ClCG01G023670.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G023670.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	50S ribosomal protein L34, chloroplastic
Location	CG_Chr01: 36950704 .. 36951877 (+)
Sequence length	745
RNA-Seq Expression	ClCG01G023670.1
Synteny	ClCG01G023670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTAGCTGAAAGGGGGAAACAGACAGTCTTAACAATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCACCGGAGCAACTGCTGTCCGCGTTCCCTCGGCTTCTCTTGTAATCTCCACCGGTTCTAGAGGTTGCTGCTCCGTATCCCTGAATACCGCCAACAAAACTTCCTCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCGTCTTCCTCCCTTTCGTGCTCTTCATCTTTTTCAGGTGAGTATTTTTTACTCTCTAATTTCTGTATCAGTTCAGGTCATTTAATGATTTCGCGTTATTGCTCTCCCATTTGCCTATGTACTGGAGTCTATAGTAGTTCACTGAAGTATTTATTTGATTTCGTGTGTGTTTATCACTTCCGTTTTATTTAATAATTTCACGGCTGGTCAATTTCCGCTTGCATTTGATTTGTTATGACTTCTCTCTTATTCTCATTTTTGAATTGTAAGTGAATAAAAGATGGTGCAGGTAGCTGCATATCGCCATTTTTTATATCTAATAATTCTTTGTGTTTCACTTGTTGAGGGGAAAATAAAAGATTATATTCACCCTCTCCTGAAATGTTGTGGAGCTTCTCTTGCATTACTTAATTTTATTGATCAAGATTTTGTACCATTATCTTTAAGTGGTAGTGCGCATATGCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGATCGGAGTCGGGCAAGGGAAGGGTAGGAGCCTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGTAAGTCCTTAGCTCGGACTCACGGTTTTCGCAGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTAAAGCGCAGACGGGCCAAGGGTAGGAAGGTCCTTTGCACAAAATCCAACCCAAGCAGCGGAAAGGGTGCTTAAGTTTTTCTCGCTTTAACCATTTGTAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGGTCAAGGTAGCTCACTATATTACATGATGCTTTGTATCTGATTCATTTGAAAGTTTCTTAATTGTCAATGTTAAATTCAAATGTCTGGACGGGACTAGCTTATGTGATTGATGCTTTCGTATGGTTCATTTGAAAATTTCCTCTGAACTGAAATATGTACATCTTCTTAAAAC

mRNA sequence

GAATTAGCTGAAAGGGGGAAACAGACAGTCTTAACAATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCACCGGAGCAACTGCTGTCCGCGTTCCCTCGGCTTCTCTTGTAATCTCCACCGGTTCTAGAGGTTGCTGCTCCGTATCCCTGAATACCGCCAACAAAACTTCCTCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCGTCTTCCTCCCTTTCGTGCTCTTCATCTTTTTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGATCGGAGTCGGGCAAGGGAAGGGTAGGAGCCTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGTAAGTCCTTAGCTCGGACTCACGGTTTTCGCAGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTAAAGCGCAGACGGGCCAAGGGTAGGAAGGTCCTTTGCACAAAATCCAACCCAAGCAGCGGAAAGGGTGCTTAAGTTTTTCTCGCTTTAACCATTTGTAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGGTCAAGGTAGCTCACTATATTACATGATGCTTTGTATCTGATTCATTTGAAAGTTTCTTAATTGTCAATGTTAAATTCAAATGTCTGGACGGGACTAGCTTATGTGATTGATGCTTTCGTATGGTTCATTTGAAAATTTCCTCTGAACTGAAATATGTACATCTTCTTAAAAC

Coding sequence (CDS)

ATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCACCGGAGCAACTGCTGTCCGCGTTCCCTCGGCTTCTCTTGTAATCTCCACCGGTTCTAGAGGTTGCTGCTCCGTATCCCTGAATACCGCCAACAAAACTTCCTCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCGTCTTCCTCCCTTTCGTGCTCTTCATCTTTTTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGATCGGAGTCGGGCAAGGGAAGGGTAGGAGCCTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGTAAGTCCTTAGCTCGGACTCACGGTTTTCGCAGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTAAAGCGCAGACGGGCCAAGGGTAGGAAGGTCCTTTGCACAAAATCCAACCCAAGCAGCGGAAAGGGTGCTTAA

Protein sequence

MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Homology

[Close]

BLAST of ClCG01G023670.1 vs. NCBI nr
Match: XP_038883793.1 (50S ribosomal protein L34, chloroplastic [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLSSPWVSTGATAVRVPSASLVISTG RGCCSVSLNTAN TS+RSGLLHCSFL S
Sbjct: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGFRGCCSVSLNTANNTSARSGLLHCSFLSS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of ClCG01G023670.1 vs. NCBI nr
Match: XP_008439748.1 (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSK+GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of ClCG01G023670.1 vs. NCBI nr
Match: XP_004134668.1 (50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypothetical protein Csa_003653 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 143/155 (92.26%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLS+PWVSTGA AVRVPSASLV STGSRG CSVSLNT N  S+RSGLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of ClCG01G023670.1 vs. NCBI nr
Match: XP_022142342.1 (50S ribosomal protein L34, chloroplastic [Momordica charantia])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 142/155 (91.61%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLS+PWV +GA AVRVPSASLVISTGSR CCSVSLNTAN TS+RSGLL CSFLPS
Sbjct: 1   MAAISVLSTPWVLSGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S+I VGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGFSLGLDWNSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTTSGRAVLKRRRAKGRKVLCTKS PSSGKGA
Sbjct: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 155

[Close]

BLAST of ClCG01G023670.1 vs. NCBI nr
Match: KAA0052628.1 (50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 131/155 (84.52%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHC     
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC----- 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
                      LSLGLDWSSK+GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  -----------LSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 139

[Close]

BLAST of ClCG01G023670.1 vs. ExPASy Swiss-Prot
Match: P82244 (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-34
Identity = 103/157 (65.61%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAV-RVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFL- 60
           MA +S+LS+     GA    R PSASL   TGSR   +    + N  S+RSG LHCSFL 
Sbjct: 1   MATLSLLST---GVGAAITNRTPSASLTFITGSR--TTNKRVSFNGGSARSGSLHCSFLA 60

Query: 61  PSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHG 120
           PSSSL  SS+FSGLSLGLD +S  GV   + R  VVRAGKAALC TKR+RSRKSLARTHG
Sbjct: 61  PSSSL--SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHG 120

Query: 121 FRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           FR RM TTSGRA+LKRRRAKGRK+LCTK+NPSSGK A
Sbjct: 121 FRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

[Close]

BLAST of ClCG01G023670.1 vs. ExPASy Swiss-Prot
Match: Q9LP37 (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.0e-30
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 0


Query: 2   AAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSS 61
           +A S L +P  S G   + VPSASL + TG R   S     +  +S+ S LLHCSFL SS
Sbjct: 11  SASSRLWNPAASNG--KICVPSASLSLRTGCRRSSS-----SLTSSASSQLLHCSFL-SS 70

Query: 62  SLSCSSSFSGLSLGLDWSSKI-GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 121
            +S +S FSGLS+  D SS+  G+   + R LVVRAGKAALCQTKR+RSRKSLARTHGFR
Sbjct: 71  PVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFR 130

Query: 122 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTTSGRA +KRRRAKGR  LC KSNPSSGK A
Sbjct: 131 RRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157

[Close]

BLAST of ClCG01G023670.1 vs. ExPASy TrEMBL
Match: A0A5D3CSJ7 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008120 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.5e-67
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSK+GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of ClCG01G023670.1 vs. ExPASy TrEMBL
Match: A0A1S3AZG6 (50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.5e-67
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSK+GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of ClCG01G023670.1 vs. ExPASy TrEMBL
Match: A0A0A0KI92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.3e-65
Identity = 143/155 (92.26%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLS+PWVSTGA AVRVPSASLV STGSRG CSVSLNT N  S+RSGLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of ClCG01G023670.1 vs. ExPASy TrEMBL
Match: A0A6J1CMH5 (50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012484 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64
Identity = 142/155 (91.61%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLS+PWV +GA AVRVPSASLVISTGSR CCSVSLNTAN TS+RSGLL CSFLPS
Sbjct: 1   MAAISVLSTPWVLSGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S+I VGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGFSLGLDWNSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTTSGRAVLKRRRAKGRKVLCTKS PSSGKGA
Sbjct: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 155

[Close]

BLAST of ClCG01G023670.1 vs. ExPASy TrEMBL
Match: A0A5A7UBQ8 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002370 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.7e-56
Identity = 131/155 (84.52%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPS 60
           MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHC     
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC----- 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
                      LSLGLDWSSK+GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  -----------LSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 139

[Close]

BLAST of ClCG01G023670.1 vs. TAIR 10
Match: AT1G29070.1 (Ribosomal protein L34 )

HSP 1 Score: 131.7 bits (330), Expect = 5.0e-31
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 0


Query: 2   AAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSS 61
           +A S L +P  S G   + VPSASL + TG R   S     +  +S+ S LLHCSFL SS
Sbjct: 11  SASSRLWNPAASNG--KICVPSASLSLRTGCRRSSS-----SLTSSASSQLLHCSFL-SS 70

Query: 62  SLSCSSSFSGLSLGLDWSSKI-GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 121
            +S +S FSGLS+  D SS+  G+   + R LVVRAGKAALCQTKR+RSRKSLARTHGFR
Sbjct: 71  PVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFR 130

Query: 122 RRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA 156
           RRMRTTSGRA +KRRRAKGR  LC KSNPSSGK A
Sbjct: 131 RRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157

The following BLAST results are available for this feature:

BLAST of ClCG01G023670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883793.1	1.8e-67	96.13	50S ribosomal protein L34, chloroplastic [Benincasa hispida]	[more]
XP_008439748.1	1.5e-66	94.84	PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 5...	[more]
XP_004134668.1	1.1e-64	92.26	50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypotheti...	[more]
XP_022142342.1	1.2e-63	91.61	50S ribosomal protein L34, chloroplastic [Momordica charantia]	[more]
KAA0052628.1	1.6e-55	84.52	50S ribosomal protein L34 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG01G023670.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82244	3.6e-34	65.61	50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 P...	[more]
Q9LP37	7.0e-30	61.94	50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]

BLAST of ClCG01G023670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSJ7	7.5e-67	94.84	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AZG6	7.5e-67	94.84	50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452...	[more]
A0A0A0KI92	5.3e-65	92.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1	[more]
A0A6J1CMH5	5.9e-64	91.61	50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7UBQ8	7.7e-56	84.52	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of ClCG01G023670.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29070.1	5.0e-31	61.94	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 109..144 e-value: 4.6E-12 score: 45.7
IPR000271	Ribosomal protein L34	TIGRFAM	TIGR01030	TIGR01030	coord: 110..143 e-value: 1.8E-10 score: 38.8
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 13..154
IPR000271	Ribosomal protein L34	HAMAP	MF_00391	Ribosomal_L34	coord: 97..145 score: 12.648815
None	No IPR available	GENE3D	1.10.287.3980		coord: 97..155 e-value: 8.4E-26 score: 91.4
None	No IPR available	PANTHER	PTHR14503:SF9	BNAC06G17900D PROTEIN	coord: 13..154

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G023670	ClCG01G023670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G023670.1-exon	ClCG01G023670.1-exon-CG_Chr01:36950704..36950950	exon
ClCG01G023670.1-exon	ClCG01G023670.1-exon-CG_Chr01:36951380..36951877	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G023670.1-five_prime_utr	ClCG01G023670.1-five_prime_utr-CG_Chr01:36950704..36950739	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G023670.1-cds	ClCG01G023670.1-cds-CG_Chr01:36950740..36950950	CDS
ClCG01G023670.1-cds	ClCG01G023670.1-cds-CG_Chr01:36951380..36951636	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G023670.1-three_prime_utr	ClCG01G023670.1-three_prime_utr-CG_Chr01:36951637..36951877	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G023670.1	ClCG01G023670.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome