ClCG01G009440.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G009440.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	COX assembly mitochondrial protein
Location	CG_Chr01: 13198234 .. 13198605 (+)
Sequence length	372
RNA-Seq Expression	ClCG01G009440.1
Synteny	ClCG01G009440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGA

mRNA sequence

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGA

Coding sequence (CDS)

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGA

Protein sequence

MSSEESKLAETFSSVPNGVGPHCQKAKKEMLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF

Homology

[Close]

BLAST of ClCG01G009440.1 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 3.8e-44
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 27  KKEMLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPS 86
           KKEMLPTG A ICGDGGCERLEQALRECHKRLPEGPARRSACRHLNR+LAECLVATACPS
Sbjct: 3   KKEMLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACPS 62

Query: 87  EAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           EAEAVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 63  EAEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 99

[Close]

BLAST of ClCG01G009440.1 vs. NCBI nr
Match: XP_008459043.1 (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 uncharacterized protein E6C27_scaffold110G00780 [Cucumis melo var. makuwa] >TYK12262.1 uncharacterized protein E5676_scaffold302G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-41
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440.1 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 8.8e-41
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAE
Sbjct: 1   MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440.1 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-37
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           M+PTG+API GDGGCERLEQALR+CHKRLPEGPARRS C HLNR+ AECLVAT CP+EAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 123
           AVR+LCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of ClCG01G009440.1 vs. NCBI nr
Match: XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 4.5e-37
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           M+PTG+API GDGGCERLEQALR+CHKRLPEGPARRS C HLNR+ AECLVAT CP+EAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 123
           AVR+LCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of ClCG01G009440.1 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440.1 vs. ExPASy TrEMBL
Match: A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440.1 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.3e-41
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAE
Sbjct: 1   MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440.1 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           M+PTG+API GDGGCERLEQALR+CHKRLPEGPARRS C HLNR+ AECLVAT CP+EAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 123
           AVR+LCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of ClCG01G009440.1 vs. ExPASy TrEMBL
Match: A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.7e-37
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 30  MLPTGEAPICGD--GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSE 89
           MLPTGEAPI G   GGCERLEQALR+CH+R+P+GPARRSACRHLNR+LAECLVATACP+E
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 90  AEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 123
           AEAVR+LCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 108

[Close]

BLAST of ClCG01G009440.1 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 44  CERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALK 103
           C+RLE+AL +CH+R+PEGPARRS CRHLN+A AEC+VA ACP E+EAVRSLCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 104 RSQCEQAKFSLSFCLSSLQ 123
           R QCE A+ SLS CLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

The following BLAST results are available for this feature:

BLAST of ClCG01G009440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893663.1	3.8e-44	95.88	uncharacterized protein LOC120082530 [Benincasa hispida]	[more]
XP_008459043.1	4.0e-41	91.49	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 unc...	[more]
XP_004145445.1	8.8e-41	91.49	uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
XP_023542217.1	3.5e-37	86.02	uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]	[more]
XP_022994930.1	4.5e-37	86.02	uncharacterized protein LOC111490507 [Cucurbita maxima]	[more]

BLAST of ClCG01G009440.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G009440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLT3	1.9e-41	91.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C8S8	1.9e-41	91.49	uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=...	[more]
A0A0A0LYC1	4.3e-41	91.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1	[more]
A0A6J1K2P5	2.2e-37	86.02	uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507...	[more]
A0A6J1CN74	3.7e-37	85.26	uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of ClCG01G009440.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31175.1	1.8e-28	73.42	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G009440	ClCG01G009440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G009440.1-exon	ClCG01G009440.1-exon-CG_Chr01:13198234..13198605	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G009440.1-cds	ClCG01G009440.1-cds-CG_Chr01:13198234..13198605	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G009440.1	ClCG01G009440.1-protein	polypeptide