ClCG01G013640.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G013640.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	50S ribosomal protein L19, chloroplastic-like
Location	CG_Chr01: 27007512 .. 27011483 (-)
Sequence length	570
RNA-Seq Expression	ClCG01G013640.2
Synteny	ClCG01G013640.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTTTACTAGTATGATTTGTTCTTGTGTTGTTTTCAGAGGTTCTATTATTCACTAAATTTACTTTAGTTTTATGCAATTGTTTTTGGAGGTTCTATAACTATTCACTAAATCTACTTTGGTTTTATACATATATAATTGCGACATTTATTCTACTTCGAATTGGAGGCTTTATGACTTCATTTATGCTTAACGTTTTAGTTCATAAGCAGTGAAACAAGTAAATATCATAATATCGGTCTTGGGCAGCACTCTTGATTGGTGGTAGGGAAATATGTATAGTTTCTTATCAAATGTGTATGTTATGCATGTGTCCCTAATACTGACCAGACATGATATGTGTTAAATGTCTTATTGCTATAAGGTAACGTAGAGTATGAGTAATTAGCTAGAACTAACTCCTAGTTTAATTATGGATCTGAGCCATTTGCTGTGGGTGTGCCGGTTTGCAAAATACCCTTGGTATCAGTGGCAAATTTTCATTTGGAGTTAGTGGGGGTTGGGTGTTCTTTGTTGGTGGAAAAGTGATTTTGCACTCCCCTTCCTTTTAGGGAGAAGAGTGTTGTGGCAAGCAAGCTTCTTTGCTATTTTGTGGAGTATATTGGTTGGAGTGTAATCGTATTTGAGGTTGAGAGAAATCTAGAGAGGAAGTTTGGGAGTTGGTGAGGTTTAATCCTTCCATTTGGGTGTCGGTCACTCGATTGTTCTGTACTTTTGATATTGGTCTTGTTCTTTTGGATTGGAGTCTTTTTTGTAGTTAGTGTTAGTGAGGTTCATTGTCCAACTGTACCTGAATAACCTATTGAAACATGATTTACATAACTGCCTAATATGACTTACATAACTGCCTATATCACTCTTTCTAATAACATAGACATTCAGATCAACCACGCCCATAAATTCAATAACATGAGAATTTCATATTTACATAACTAGATACTCCAAACTCTTTCACAAATAAACTTAGATGACATATACAATAACGAGTCTCACATCCCAACTACTAGTTGGCTATTTTTACATGTCACATACACAAAGTTATTTACACATACAGCAACCGAAATGCAAAGTATCTTCTGATAACTCGAAGCTTAAGCAGTAGGCTAAGCACCGGGAACTTCTTCGCTACCTGGGTGGGAAAGAAAACATGGAAAACATGAGCTGAGTGCCTAGCTCAGTGAGTGACATAGTATTTTAAACACAACTCGAGAACCAAATCATGCTCAATAATATAGAAAACAAAACTTTAGCATAAAACTCATGTTAAGCCTTGAAATAAAACATAAGTCAGGTCTTTTACATAAATACAGTTTACTAACTCATCAAACCTTTTAAAATTCCCTTAGTTGAGGCGGAGCAAGGCTCAACACACTTAATGTCGAAAACAAGGAGTAATCTCGACACACCCAACGTCGAAAACCTTAGCTGATGTAGGGTAACCTCAACACATCAACGTCATCAACCACTATGTGCACATAGGACTATCTCGAGATGCCCAAGTAGTACTAGGTCCCCAAGAAACTCAAATGACTTCTCAATGTTCTTTAGCATTGAGCTCCTTTAAGTCACAGGGTTGCCCACATGCCTTCTTAACGTCCCTCAACATTAGGTCCCTTAGAAAACATTTTAGAAACATGTATGCTAAAACATTTAAATGGAAAACAGAGCATTTCTCAATAAATATCATCTTATAAACATGCTTTTCAAAAACTTGTAGAAAACAGATAAAACATGTCTTTCATGCCATAAAATCAAATATAACCAGCCATCATGCTTATCTTGTAATAACTCATCATAAAATCATATTTTATAAGAAAGTCTGGCTAAACATTTTAAATAGAATCGTTTTTAGAGAAAGAAAGGTGTCACCCACAATCTGGGCCTGTTCCTCAAGGTCTATAGGCTTTTCCAACCTTAATATGACCTGAAATATCAATTACGAGCCATTAGATCCTCTCCTTGAAGTCCTTACAATGATCACTTAACTACATTTCATCCACGTTGTCCATATCAAGCCTAATTTACACAATTTCTATCATTTTACGCTTTTAGGGACCTTTTTGCAAAATTCTCAAAATTTCCAAAAATGCTTAAAAATTCATATTTTCCATTTTTAGGCCAATAATTCAAGAAAATATCAATTTGGGTCCAAAAATGTTCAAAATTACCCAAAATAGCCGTAGGCAACCTTGGTGGGCAGCAGCTGTGCGAGGGGGTGTCAATAGGTGCAGGGCGTGGGCGCTGGGTGGGCGTGGGCGTGGGCAGCTCTGGCAGCCTCTTCGGCTAGTAGTGTTCTATTTCCAACCCGATTTTTCAGAACTCCAAAACACTATTTCCTTTTAAATAAAAATCAAATAAAAATTATGGAACTCAAGTTTAACCTCTTAACTAGCTTACCAAGAAAATTCAGCTCGAAAAACCTTCCTGAGTACCCTTGAAAAATTTCTCAAAGCTAACTCGTCTAATTTGCTCGGTTTCTGCGATAATCTTCAGTATTTTGACCATTTCTCAAGCTTCCCGACCTCAAATCACTTTGTCAGCCCTATGTCATCTTCCTAACTCACAGAGCTTCCTCTGGTTCAAAAATGGTGAAAATAGCACGAGGGAATCGGGAGAACCATCAGGTTAATTGAGCTGCTTGCCTAGAGTCCGAGCTGCTACCCAGACCAACCAATCAGCTTTAACCACTCACCAGCTTGCTTCAACGTGTCTCCTCTTCATTTCTCCTTATTCTAAACATCCAAATTAAATATAATTTTATTTAAATAATCATTTTAATTTAATTTAATATTTATTTCCTAATTCTTTCATTTTTCCAACATAAGTTCGGTTTTCTTGTCAATTTTTGTTTTCTTTTTTGAAAAGCATTTTGCTATTGTCTGACTCATAGTTATTATGTATTCTATTTCCCCTTTCAACAAATTAAGTATAGAGAACCACATATTTATTTTGTAATTAGTCTGTCTGAAATGTAATTAGCTTGCATCAAGCTGATATAACTATTAAGGGGAAAAAATGTGGTTATAGTTCTTTTCTTCTATGATCCTTGCTAATTGGAGGGCCTTTCTGTAATTTCCTTGGCATCTATGGAGATTGGTTATCTTCCTCTTATTACCTCTTTTCTTTCAATATTCCTGCAAAACAGAAAAGCTGTCAACTATCCTAGTGAGAAATGTTTTAAGAAATTGTGTATATGAACTTTCTGTTGGTTTATGGGTACCATTTATTTAAGAGTCTATTTTGTAATTTATCCCTTTGTAACAATTTATACAACTATTTAGCAGAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAAAGTTCAGTCAAATTATTATCATGTTGCATTACTTTCAGATAATGTTCTTATTCTAAACAGCAGTTGTAGATGAGGTTATGGAACAGTTTTTTGGCTTTTCTTGTTATGTGTGAAAAGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGCTGGGATTGAGTCCCTCTTCCCTCTGTAA

mRNA sequence

ATGGTCAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGCTGGGATTGAGTCCCTCTTCCCTCTGTAA

Coding sequence (CDS)

ATGGTCAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGCTGGGATTGAGTCCCTCTTCCCTCTGTAA

Protein sequence

MVKNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAGIESLFPL

Homology

[Close]

BLAST of ClCG01G013640.2 vs. NCBI nr
Match: XP_038896029.1 (uncharacterized protein LOC120084206 [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 9.3e-66
Identity = 145/187 (77.54%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFVPSRKHVSS CSAF SS PH+FQLAEI APFSSRGIATTSSMES+LQGS A
Sbjct: 79  KNMSSQMEFVPSRKHVSSVCSAFPSSRPHLFQLAEIVAPFSSRGIATTSSMESALQGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDSDITPRIKFKRLDKTS+HIM                              QILDKEAV
Sbjct: 139 VDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEAV 198

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KAQREIPDI+PGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAG G
Sbjct: 199 EEVKAQREIPDIRPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of ClCG01G013640.2 vs. NCBI nr
Match: XP_023522394.1 (uncharacterized protein LOC111786317 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 8.2e-62
Identity = 139/188 (73.94%), Postives = 146/188 (77.66%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPF-SSRGIATTSSMESSLQGST 62
           ++  SQMEFVPSR HV+STCSAFQS W H FQLAEIAAPF SSRGIATTSSMES+ QGS 
Sbjct: 44  RSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSRGIATTSSMESAPQGSP 103

Query: 63  AVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEA 122
           AVDSDITPRIKFKRLDKTS+HIM                              QILDKEA
Sbjct: 104 AVDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEA 163

Query: 123 VEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGA 182
           + E KAQREIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAG 
Sbjct: 164 IGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGV 201

Query: 183 GIESLFPL 190
           GIESLFPL
Sbjct: 224 GIESLFPL 201

[Close]

BLAST of ClCG01G013640.2 vs. NCBI nr
Match: XP_023522393.1 (50S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 8.2e-62
Identity = 139/188 (73.94%), Postives = 146/188 (77.66%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPF-SSRGIATTSSMESSLQGST 62
           ++  SQMEFVPSR HV+STCSAFQS W H FQLAEIAAPF SSRGIATTSSMES+ QGS 
Sbjct: 44  RSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSRGIATTSSMESAPQGSP 103

Query: 63  AVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEA 122
           AVDSDITPRIKFKRLDKTS+HIM                              QILDKEA
Sbjct: 104 AVDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEA 163

Query: 123 VEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGA 182
           + E KAQREIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAG 
Sbjct: 164 IGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGV 201

Query: 183 GIESLFPL 190
           GIESLFPL
Sbjct: 224 GIESLFPL 201

[Close]

BLAST of ClCG01G013640.2 vs. NCBI nr
Match: KAE8652777.1 (hypothetical protein Csa_022701 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61
Identity = 139/187 (74.33%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFVP RKH SST SAFQSS PH FQLAE AAPFSSRGIATTSSMES+LQGS A
Sbjct: 310 KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 369

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 370 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 429

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 430 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 466

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 490 IESLFPL 466

[Close]

BLAST of ClCG01G013640.2 vs. NCBI nr
Match: XP_031743848.1 (50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_031743849.1 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_031743851.1 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61
Identity = 139/187 (74.33%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFVP RKH SST SAFQSS PH FQLAE AAPFSSRGIATTSSMES+LQGS A
Sbjct: 83  KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 142

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 143 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 202

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 203 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 239

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 263 IESLFPL 239

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy Swiss-Prot
Match: P82413 (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.8e-18
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+K+AV  A+  R +P I+ G IVQ+++EVPENKRR+S  KGIVI+R+NAG++TT R+R
Sbjct: 125 ILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIR 184

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FPL
Sbjct: 185 RIIAGVGVEIVFPL 198

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy Swiss-Prot
Match: Q8W463 (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 40/74 (54.05%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+++A+E A+  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 117 ILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 176

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 177 RIIAGIGVEIVFPI 190

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy Swiss-Prot
Match: Q8RXX5 (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-17
Identity = 39/74 (52.70%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           +L+K+A+E A+  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 121 LLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 180

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 181 RIIAGIGVEIVFPI 194

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy Swiss-Prot
Match: B6IP95 (50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplS PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-10
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 114 LQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTF 173
           LQ L++E V +  A + IP   PG  V++ V+V E  R RV   +G+VIAR+NAGLN++F
Sbjct: 4   LQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNSSF 63

Query: 174 RLRRLVAGAGIESLFPL 190
            +R++  G G+E +FPL
Sbjct: 64  TVRKISYGEGVERVFPL 80

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy Swiss-Prot
Match: Q2G8H1 (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplS PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 114 LQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTF 173
           +Q L+ EA+ E KA++EIPD + G  V++ V V E +R RV   +G+ IAR N GL + F
Sbjct: 4   IQQLEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNF 63

Query: 174 RLRRLVAGAGIESLFPL 190
            +R++  G G+E +FPL
Sbjct: 64  TVRKISFGEGVERVFPL 80

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy TrEMBL
Match: A0A0A0LV41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.7e-62
Identity = 139/187 (74.33%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           KN SSQMEFVP RKH SST SAFQSS PH FQLAE AAPFSSRGIATTSSMES+LQGS A
Sbjct: 216 KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 275

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 276 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 335

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAG G
Sbjct: 336 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 372

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 396 IESLFPL 372

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy TrEMBL
Match: A0A6J1K1Y5 (50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 135/187 (72.19%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           K+  SQMEF+PS K VSS C AFQS   H+FQLAEIAAPFSSRGIATTSSMES+ QGS A
Sbjct: 79  KDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLAEIAAPFSSRGIATTSSMESAPQGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           +DSDITPRIKFKRLDKTS+HIM                              QILDKEA+
Sbjct: 139 IDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEAI 198

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAG G
Sbjct: 199 EEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy TrEMBL
Match: A0A6J1K3G4 (50S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 135/187 (72.19%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           K+  SQMEF+PS K VSS C AFQS   H+FQLAEIAAPFSSRGIATTSSMES+ QGS A
Sbjct: 80  KDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLAEIAAPFSSRGIATTSSMESAPQGSPA 139

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           +DSDITPRIKFKRLDKTS+HIM                              QILDKEA+
Sbjct: 140 IDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEAI 199

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAG G
Sbjct: 200 EEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVG 236

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 260 IESLFPL 236

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy TrEMBL
Match: A0A6J1GVN3 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 135/187 (72.19%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           K+  SQMEF+PS K VSSTC AFQS   H+FQLAEIAAPFSSRGIATTSSMES+ QGS+ 
Sbjct: 80  KDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSSRGIATTSSMESAPQGSSG 139

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           +D+DITPRIKFKRLDKTS+HIM                              QILDKEAV
Sbjct: 140 IDTDITPRIKFKRLDKTSKHIM------------------------------QILDKEAV 199

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAG G
Sbjct: 200 EEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVG 236

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 260 IESLFPL 236

[Close]

BLAST of ClCG01G013640.2 vs. ExPASy TrEMBL
Match: A0A6J1GUP7 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 135/187 (72.19%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 3   KNTSSQMEFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTA 62
           K+  SQMEF+PS K VSSTC AFQS   H+FQLAEIAAPFSSRGIATTSSMES+ QGS+ 
Sbjct: 79  KDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSSRGIATTSSMESAPQGSSG 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           +D+DITPRIKFKRLDKTS+HIM                              QILDKEAV
Sbjct: 139 IDTDITPRIKFKRLDKTSKHIM------------------------------QILDKEAV 198

Query: 123 EEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGAG 182
           EE KA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAG G
Sbjct: 199 EEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of ClCG01G013640.2 vs. TAIR 10
Match: AT4G11630.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 148.3 bits (373), Expect = 6.3e-36
Identity = 84/148 (56.76%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 42  FSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHL 101
           ++SR  +TT   +SS+QGS   D  +  RIKFKRLDKT++HIM                 
Sbjct: 76  YASRCFSTTG--DSSVQGSPESDCVVPQRIKFKRLDKTAKHIM----------------- 135

Query: 102 PFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVI 161
                        QI+DKEAVEE ++ REIP+IKPGYIVQLKVEVPENKRRVS +KG+VI
Sbjct: 136 -------------QIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVI 191

Query: 162 ARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           ARRNAGLN+TFR+RRLVAG G+ES+FPL
Sbjct: 196 ARRNAGLNSTFRIRRLVAGVGVESMFPL 191

[Close]

BLAST of ClCG01G013640.2 vs. TAIR 10
Match: AT1G24240.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-35
Identity = 85/148 (57.43%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 42  FSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHL 101
           FSSR  +TT     S+QGS   D  +  RIKFKRLDKT++HIM                 
Sbjct: 74  FSSRCFSTTG---DSVQGSPESDCVVPQRIKFKRLDKTAKHIM----------------- 133

Query: 102 PFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVI 161
                        QI+DKEAVEE +  REIP+IKPGYIVQLKVEVPENKRRVS +KG+VI
Sbjct: 134 -------------QIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVI 188

Query: 162 ARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           ARRNAGLN+TFR+RRLVAG G+ES+FPL
Sbjct: 194 ARRNAGLNSTFRIRRLVAGVGVESMFPL 188

[Close]

BLAST of ClCG01G013640.2 vs. TAIR 10
Match: AT5G11750.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 145.6 bits (366), Expect = 4.1e-35
Identity = 84/149 (56.38%), Postives = 101/149 (67.79%), Query Frame = 0


Query: 42  FSSRGIATT-SSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFH 101
           +S R  +TT  S++S+ QGS   D  +  RIKFKRLDKT++HIM                
Sbjct: 77  YSLRCFSTTGDSVQSTPQGSPESDCVVPQRIKFKRLDKTAKHIM---------------- 136

Query: 102 LPFVCFQYIAFFSLQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIV 161
                         QI+DKEAVEE +  REIP+IKPGYIVQLKVEVPENKRRVS +KG+V
Sbjct: 137 --------------QIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVV 195

Query: 162 IARRNAGLNTTFRLRRLVAGAGIESLFPL 190
           IARRNAGLN+TFR+RRLVAG G+ES+FPL
Sbjct: 197 IARRNAGLNSTFRIRRLVAGVGVESMFPL 195

[Close]

BLAST of ClCG01G013640.2 vs. TAIR 10
Match: AT4G17560.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 40/74 (54.05%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+++A+E A+  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 117 ILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 176

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 177 RIIAGIGVEIVFPI 190

[Close]

BLAST of ClCG01G013640.2 vs. TAIR 10
Match: AT5G47190.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-18
Identity = 39/74 (52.70%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 116 ILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           +L+K+A+E A+  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 121 LLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 180

Query: 176 RLVAGAGIESLFPL 190
           R++AG G+E +FP+
Sbjct: 181 RIIAGIGVEIVFPI 194

The following BLAST results are available for this feature:

BLAST of ClCG01G013640.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896029.1	9.3e-66	77.54	uncharacterized protein LOC120084206 [Benincasa hispida]	[more]
XP_023522394.1	8.2e-62	73.94	uncharacterized protein LOC111786317 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023522393.1	8.2e-62	73.94	50S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. ...	[more]
KAE8652777.1	1.4e-61	74.33	hypothetical protein Csa_022701 [Cucumis sativus]	[more]
XP_031743848.1	1.4e-61	74.33	50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_0317...	[more]

BLAST of ClCG01G013640.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82413	5.8e-18	58.11	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P...	[more]
Q8W463	2.2e-17	54.05	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q8RXX5	3.7e-17	52.70	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
B6IP95	4.4e-10	45.45	50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q2G8H1	5.8e-10	44.16	50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]

BLAST of ClCG01G013640.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV41	6.7e-62	74.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1	[more]
A0A6J1K1Y5	1.7e-60	72.19	50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1K3G4	1.7e-60	72.19	50S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1GVN3	1.7e-60	72.19	54S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1GUP7	1.7e-60	72.19	54S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]

BLAST of ClCG01G013640.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11630.1	6.3e-36	56.76	Ribosomal protein L19 family protein	[more]
AT1G24240.1	1.1e-35	57.43	Ribosomal protein L19 family protein	[more]
AT5G11750.1	4.1e-35	56.38	Ribosomal protein L19 family protein	[more]
AT4G17560.1	1.6e-18	54.05	Ribosomal protein L19 family protein	[more]
AT5G47190.1	2.7e-18	52.70	Ribosomal protein L19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 121..189 e-value: 6.8E-15 score: 55.0
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 3..189
IPR038657	Ribosomal protein L19 superfamily	GENE3D	2.30.30.790		coord: 106..189 e-value: 5.1E-16 score: 60.6
None	No IPR available	PANTHER	PTHR15680:SF9	39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL	coord: 3..189
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 117..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G013640	ClCG01G013640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G013640.2-exon	ClCG01G013640.2-exon-CG_Chr01:27007512..27007649	exon
ClCG01G013640.2-exon	ClCG01G013640.2-exon-CG_Chr01:27007771..27008196	exon
ClCG01G013640.2-exon	ClCG01G013640.2-exon-CG_Chr01:27011478..27011483	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G013640.2-cds	ClCG01G013640.2-cds-CG_Chr01:27007512..27007649	CDS
ClCG01G013640.2-cds	ClCG01G013640.2-cds-CG_Chr01:27007771..27008196	CDS
ClCG01G013640.2-cds	ClCG01G013640.2-cds-CG_Chr01:27011478..27011483	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G013640.2	ClCG01G013640.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome