ClCG01G011530.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G011530.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein CLAVATA 3
Location	CG_Chr01: 19058802 .. 19062721 (-)
Sequence length	255
RNA-Seq Expression	ClCG01G011530.1
Synteny	ClCG01G011530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACAGTAACAAAAAGAAATAATAATAGGTTAGGTGAGAGATGATGATACATATTGGCGTTTGGAGTGTCACCATCTTAATTGCTTGTGTCATATTAAGTCACTTAATAATCATAATTTCTCCACAAATGGCTGCATGAGCAATCATTGACACTTCTATATACATATATATTACCTTAAACCTCTCTACTTTTCTTCTCATAATTCCCTATAACTTACACACAACAATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGGTTCCCTTCATCATCTCTCCTTTTTATTATTCCCAACCATATTTCAGTTTCTCATACCTTACCTCATTACATTAATTCTTCTACCTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTCTTTCCTTATAGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACGTAAGATCTTACAGACATCTATTATAAAAGTTTGATGTTGCATACAAAGGAAGATTAATGTTCAAATACTATGTTCTTGTCCCTAAAACAAAGTACACTATGTCCTTTTGACTAAGTATTGTCAATCTTATTTTAACTATAAAATTGAAATCTTTCAATTTTCAAATAGATATGTTTCTTTGCTCCTGTTCTATTACTAAATTTGTTATGGAATGCTTATTCTATTTTATGAGAAATTTTTTGTGTTTTTGTATTACCTACCCCTAATCTTTACACTATTTCTTTTTTTAAAAAATAAAGAATTGAAGATATTGACATGACAAGTAGCATATCTATAAAAAAAGGATCTATTTTATATATGTAGAGCTGAAAGGATGGTGTTGCGAATATATATATTTGAATAGTGTTGCAAAATAACTATGTTTTTTTTTTAAGAAAAAAATCTATTATTCTTAAAGGATCTTTTAATGTGACAACTAATTATAGAAATAGTACCATGTAGTATGAAAATAATTTCTATTTTATCTATATGAAGAATTGTTTTTATTTACAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

mRNA sequence

ATGGGGACAATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

ATGGGGACAATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Protein sequence

MGTIIIAAGELADVVAFPLSCPSLERFRSAGRYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of ClCG01G011530.1 vs. NCBI nr
Match: XP_038877536.1 (protein CLAVATA 3 [Benincasa hispida])

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 22  PSLERFRSAGRYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKP 81
           P + R     R MLQE KKEME+G DG KR  P  EWEQLRRVPSGPDPLHHNGGSPKKP
Sbjct: 48  PPVSRALQISRKMLQEMKKEMEEGVDGDKRWWPAGEWEQLRRVPSGPDPLHHNGGSPKKP 107

Query: 82  RTP 85
           RTP
Sbjct: 108 RTP 110

[Close]

BLAST of ClCG01G011530.1 vs. NCBI nr
Match: KAE8652825.1 (hypothetical protein Csa_022700, partial [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 44/62 (70.97%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 23  SLERFRSAGRYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPR 82
           S+ R     R ML E KKEME+G  GGKR     EWEQLRRVPSGPDPLHHNGGSPKKPR
Sbjct: 48  SVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPR 107

Query: 83  TP 85
           TP
Sbjct: 108 TP 109

[Close]

BLAST of ClCG01G011530.1 vs. NCBI nr
Match: KAA0054350.1 (protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 32 RYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
          R M+ E KKEME+G  GGKR R   EWEQLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 3  RKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of ClCG01G011530.1 vs. NCBI nr
Match: KAG6583691.1 (hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 32 RYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
          R ML+E  KE+E   DGG+RRRP VEW+QLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 46 RKMLREMVKELE--VDGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96

[Close]

BLAST of ClCG01G011530.1 vs. NCBI nr
Match: XP_015873114.2 (protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-05
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 35 LQERKKEMEKGADGGK-RRRPPVEWE-QLRRVPSGPDPLHHNGGSPKKPRTP 85
          L+E+K+E+ K A  G       + W+ QLR+VPSGPDPLHHNG SPKKPRTP
Sbjct: 36 LKEKKEELHKSASSGNGGNNYLMGWDYQLRKVPSGPDPLHHNGNSPKKPRTP 87

[Close]

BLAST of ClCG01G011530.1 vs. ExPASy TrEMBL
Match: A0A5A7UGG1 (Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001690 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.8e-14
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 32 RYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
          R M+ E KKEME+G  GGKR R   EWEQLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 3  RKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of ClCG01G011530.1 vs. ExPASy TrEMBL
Match: A0A6P3ZEB5 (protein CLAVATA 3 OS=Ziziphus jujuba OX=326968 GN=LOC107410225 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 35 LQERKKEMEKGADGGK-RRRPPVEWE-QLRRVPSGPDPLHHNGGSPKKPRTP 85
          L+E+K+E+ K A  G       + W+ QLR+VPSGPDPLHHNG SPKKPRTP
Sbjct: 36 LKEKKEELHKSASSGNGGNNYLMGWDYQLRKVPSGPDPLHHNGNSPKKPRTP 87

[Close]

BLAST of ClCG01G011530.1 vs. ExPASy TrEMBL
Match: A0A2G9GZD0 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 32 RYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
          +  L+ +K  ++ GA     +  P +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 39 KLFLEMKKMALKNGAPSYGNKEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of ClCG01G011530.1 vs. ExPASy TrEMBL
Match: A0A4U5LSR6 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000326310 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.5e-05
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 44  KGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
           +G+ GG      +E  +LR  PSGPDPLHHNGGSPKKPRTP
Sbjct: 129 RGSTGGTGNGEKLEVRELRAAPSGPDPLHHNGGSPKKPRTP 169

[Close]

BLAST of ClCG01G011530.1 vs. ExPASy TrEMBL
Match: A0A6A4MP60 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00009861 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.8e-05
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 35  LQERKKEME---KGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
           L+++K  ++   +G+   K    P+ WE LR+VPSGPDPLHHNGG+PKKP TP
Sbjct: 52  LKDKKNSLKVSLEGSSNTKYGEKPLSWE-LRKVPSGPDPLHHNGGTPKKPETP 103

The following BLAST results are available for this feature:

BLAST of ClCG01G011530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877536.1	2.6e-15	73.02	protein CLAVATA 3 [Benincasa hispida]	[more]
KAE8652825.1	1.8e-13	70.97	hypothetical protein Csa_022700, partial [Cucumis sativus]	[more]
KAA0054350.1	1.8e-13	79.25	protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucu...	[more]
KAG6583691.1	2.4e-13	79.25	hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015873114.2	4.1e-05	59.62	protein CLAVATA 3 [Ziziphus jujuba]	[more]

BLAST of ClCG01G011530.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G011530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGG1	8.8e-14	79.25	Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00...	[more]
A0A6P3ZEB5	2.0e-05	59.62	protein CLAVATA 3 OS=Ziziphus jujuba OX=326968 GN=LOC107410225 PE=4 SV=1	[more]
A0A2G9GZD0	2.6e-05	52.83	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 P...	[more]
A0A4U5LSR6	7.5e-05	63.41	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000326310 PE=4 SV=1	[more]
A0A6A4MP60	9.8e-05	52.83	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00009861 PE=4 SV=1	[more]

BLAST of ClCG01G011530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..59

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G011530	ClCG01G011530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G011530.1-exon	ClCG01G011530.1-exon-CG_Chr01:19058802..19058957	exon
ClCG01G011530.1-exon	ClCG01G011530.1-exon-CG_Chr01:19059511..19059600	exon
ClCG01G011530.1-exon	ClCG01G011530.1-exon-CG_Chr01:19062713..19062721	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G011530.1-cds	ClCG01G011530.1-cds-CG_Chr01:19058802..19058957	CDS
ClCG01G011530.1-cds	ClCG01G011530.1-cds-CG_Chr01:19059511..19059600	CDS
ClCG01G011530.1-cds	ClCG01G011530.1-cds-CG_Chr01:19062713..19062721	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G011530.1	ClCG01G011530.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
molecular_function	GO:0033612	receptor serine/threonine kinase binding