ClCG01G009020.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G009020.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LOB domain-containing protein
Location	CG_Chr01: 11254759 .. 11258393 (+)
Sequence length	627
RNA-Seq Expression	ClCG01G009020.1
Synteny	ClCG01G009020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGAAGTGTCCAATTGTGGATCAAAATTCCTATTGTTTACAAAAGGGAAGAGAGAGAGAGAGAGAGAGAGAGGGTGGTGGGACGCACGTGTCGGAGGATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGTCATCTCTCCTCTTAAATTTAATCACCTATAACACATATTAACTAACTTACCACCTTTCTTTCTTCATTTCCTCTAAACCCCATCTCTCTTTTTCATGTTTTTAAAACAAGCTGGAAGTTATATGTTCATGTTAACTTATCATTAAATAATGTTATGAGTTGTAGTCTTATCATTATCATTGCTGAATTAAAAAAAAAAAAAAAAAAATGGTTTGATTAAATAGTTTCTTTTTTTTTTTTTTCTCTCTCTCTTTTTGGGTTTCTCTTGGGCAGTGTATGAAAGTGGTTTAGGAATTTTGCAACAATCTTTGACCAAAACTATTCTAACTTTATCATGACTCTTTGGTTTGGCTGCAGTGTTCTTAGGCAGGATGTCAAAAGATTAATTATCAAAACTAATATGTATAAGGTTTAAATGTTTGAATCTCTTATTTATTTTATATTGTTGAATTAAAAATTAAAAAAGCTTTGATTTATTTGTTGTCATTTATTGTTACCAAAATACAGATTTTTTCTCCCTAAATATTTATTAAACTCTAAGAATTTTTAGATTATATATAGAATTTTTTTTCTTTTTTTTGACATTATGCAGAGTGGAGATCGAACATTTGAGATTGATATTATATGTCTAACGTGAGTAGAACTATGATCATTTTGACATTAGAACTTTATTGTCAACTCTCTTGTAAAAATGTTGACAAATTTTAGTTGAGTTACCATCACATGCTAATAACTACAAAGGAATCCATCACCAAAATATAATAATATAATTCAAATGTCAGGGATGTAATTGGAGTTTTAAAAGTTTCTAAGTAATACAAAGAATCAAATGTGTTCAATATATAATAACTAAATATATAATTAATATATTTAAATAAGATTATTTCTTTCTTTTTAATTAACAAATTTTAAAGAAAAGAAAATGGTGGCTATTGCTATCAACTTTAACGGTATAACCTTTCATTGCGACCGTTAATTAATTAATAAAATATTGTTGTGGAAAATACAAAAAGGTGTGTCTTTTCATTTAAGAAAAGCATCAAAATTTCTTTTTTTTTTTTCTTTTAAAAAAAAAGTTCAAACAACTCTTTGAAAAAAGAGTTAGTTTCAAGTCAAATTCATCATGTAGACCAAACAAATTAATGAAATTACAAAAGCAACCTTATAACTTTGGCTATTACTTTACAAACCTACTTGATTACAAATTTGTAAACATGTACCCTTTTATTAGTTTAAGAAAGTTAATATACACGTTAAATCAGGACATAGTTGACAACAAATGAAAATCACGGAGATCTTATTGTACTTATAACCAATTAAAATGAAGAACTTCAATTATAATATCATATAATTTTAATTTATAAGAAATGAAAAAAAAATAAAAATAAGTTGCTAACATGTTGGATTTTATTTATTTTTTTATTTTTTTTATCTTTTAGAAAAATATGTTAGTTTGGTTAAGAAAATATATAAAATGAATCAATTTTTCCATAAAAGCTATTAAGAAGAGAATATAGTTAACTAATAAATTTAAGGTCAACTTAGGTCATTAAAGGAGACTATAATTGATAAATTAATTAATTTTCAAATCTAAAATTTTAAATAAATTATCTCAAATCACATGCCTTTTGGATTTTAGCTTTTAACCTTCTCTCAATTTGCCTTGTACGTCATGTGATTTTTTTTTTTTTTTTTAAGTTTAATTAATAAATTTCTAGTTGTTAGAGGAAAAAAACATATATTTAAAGGTTTTTTTCAAATATAACAAAATGAAGCAAAATATTTACAAATATAGCAAAATTGTACTGTCTATCTGCGATAGATCCCGATAGATTGCAGTAGACTACTATCGTGACGCAGATAATAATCTATCGCGGTCTATCGCAGATAAACTGTGTATTTTGCTGTTAGTTGTAAATATTTTCAGCGATTTTGTCATTTAAGATAATTTTTTTATATTATATTTTAATTATTATTTTTTTAAAAAAAAAACATATATTTAATTTAGCTAAAAAAGAAGGGAAAAAATGTTTTATATGGACTTTTTGGGTTAATTGTGGGGAGCCACCCACCCCTTTTGCTTGTTTGTGGAGGGACAACCAACAAATAAAAACCAAATTAGAAACTACCATACCATCCTAACTTTTTATCATACAATTGAACTTAGAATATATTATAATATTGACCACTAGAATTTTGGTCTAAATTTTAGTTTGTTTGTTTACCTTCCAATATTTGTTTACTTTATAAAATAAACAATTAATTTGCATGTTGCCACATATTTTCTTTCAAATTTTTAACAAAAATTTATGATAAAAACATGTTATTTGTTTATTCCCTCTAATTACTGATACTTATTTAATAATCATTTGATATTTTTTAAAACTTAAATTTATAACCACTCTCCGCTTTGTTTAACTATATTTTTAACCAATGTTTTTGATAATTAACCCAAGTTTTGATAACTAAAAAAAATGAAAATAAATATTTTTTTTGTTTTTAAAATTTAGCTAGAAATTCAACTCTTTTATTCAAGAAATATGTAAATTATTATAAAAAAAATCCAAAACAAATAGGATTATTTGTTAAAAACAAAAAATAAAACCCAAATGGCTACTAAACCGGGCTTAAATGTCTAAGATTAGTTGAGAAAGTTTTTTTTTTTTTTTTTTCATTGCAAACTTTAGGGCCTAAAACAAAATATTTGAAAGTTAACTAACTAAACAACAATATTTAAAAAATTAGAGATGTAAACTCGAAATAAGGGAGGAAGTTCATAGATTAAAGAAAATATATATGAAGTTAACTTAAAATTTAATTTAACCATGATATTCTATTTTATTATAAGAAGATTCTAATCTAACTTGTAGGTTAAAAACAATTCTCCGATGAAACCACGGCTAAACAAAATTCTATCTCATAAGTTTAAATCTTCTTATTCTCATGTATATCTTTCTATTTCAAAAAATAAAAAATAAAAAAGTTGACGTTATTGTGAACGTTGCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATG

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAAGTGTCCAATTGTGGATCAAAATTCCTATTGTTTACAAAAGGGAAGAGAGAGAGAGAGAGAGAGAGAGGGTGGTGGGACGCACGTGTCGGAGGATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATG

Coding sequence (CDS)

AGAGAGAGAGAGAGAGAGAGAAGTGTCCAATTGTGGATCAAAATTCCTATTGTTTACAAAAGGGAAGAGAGAGAGAGAGAGAGAGAGAGGGTGGTGGGACGCACGTGTCGGAGGATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATG

Protein sequence

RERERERSVQLWIKIPIVYKREERERERERVVGRTCRRMKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSM

Homology

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BLAST of ClCG01G009020.1 vs. NCBI nr
Match: XP_038895183.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 323.9 bits (829), Expect = 9.9e-85
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDM VDQA+GDSM
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMAVDQAIGDSM 169

[Close]

BLAST of ClCG01G009020.1 vs. NCBI nr
Match: XP_004145462.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical protein Csa_006984 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 3.2e-83
Identity = 164/171 (95.91%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSR MFEMDMVVDQAM +SM
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESM 169

[Close]

BLAST of ClCG01G009020.1 vs. NCBI nr
Match: XP_022927419.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB domain-containing protein 4-like [Cucurbita maxima] >XP_023520045.1 LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo] >KAG7019437.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316.6 bits (810), Expect = 1.6e-82
Identity = 161/172 (93.60%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSV 172

[Close]

BLAST of ClCG01G009020.1 vs. NCBI nr
Match: KAG6583812.1 (LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.5 bits (807), Expect = 3.5e-82
Identity = 161/172 (93.60%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDNLQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSV 172

[Close]

BLAST of ClCG01G009020.1 vs. NCBI nr
Match: XP_008459081.1 (PREDICTED: LOB domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 315.5 bits (807), Expect = 3.5e-82
Identity = 162/171 (94.74%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSPSNSGSPSSRL+GS SR MFEMDMVVDQA+ DSM
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSM 169

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.9e-63
Identity = 126/170 (74.12%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 42  ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 101
           E+ RKQG    A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQ
Sbjct: 3   ESSRKQG---AASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 62

Query: 102 ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 161
           ELPIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVR
Sbjct: 63  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 122

Query: 162 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMF-EMDMVVDQAMGDSM 210
           Q+  F  +GL P SPS+SGSPSS+ +  Q ++ MF  MD+V + ++G+SM
Sbjct: 123 QSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESM 169

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 182.2 bits (461), Expect = 6.1e-45
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 49  GGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 108
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 109 GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 162
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-39
Identity = 83/133 (62.41%), Postives = 100/133 (75.19%), Query Frame = 0


Query: 50  GTGAAPCAACKLLRRRC-GEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 109
           G   +PCA CKLLRR+C  + CVFAPYFPA +P+KFA VHK+FGASNVNKMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 110 GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR---QTAP 169
            DAV S+VYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R      T P
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 170 FSNYGLSPTSPSN 179
                 + T PSN
Sbjct: 129 PPYTASTVTFPSN 141

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BLAST of ClCG01G009020.1 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.0e-36
Identity = 78/140 (55.71%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 54  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 113
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 114 SLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSP 173
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 174 TSPSNSGSPSSRLMGSQSRP 194
           ++    G+    +   Q  P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 6.8e-36
Identity = 94/213 (44.13%), Postives = 119/213 (55.87%), Query Frame = 0


Query: 24  RERERERVVGRTCRR-------MKTENGRKQGGGTGA----APCAACKLLRRRCGEECVF 83
           RERER   +G+  +R             R   G  G      PCAACKLLRRRC +EC F
Sbjct: 3   RERERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQECPF 62

Query: 84  APYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVG 143
           +PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +SLVYEAN R+RDPVYGC+G
Sbjct: 63  SPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMG 122

Query: 144 AISSLQQQIDALQTQLALAQAEVVHLRVR------------QTAPFSNYG------LSPT 203
           AIS+LQQQ+ ALQ +L   ++E++  + R            Q A F N G        P 
Sbjct: 123 AISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPPPQ 182

Query: 204 SPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGD 208
            P+    P++    S S  +F      D   G+
Sbjct: 183 RPTTPPQPTTAHPPSPSSCVFSQPTTRDLEYGN 215

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy TrEMBL
Match: A0A0A0LYG0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 164/171 (95.91%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSR MFEMDMVVDQAM +SM
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESM 169

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy TrEMBL
Match: A0A6J1KP63 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.7e-83
Identity = 161/172 (93.60%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSV 172

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy TrEMBL
Match: A0A6J1EHY2 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111434249 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.7e-83
Identity = 161/172 (93.60%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSV 172

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy TrEMBL
Match: A0A1S3CAK2 (LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.7e-82
Identity = 162/171 (94.74%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 39  MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 98
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 99  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 158
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 159 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSM 210
           RVRQTA FSNYGLSPTSPSNSGSPSSRL+GS SR MFEMDMVVDQA+ DSM
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSM 169

[Close]

BLAST of ClCG01G009020.1 vs. ExPASy TrEMBL
Match: A0A6A2ZAV1 (LOB domain-containing protein 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110962pilonHSYRG00022 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.7e-72
Identity = 139/169 (82.25%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 42  ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 101
           E+GRKQG    A+PCAACKLLRRRC ++CVFAPYFPAD+PHKFANVHKVFGASNVNKMLQ
Sbjct: 3   ESGRKQG---AASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQ 62

Query: 102 ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 161
           +LP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAE +HLRVR
Sbjct: 63  DLPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEAMHLRVR 122

Query: 162 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQA-MGDSM 210
           QT PFSN+G  P SPS+SGSPSSRLMGSQ++P+F+MDMV+DQA +G+SM
Sbjct: 123 QTVPFSNHGFGPASPSHSGSPSSRLMGSQAKPIFDMDMVLDQASLGESM 168

[Close]

BLAST of ClCG01G009020.1 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-64
Identity = 126/170 (74.12%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 42  ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 101
           E+ RKQG    A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQ
Sbjct: 3   ESSRKQG---AASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 62

Query: 102 ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 161
           ELPIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVR
Sbjct: 63  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 122

Query: 162 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMF-EMDMVVDQAMGDSM 210
           Q+  F  +GL P SPS+SGSPSS+ +  Q ++ MF  MD+V + ++G+SM
Sbjct: 123 QSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESM 169

[Close]

BLAST of ClCG01G009020.1 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-46
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 49  GGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 108
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 109 GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 162
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of ClCG01G009020.1 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 83/133 (62.41%), Postives = 100/133 (75.19%), Query Frame = 0


Query: 50  GTGAAPCAACKLLRRRC-GEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 109
           G   +PCA CKLLRR+C  + CVFAPYFPA +P+KFA VHK+FGASNVNKMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 110 GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR---QTAP 169
            DAV S+VYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R      T P
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 170 FSNYGLSPTSPSN 179
                 + T PSN
Sbjct: 129 PPYTASTVTFPSN 141

[Close]

BLAST of ClCG01G009020.1 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-37
Identity = 78/140 (55.71%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 54  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 113
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 114 SLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSP 173
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 174 TSPSNSGSPSSRLMGSQSRP 194
           ++    G+    +   Q  P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

[Close]

BLAST of ClCG01G009020.1 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-37
Identity = 78/140 (55.71%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 54  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 113
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 114 SLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSP 173
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 174 TSPSNSGSPSSRLMGSQSRP 194
           ++    G+    +   Q  P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

The following BLAST results are available for this feature:

BLAST of ClCG01G009020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895183.1	9.9e-85	96.49	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
XP_004145462.1	3.2e-83	95.91	LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical prote...	[more]
XP_022927419.1	1.6e-82	93.60	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB do...	[more]
KAG6583812.1	3.5e-82	93.60	LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008459081.1	3.5e-82	94.74	PREDICTED: LOB domain-containing protein 4 [Cucumis melo]	[more]

BLAST of ClCG01G009020.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	2.9e-63	74.12	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	6.1e-45	73.45	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SA51	1.7e-39	62.41	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q9FML4	4.0e-36	55.71	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
Q8L5T5	6.8e-36	44.13	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of ClCG01G009020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYG0	1.5e-83	95.91	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV...	[more]
A0A6J1KP63	7.7e-83	93.60	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252...	[more]
A0A6J1EHY2	7.7e-83	93.60	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114342...	[more]
A0A1S3CAK2	1.7e-82	94.74	LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=...	[more]
A0A6A2ZAV1	2.7e-72	82.25	LOB domain-containing protein 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110...	[more]

BLAST of ClCG01G009020.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	2.1e-64	74.12	LOB domain-containing protein 4	[more]
AT2G30130.1	4.3e-46	73.45	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	1.2e-40	62.41	ASYMMETRIC LEAVES 2-like 9	[more]
AT5G63090.2	2.8e-37	55.71	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	2.8e-37	55.71	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..190
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 51..198
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 51..198
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 55..152 e-value: 4.1E-43 score: 146.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 54..155 score: 26.47366

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G009020	ClCG01G009020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G009020.1-exon	ClCG01G009020.1-exon-CG_Chr01:11254759..11255061	exon
ClCG01G009020.1-exon	ClCG01G009020.1-exon-CG_Chr01:11258070..11258393	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G009020.1-cds	ClCG01G009020.1-cds-CG_Chr01:11254759..11255061	CDS
ClCG01G009020.1-cds	ClCG01G009020.1-cds-CG_Chr01:11258070..11258393	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G009020.1	ClCG01G009020.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010087	phloem or xylem histogenesis
molecular_function	GO:0000976	transcription cis-regulatory region binding