ClCG02G003065.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G003065.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	PHYTOCHROME_2 domain-containing protein
Location	CG_Chr02: 3003061 .. 3003486 (-)
Sequence length	426
RNA-Seq Expression	ClCG02G003065.1
Synteny	ClCG02G003065.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAGGACCCCGAAGAGGCCGCCAACACGGCCACTGAGGAAGAAAGTTTGGCATTCAAGAAGAAGCGGGCTCGACGCGTGAGCTTTGCTGATGTCGAGATCACTTCTGTGCATATCTTTAAGCGCGATGAGGACTACGAGACGCCTCCTGAGCCCCAAGCCACTCCGGAGGCTGCTCTTCCGGACAACGAGGTCCTAGGGTTCTTCAGGGACTTGGCTGATAGCGATGATTCCCGTGAATCTTCGCCTAATTTAGATGACGATGTTCTTGGGCAGAGGAAATCGTTTTTGAGGCCGCTTGGATCGCCGTCGCCGGGGAGTATTTCTGCCGGTTCTGCAGCCTCCAATGATGGCATGTTTTTCTGTTTCTTTCTCTCTTCGTTTTATGTAGCATTTTGTTTGTTGGGTTTTTCGATTTGA

mRNA sequence

ATGGCTTCCAAGGACCCCGAAGAGGCCGCCAACACGGCCACTGAGGAAGAAAGTTTGGCATTCAAGAAGAAGCGGGCTCGACGCGTGAGCTTTGCTGATGTCGAGATCACTTCTGTGCATATCTTTAAGCGCGATGAGGACTACGAGACGCCTCCTGAGCCCCAAGCCACTCCGGAGGCTGCTCTTCCGGACAACGAGGTCCTAGGGTTCTTCAGGGACTTGGCTGATAGCGATGATTCCCGTGAATCTTCGCCTAATTTAGATGACGATGTTCTTGGGCAGAGGAAATCGTTTTTGAGGCCGCTTGGATCGCCGTCGCCGGGGAGTATTTCTGCCGGTTCTGCAGCCTCCAATGATGGCATGTTTTTCTGTTTCTTTCTCTCTTCGTTTTATGTAGCATTTTGTTTGTTGGGTTTTTCGATTTGA

Coding sequence (CDS)

ATGGCTTCCAAGGACCCCGAAGAGGCCGCCAACACGGCCACTGAGGAAGAAAGTTTGGCATTCAAGAAGAAGCGGGCTCGACGCGTGAGCTTTGCTGATGTCGAGATCACTTCTGTGCATATCTTTAAGCGCGATGAGGACTACGAGACGCCTCCTGAGCCCCAAGCCACTCCGGAGGCTGCTCTTCCGGACAACGAGGTCCTAGGGTTCTTCAGGGACTTGGCTGATAGCGATGATTCCCGTGAATCTTCGCCTAATTTAGATGACGATGTTCTTGGGCAGAGGAAATCGTTTTTGAGGCCGCTTGGATCGCCGTCGCCGGGGAGTATTTCTGCCGGTTCTGCAGCCTCCAATGATGGCATGTTTTTCTGTTTCTTTCTCTCTTCGTTTTATGTAGCATTTTGTTTGTTGGGTTTTTCGATTTGA

Protein sequence

MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEAALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASNDGMFFCFFLSSFYVAFCLLGFSI

Homology

[Close]

BLAST of ClCG02G003065.1 vs. NCBI nr
Match: XP_004144623.1 (uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus] >XP_031744676.1 uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus] >KGN43391.1 hypothetical protein Csa_020302 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.7e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIFKRDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADREITSVHIFKRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. NCBI nr
Match: XP_031744677.1 (uncharacterized protein LOC101212645 isoform X2 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.7e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIFKRDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADREITSVHIFKRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. NCBI nr
Match: KAA0059264.1 (uncharacterized protein E6C27_scaffold430G001990 [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. NCBI nr
Match: XP_016902820.1 (PREDICTED: uncharacterized protein LOC103500493 isoform X2 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. NCBI nr
Match: XP_008462023.1 (PREDICTED: uncharacterized protein LOC103500493 isoform X3 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. ExPASy TrEMBL
Match: A0A0A0K6D4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031030 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIFKRDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADREITSVHIFKRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. ExPASy TrEMBL
Match: A0A5A7UW10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001990 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. ExPASy TrEMBL
Match: A0A5D3BZ82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663G00140 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. ExPASy TrEMBL
Match: A0A1S3CFV9 (uncharacterized protein LOC103500493 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500493 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. ExPASy TrEMBL
Match: A0A1S4E4B4 (uncharacterized protein LOC103500493 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500493 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]

BLAST of ClCG02G003065.1 vs. TAIR 10
Match: AT2G04235.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 713 Blast hits to 345 proteins in 122 species: Archae - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants - 39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 1   MASKDPEEAANT----ATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPP---- 60
           MAS+ PE+  N      T+EES+A ++KR RRVSFAD EITSVHIF RDEDYETPP    
Sbjct: 1   MASEKPEDPMNNTAGIGTDEESIAQRRKRLRRVSFADREITSVHIFNRDEDYETPPNTSA 60

Query: 61  -EPQATPEAALP--DNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGS 120
            +PQ   + + P  DN+V+ FF +L+D +D+        + +L   KSFLRP  SPS G 
Sbjct: 61  AKPQNGGDTSEPDEDNKVIRFFGELSDREDTDGDGDGEYEPILD--KSFLRPKYSPSSGG 120

Query: 121 ISAGSAASNDG--MFFCFFLSSFY 132
            + GSA S++G     C F   F+
Sbjct: 121 STVGSATSDNGTLQLLCEFRVLFF 142

The following BLAST results are available for this feature:

BLAST of ClCG02G003065.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144623.1	2.7e-54	96.64	uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus] >XP_031744676....	[more]
XP_031744677.1	2.7e-54	96.64	uncharacterized protein LOC101212645 isoform X2 [Cucumis sativus]	[more]
KAA0059264.1	6.1e-54	95.80	uncharacterized protein E6C27_scaffold430G001990 [Cucumis melo var. makuwa]	[more]
XP_016902820.1	6.1e-54	95.80	PREDICTED: uncharacterized protein LOC103500493 isoform X2 [Cucumis melo]	[more]
XP_008462023.1	6.1e-54	95.80	PREDICTED: uncharacterized protein LOC103500493 isoform X3 [Cucumis melo]	[more]

BLAST of ClCG02G003065.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G003065.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D4	1.3e-54	96.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031030 PE=4 SV=1	[more]
A0A5A7UW10	3.0e-54	95.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BZ82	3.0e-54	95.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFV9	3.0e-54	95.80	uncharacterized protein LOC103500493 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E4B4	3.0e-54	95.80	uncharacterized protein LOC103500493 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of ClCG02G003065.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04235.1	1.6e-20	46.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..62
None	No IPR available	PANTHER	PTHR35707	OS06G0608100 PROTEIN	coord: 1..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G003065	ClCG02G003065	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003065.1-exon	ClCG02G003065.1-exon-CG_Chr02:3003061..3003486	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003065.1-cds	ClCG02G003065.1-cds-CG_Chr02:3003061..3003486	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G003065.1	ClCG02G003065.1-protein	polypeptide