ClCG01G013450.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G013450.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S ribosomal protein L27A
Location	CG_Chr01: 26636224 .. 26637768 (-)
Sequence length	441
RNA-Seq Expression	ClCG01G013450.2
Synteny	ClCG01G013450.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCCGCTTCAAGAAGAACAGAAAGAAGCGCGGTCACGTGAGCGCCGGCCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCAGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTTGGTAAAGTTGGTATGAGGTACTTCCACAAGCTCCGTAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTTCCTCAGGAGGTGAAGGACAAGGCTTCTAAGGATAATGTCCCTTTGATTGATGTTACCCAGTTTGGGTATTTCAAAGTTTTGGGTAAAGGGGTTTTGCCTGAGAACCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCAGAGAAGAAGATCAAAGAGAATGGTGGTGCGGTTGTCCTTACGGCTTAGGTTTATTGGGTAACTCTTAGTTATGATTTTGTTTCCAAATTAGTTTTGATGTCTTGTGGCGTTATTCGAAGTATTGGATTAATGTTATCAAACTTTGTATTTCAGTTTTCTTCACTTTGAACTCATTCCGATTTTGAATGTGTTTCTTGAATTATCATTTATCTTGAATGTTATACATTGTTAATTTTCGTAGTTTCTTGGGCTTTAGTTATCATTGTTGAAAGTGCTCCTTGCATTCCTTATAGATCTTACCCGACTCAATAACAAATAACTTGGTTGTCTCCATGGAAGCAGTTCAAGTTTTCCTCGAAAAATATCTGTTTTTACTAGTTTCTCATTCTAGTGTCAGCTCGGCTATTTGTTTTGATGTTGTTATTTACAAGACTTACTCCATATTCATTCTCAACCTTGCGAGATTTGGACACAACTATTTTGAAAAAAAATACCAATTTACACTCCTAAATTTGTTTTATTTGGGTGTCAATTGATACGGTTGCAAAAGTTTTGAGGTTTAAATTGAAGCCTTCATACAACAACAGGTGTGTAAGCAGAAGTTTTTCCAACTATTTAGCATAGTATTCATTGCTGCTGATTCGAGTATGTCTAATATTATCATTAGAGCTGTAAAGATGTGGTTCAACGTTCTGTCTCTAAGTTTCTTATCATGGTCATGTCTCTAATCCTTATTCCTCCTTATGAGAGGATTACTGATTTAATTGTTTGAACTAAGTACGTGATTTAAACTTGAATATCATGTCTTAGTGACTCAGAACAACACTGACAATTGATTTTTAATGTTGTTTTTTTGGTGTGTTTGTTGTGTGTGAGTTCTCTGTTCAATTATGTCCATTTGGTTTTAAACTGTTCCATCATTTAGATCCTATATAGTAATAATAGTAGGGAAAAACGAATGTAGTTCACTTGAACATACGAACATCCTTTTTAAGTTTTTACCTTGTGTATCAATGATTAATTTCTGTTCTGCAGCAGCTACTTCTTTAAATTCTAAAACTGCTCCATTTCTTTTCAGAAAGAAAAAGCTCCATTTTCAGTCCATTTTCCTTTCAAAGGTGCACGGTGCTGATGTTCTGTAATATTGTTTGA

mRNA sequence

ATGACGACCCGCTTCAAGAAGAACAGAAAGAAGCGCGGTCACGTGAGCGCCGGCCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCAGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTTGGTAAAGTTGGTATGAGGTACTTCCACAAGCTCCGTAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTTCCTCAGGAGGTGAAGGACAAGGCTTCTAAGGATAATGTCCCTTTGATTGATGTTACCCAGTTTGGAGAAGAAGATCAAAGAGAATGGTGGTGCGGTTGTCCTTACGGCTTAGGTTTATTGGAAAGAAAAAGCTCCATTTTCAGTCCATTTTCCTTTCAAAGGTGCACGGTGCTGATGTTCTGTAATATTGTTTGA

Coding sequence (CDS)

ATGACGACCCGCTTCAAGAAGAACAGAAAGAAGCGCGGTCACGTGAGCGCCGGCCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCAGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTTGGTAAAGTTGGTATGAGGTACTTCCACAAGCTCCGTAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTTCCTCAGGAGGTGAAGGACAAGGCTTCTAAGGATAATGTCCCTTTGATTGATGTTACCCAGTTTGGAGAAGAAGATCAAAGAGAATGGTGGTGCGGTTGTCCTTACGGCTTAGGTTTATTGGAAAGAAAAAGCTCCATTTTCAGTCCATTTTCCTTTCAAAGGTGCACGGTGCTGATGTTCTGTAATATTGTTTGA

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGEEDQREWWCGCPYGLGLLERKSSIFSPFSFQRCTVLMFCNIV

Homology

[Close]

BLAST of ClCG01G013450.2 vs. NCBI nr
Match: XP_008438796.1 (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >TYJ99181.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. NCBI nr
Match: XP_022994677.1 (60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosomal protein L27a-3-like [Cucurbita pepo subsp. pepo] >KAG6573080.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012266.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. NCBI nr
Match: XP_004152490.1 (60S ribosomal protein L27a-3 [Cucumis sativus] >KGN64340.1 hypothetical protein Csa_013715 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. NCBI nr
Match: XP_022136990.1 (60S ribosomal protein L27a-3-like [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. NCBI nr
Match: XP_038893626.1 (60S ribosomal protein L27a-3 [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKA+KDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKATKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 9.5e-53
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHG 104

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-51
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHG 104

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 151.8 bits (382), Expect = 6.2e-36
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFG 105
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + G
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSG 107

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy Swiss-Prot
Match: P14115 (60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 151.8 bits (382), Expect = 6.2e-36
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFG 105
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + G
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSG 107

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy Swiss-Prot
Match: P18445 (60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 151.8 bits (382), Expect = 6.2e-36
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFG 105
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + G
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSG 107

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy TrEMBL
Match: A0A5A7UL02 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003900 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy TrEMBL
Match: A0A6J1JWJ1 (60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy TrEMBL
Match: A0A0A0LQZ7 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046840 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy TrEMBL
Match: A0A6J1C5F8 (60S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. ExPASy TrEMBL
Match: A0A1S3AXX5 (60S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 104

[Close]

BLAST of ClCG01G013450.2 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 207.6 bits (527), Expect = 6.7e-54
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHG 104

[Close]

BLAST of ClCG01G013450.2 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-52
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFG 105
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHG 104

[Close]

BLAST of ClCG01G013450.2 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 9.2e-19
Identity = 50/82 (60.98%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1  MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
          MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1  MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61 FHKLRNKFYCPIVNVDKLWSLV 83
          FHKLRNKFYC IVN+DKLWS+V
Sbjct: 61 FHKLRNKFYCQIVNLDKLWSMV 63

The following BLAST results are available for this feature:

BLAST of ClCG01G013450.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438796.1	8.3e-54	100.00	PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ri...	[more]
XP_022994677.1	8.3e-54	100.00	60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosom...	[more]
XP_004152490.1	8.3e-54	100.00	60S ribosomal protein L27a-3 [Cucumis sativus] >KGN64340.1 hypothetical protein ...	[more]
XP_022136990.1	8.3e-54	100.00	60S ribosomal protein L27a-3-like [Momordica charantia]	[more]
XP_038893626.1	1.8e-53	99.04	60S ribosomal protein L27a-3 [Benincasa hispida]	[more]

BLAST of ClCG01G013450.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49637	9.5e-53	92.31	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=...	[more]
Q9LR33	4.0e-51	90.38	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=...	[more]
Q56K03	6.2e-36	66.36	60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3	[more]
P14115	6.2e-36	66.36	60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5	[more]
P18445	6.2e-36	66.36	60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3	[more]

BLAST of ClCG01G013450.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UL02	4.0e-54	100.00	60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1JWJ1	4.0e-54	100.00	60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE...	[more]
A0A0A0LQZ7	4.0e-54	100.00	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1C5F8	4.0e-54	100.00	60S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562...	[more]
A0A1S3AXX5	4.0e-54	100.00	60S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 S...	[more]

BLAST of ClCG01G013450.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70600.1	6.7e-54	92.31	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	2.8e-52	90.38	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	9.2e-19	60.98	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..103 e-value: 1.3E-8 score: 35.5
None	No IPR available	GENE3D	3.100.10.10		coord: 58..108 e-value: 3.1E-16 score: 61.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11721:SF21	60S RIBOSOMAL PROTEIN L27A-3	coord: 1..104
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..104
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 6..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G013450	ClCG01G013450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G013450.2-exon	ClCG01G013450.2-exon-CG_Chr01:26636224..26636297	exon
ClCG01G013450.2-exon	ClCG01G013450.2-exon-CG_Chr01:26637319..26637374	exon
ClCG01G013450.2-exon	ClCG01G013450.2-exon-CG_Chr01:26637458..26637768	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G013450.2-cds	ClCG01G013450.2-cds-CG_Chr01:26636224..26636297	CDS
ClCG01G013450.2-cds	ClCG01G013450.2-cds-CG_Chr01:26637319..26637374	CDS
ClCG01G013450.2-cds	ClCG01G013450.2-cds-CG_Chr01:26637458..26637768	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G013450.2	ClCG01G013450.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome