTTTTTTTACAACTCTGATCACTTTGTGTTTGTTGGATTGTTAATATGAATGTGTTTAGCCCTTAATTAATTCTTAATTTTATATAGCGCTTAATTAATTCTTATAACATGATGAATGCTATTTAAATCAGCAGTCTTGTTGGAATGCTTATTTAAGTGCTATTTTGTTCCAATGCTGAAAGCATATAATTCTGTTAAAGAATATATTGGAAAAACAGTATGAGTTGAAGGGATAGTTGTGTTGAGGGTTTTATTACATTTTATTTAAAATGGGTCTATGTTTCTGCATAGATACAATGGCGTTTCCTACTTGATGGATGGTTGAGGGAGTTTGCAAAATAAAGGGCTTATGTTGATGGAATGATGCTTATCTTAGTAGACTCTCCAACTAATTATGCATCATATAAAGGAATCGTCATGACATCTCATTTATTGAGAGATTAAGATTGAATGCGGAAATGCTAATACCCCGTATCCCCTCTCTAGGCTTGGTCCCGTCACTTATCCTGTGTACTTTATGCATCCTGGCTTACCTTGCTATCATGTTCTTTGAATTGTTGCTGTGAATAAGGATGCATCCTGTAAATGGGAATTTCTGAGCAATACAGCAATCCTCATTTACCCTATGTAGTTGTGTTGAGGGTTTTATTACATTTTATTTAAAATGGGTCTATGTTTCTGCATAGATACAATGGCGTTTCCTACTTGATGGATGGTTGAGGGAGTTTGCAAAATAAAGGGCTTATGTTGATGGAATGATGCTTATCTTAGTAGACTCTCCAACTAATTATGCATCATATAAAGGAATCGTCATGACATCTCATTTATTGAGAGATTAAGATTGAATGCGGAAATGCTAATACCCCGTATCCCCTTTCTAGGCTTGGTCCCGTCACTTATCCTGTGTACTTTATGCATCCTGGCTTACCTTGCTATCATGTTCTTTGAATTGTTGCTGTGAATAAGGATGCATCCTGTAAATGGGAATTTCTGAGCAATACAGCAATCCTCATTTACCCTATGTATTGTATGCATCTTTATCTCTACATTTCTAAGGCATAATATTTAGGCATATTTTGCTGTTTTCTTATGTTCTTTTGAATTGTTGCTGAATATTAGAATGCTATTTACTTAATGATTATTTGAATTCTGCTATATTTGTACAGGAACATATATTGATAAGAAATGCCCCTTCACTGGAACTGTCTCGGTCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTTAGGACCATAATTGTCAGGAGGAACTACTTACATTATGTTAAGAAGTATCAGAGGTACTTTCCTGAGCCCCCCACCCCCACCCGAGCTGCTCTTTTTTCTTTGTGGTTCAATATATTTTGTTTCTTCTGTTGTTATCCAAAAAATATATTTTGTTTCTTCTGTCTCCTTCAGGTATGAGAAAAGGCACTCCAACATTCCTGCTCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGTACATAAAGATTCGAGGAATTCTTTCCATTGGTTGTTTTTGTTGTATGTTTTCTTTTGAAGAGAACTTGTTGAACATTTACTGTTTGAATTTCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCCGGAATTTAAATTATGTAGGTTTCCGCTTTTGATACAAAAAAACAGCATGAAAGAACTTTTGCGAGTTGTAGGCCATATTTGATGGATGCAAAAAGGTTTTGATGACTTGGCAGTCTGGATTTTGATATGAATATGGACTGTTTTATTGTGTTCTATTTGTTTTGATTTCTTGGGGTTTTGAAGGCACCAACTTTTCCTGGATCTCTATTAGGTATTCTAATACATGTCAGTTTTTTATTATGAGATATTTGTTCCACCGCGGTCGAGCTGGTTTTCGACAGAATCCTCTTAGAGTTAAATTAGTGATTGTAAAGTGTCATTGTGAGATCTGGTTTATGCATGCATATAAACTTTTTCGTTCCTTG

mRNA sequence

CTCCGAAGCAGGTTTAGGGTTTCAGTAATCGAACTCCTCTCCTTCGGCCGCCTGAGCAAAGACCAGAACGCGTGCTCTCTTCAGAATCCCTATTCATGGCGGAACAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTGTTTCTCTGCTCTAAAAAGGCTGGGAAAGGGACGAGACCTGGAAAGGGTGGGAACCGTTTCTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGAGAAGCCATTGAAGGAACATATATTGATAAGAAATGCCCCTTCACTGGAACTGTCTCGGTCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTTAGGACCATAATTGTCAGGAGGAACTACTTACATTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCTGCTCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCCGGAATTTAAATTATGTAGGTTTCCGCTTTTGATACAAAAAAACAGCATGAAAGAACTTTTGCGAGTTGTAGGCCATATTTGATGGATGCAAAAAGGTTTTGATGACTTGGCAGTCTGGATTTTGATATGAATATGGACTGTTTTATTGTGTTCTATTTGTTTTGATTTCTTGGGGTTTTGAAGGCACCAACTTTTCCTGGATCTCTATTAGGTATTCTAATACATGTCAGTTTTTTATTATGAGATATTTGTTCCACCGCGGTCGAGCTGGTTTTCGACAGAATCCTCTTAGAGTTAAATTAGTGATTGTAAAGTGTCATTGTGAGATCTGGTTTATGCATGCATATAAACTTTTTCGTTCCTTG

Coding sequence (CDS)

ATGGCGGAACAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTGTTTCTCTGCTCTAAAAAGGCTGGGAAAGGGACGAGACCTGGAAAGGGTGGGAACCGTTTCTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGAGAAGCCATTGAAGGAACATATATTGATAAGAAATGCCCCTTCACTGGAACTGTCTCGGTCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTTAGGACCATAATTGTCAGGAGGAACTACTTACATTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCTGCTCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCCGGAATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI

Homology

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BLAST of ClCG02G003370.1 vs. NCBI nr
Match: XP_038887258.1 (40S ribosomal protein S11-like [Benincasa hispida])

HSP 1 Score: 323.6 bits (828), Expect = 9.9e-85
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKAGKG RPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima] >KAG7011817.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKG RPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. NCBI nr
Match: KAG6572178.1 (Glutamate receptor 3.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1    MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
            MAEQTEKAFLKQPKVFLCSKK+GKG RPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1522 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 1581

Query: 61   FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
            FTGTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 1582 FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 1641

Query: 121  GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
            GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 1642 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 1680

[Close]

BLAST of ClCG02G003370.1 vs. NCBI nr
Match: XP_023554629.1 (40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKG RPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 159

[Close]

BLAST of ClCG02G003370.1 vs. NCBI nr
Match: XP_008447825.1 (PREDICTED: 40S ribosomal protein S11-like [Cucumis melo] >TYK23274.1 40S ribosomal protein S11-like [Cucumis melo var. makuwa])

HSP 1 Score: 317.8 bits (813), Expect = 5.4e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK  KG RPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.4e-81
Identity = 144/156 (92.31%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKG +PGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAF 157
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS++ GKKAF
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.0e-81
Identity = 145/159 (91.19%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKG RPGKGGNRFWKSIGLGFKTPREAI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAF  I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-80
Identity = 145/159 (91.19%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL +KK GKG RPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VS+RGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS  KKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-80
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKG RPGKGGNRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-80
Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK +GKG RPGKGGNRFWK+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy TrEMBL
Match: A0A6J1HZI1 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.1e-84
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKG RPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy TrEMBL
Match: A0A6J1GJT3 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.1e-84
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKG RPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy TrEMBL
Match: A0A5D3DI18 (40S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003300 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK  KG RPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy TrEMBL
Match: A0A1S3BHR3 (40S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK  KG RPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. ExPASy TrEMBL
Match: A0A0A0K691 (Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025720 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK  KG +PGKGGNRFWK+IGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVS+RGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of ClCG02G003370.1 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 298.9 bits (764), Expect = 2.4e-81
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKG RPGKGGNRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of ClCG02G003370.1 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 298.9 bits (764), Expect = 2.4e-81
Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK +GKG RPGKGGNRFWK+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of ClCG02G003370.1 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 297.4 bits (760), Expect = 7.0e-81
Identity = 142/159 (89.31%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKAGKGTRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKG RPGKGGNRFWK+IGLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSVRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVS+RGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSSS GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:

BLAST of ClCG02G003370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887258.1	9.9e-85	98.11	40S ribosomal protein S11-like [Benincasa hispida]	[more]
XP_022952178.1	6.4e-84	96.86	40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma...	[more]
KAG6572178.1	6.4e-84	96.86	Glutamate receptor 3.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023554629.1	2.4e-83	96.23	40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo]	[more]
XP_008447825.1	5.4e-83	96.23	PREDICTED: 40S ribosomal protein S11-like [Cucumis melo] >TYK23274.1 40S ribosom...	[more]

BLAST of ClCG02G003370.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25460	2.4e-81	92.31	40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1	[more]
Q9M5M1	4.0e-81	91.19	40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1	[more]
P17093	1.2e-80	91.19	40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2	[more]
P16181	3.4e-80	89.38	40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1	[more]
P42733	3.4e-80	89.31	40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2	[more]

BLAST of ClCG02G003370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZI1	3.1e-84	96.86	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 ...	[more]
A0A6J1GJT3	3.1e-84	96.86	40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=...	[more]
A0A5D3DI18	2.6e-83	96.23	40S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BHR3	2.6e-83	96.23	40S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1	[more]
A0A0A0K691	1.0e-82	94.97	Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G02...	[more]

BLAST of ClCG02G003370.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48930.1	2.4e-81	89.38	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G23740.1	2.4e-81	89.31	ribosomal protein S11-beta	[more]
AT4G30800.1	7.0e-81	89.31	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 131..138 score: 73.25 coord: 121..131 score: 60.91 coord: 88..111 score: 37.33
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 74..142 e-value: 7.1E-26 score: 90.1
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..159
IPR032440	40S ribosomal protein S11, N-terminal	PFAM	PF16205	Ribosomal_S17_N	coord: 4..72 e-value: 1.0E-30 score: 105.9
None	No IPR available	GENE3D	2.40.50.1000		coord: 1..158 e-value: 4.3E-83 score: 279.0
None	No IPR available	PANTHER	PTHR10744:SF24	40S RIBOSOMAL PROTEIN S11-1-RELATED	coord: 1..159
IPR028333	Ribosomal protein S17, archaeal/eukaryotic	TIGRFAM	TIGR03630	TIGR03630	coord: 54..143 e-value: 3.9E-34 score: 114.7
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 121..133
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 68..147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G003370	ClCG02G003370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003370.1-exon	ClCG02G003370.1-exon-CG_Chr02:3304883..3305329	exon
ClCG02G003370.1-exon	ClCG02G003370.1-exon-CG_Chr02:3305426..3305515	exon
ClCG02G003370.1-exon	ClCG02G003370.1-exon-CG_Chr02:3305634..3305778	exon
ClCG02G003370.1-exon	ClCG02G003370.1-exon-CG_Chr02:3306950..3307050	exon
ClCG02G003370.1-exon	ClCG02G003370.1-exon-CG_Chr02:3307202..3307242	exon
ClCG02G003370.1-exon	ClCG02G003370.1-exon-CG_Chr02:3307349..3307455	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003370.1-three_prime_utr	ClCG02G003370.1-three_prime_utr-CG_Chr02:3304883..3305238	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003370.1-cds	ClCG02G003370.1-cds-CG_Chr02:3305239..3305329	CDS
ClCG02G003370.1-cds	ClCG02G003370.1-cds-CG_Chr02:3305426..3305515	CDS
ClCG02G003370.1-cds	ClCG02G003370.1-cds-CG_Chr02:3305634..3305778	CDS
ClCG02G003370.1-cds	ClCG02G003370.1-cds-CG_Chr02:3306950..3307050	CDS
ClCG02G003370.1-cds	ClCG02G003370.1-cds-CG_Chr02:3307202..3307242	CDS
ClCG02G003370.1-cds	ClCG02G003370.1-cds-CG_Chr02:3307349..3307360	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003370.1-five_prime_utr	ClCG02G003370.1-five_prime_utr-CG_Chr02:3307361..3307455	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G003370.1	ClCG02G003370.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding