ClCG00G000260.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG00G000260.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	replication factor C subunit 2
Location	CG_Chr00: 332699 .. 352710 (-)
Sequence length	1442
RNA-Seq Expression	ClCG00G000260.1
Synteny	ClCG00G000260.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGTACTTCTCCTTCTCTAATCCCTTCCGAAGTTTAGTTATGTTTCATGGGTTTAACTTAATTTCTAGTCTAACTGTTAACTTGTTTACGACGTGGTACTGAAAATGGACTTTATATTTAGTTATGGGAAGTAGAAAATCATGCAGCTTGAACGTCTTTTCTTTCTCTTCTTTGAGCTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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CCGAGATAAATAAAAGGTGGAACCTCCAGCTTGCAGTTAAACTTTGATGCCATGGCCAAAAGTTTGGAGTCGTCATCATTAATACCACAACGGTTGGATTTCTGCCTATTAACTTTTAGTCCTGAAATTCTTTCAAAAACTTTCACTGTCTTCATGAGAATTCCAATATTGAATCATCATATATATATATATATGATGAAAACCACAGCTTTCACTGTCTTCATGCGTGTGTATTCTTTACAAAAATGGTAAAGTTTCATCAGCGCGTTGAAGTATTGACACATGTACCTTGGTTGTCCCAACTGTGAATCCTTCAAACAATCCTTTAGAATGAATGTTTGCCACTAAAACAGTAAAAACTTCACTGACCAAGAGAAAAAGAAAGAGTCACCTTGACGGATACCTCTTGGTCGCCCATATATGAAAGATAGAGAATTTAGGATTGTGAATGGATCCATTTATCCATTTGATCCAAAGAGGATCAAACCGCTTTGCCTTCAAAATTTATCCCAAAAGATCCCGATCCACCGAATCATAGGCTTTCTTGATGTCTAGTTTGAGGATCTAGCCTTGTCTTCTTTTAAATTTATAGTCTTCCACAATTTCATTTGTAATCAAAACGGGATACAGAATGCGTCTTCCTTCAATAAATGCACTTTGTGAAAAGATAACTATTCTTTGGTCCATTTGGATTGAAAAGAAAAATATGTTATTCAAAGATAGTGTAAAAGTACTGATACAATTAAAGTTACCAGCTTTTTGGTTGATTGGAAATTTAACATAGTATTGGTCTTGCATTCGAACCCCGTAATGTTATTTCCTTCCTAATTAATATTGATTTTCAAGGGTTTTTACAAATTTTCAAGTCCACGAGTGAGGGATGTGTTGAAGTTGAAGTATTGATATAATTAAATTTACCATAACTCCTTAGCTTAAGCTTTTGGGTTGTTTGGGTCACTAATGTAAATCTAAATGCCTTGTCATTTGGCCTTCCTTTCAATACTCACTTTTTGTTAGGAACCCTTCTTGTGTCATATCTATACGTATATGTTTGTATATGTATGTATGTATATGAAAACAGACTAATGCTCAAGTATATAATAAGTTTCAAGAGGATAGAGAAATTGCGACAAGACAAAAGGAGAAGAAATACTATTGAGATACAAAGATGAGAAGACATATAAAAGCAAATACTTAAAACCTAACGAACCAGCTCCAAAATGGAAACCAAAACTAGAGAACACATAAACTATATGTATGTATGTATATGGATAGTATATGTATATGTATGTATATATGTAACATCAATTTCTTTTCAACATTTAGGAATTGATACATATGCATACTTTCCTAGCATTTCTTTTTTATCCAACGCTGAAGGTATGATTTTTTTTTTTTTTTTTTTTAAATTAATTTTTTTTTTAATTTTTAAATACTAGTGTTGGAGATCATGGCATCTATCGAATGCTAAGTCTATCAACACCTTTGGAAGCTGGATCTAATGCTCAAGCATCTATTGGAATACCCTTGAAAATGAAGTGCACATTTGGGATCTTTTTCAGTTGGAAACAAACTAGACTAGCATGTAAACAATGTTTTATATTTGAAAAGTAAGAAAGGCTTGTGATGGAAGCGATAGTCTTTCACAACATTGTTAAAGAGTGCTAAATTATGAAAGGCTAACTTGGAAAATTGCGTTCTTAAGAGTGCTTAATGCTCACATTTTATAATAAGTCTTTATTCTCTTCATTTGAAAAACCATAAACATTTAGATCATTTTACCAGATGAATACATGAACAATCTACGGGTAGAAAGGTTATAATTGTGTACTAAAATCATCAGGGAGTTAAGCTCGTTGATCTCCTTTAGCAATGATTGAGGCACTTGTCTAATATGTGGGGTTTTTTTTCTTGTTACTTTATGACTGAATTAATTTCTCTCAATTGAATTTCTTCCTTCAAAATTTTAGTCTCTACAATGTCACATGCCTGACCATTGTCCCCTCCTAGTGGAGACCAGTTTCTGCCTGTTGAGTTACTGTCCATTTTAATTAACAATAATTTGAGAAAGAAGTGGCTCAACTACTTGAAACTTTAATGGGAAGTTGTTGGGGAAATGTGGAAGTCTATGCAGGTTTTGGTTGAATTTCTCTAGAAAGCGCAAGTTTTATTAATGAAAAAAATCTTATTTCGTGGAACAAAGAGGTAAATGGCATAATAGTCCTCTTTCATGTATGCATCGTACAACTTTTTTTATCCCATGGATATAGTAATCTAAATAATCTTCAGCGGTTTTTAATAACGAAAAGCAAAAAGTTCGCTCTTTGGAGGGAAAAGTTGGCTCTTGCCGATCTTTTATGGAATGCGAGGGGCTTCAAGTCTCTGGCCAGAAGAATCAATGCTAAAGTTACTTTACTCATATTTCCGACTTTGTCATTCTCATTTCTCACTAAAAAGACAAAGCCCATTAGTACGAGGGTTATCAACCCCATTTGGGGTTCTAGAGGTGTTGAATGGACTTCTTAAGATGACGTAGGTTCCTTTTGGTAGCATTGAATTCTTTTTTCTTTGGAAGTACTTACCTAAATAGATAAAAGGTATGCTCTTTCTCTATTTTAGTGGTTATCTTAGGCGAATGAAGTTTGCTGGTGCCTTGGTGGGTCTTAGGCATCTGTCTTAGGCTAGCTAACAAAGAGGAGACACATTTTGAAGGGAATTATATGACTTTCAACTTATATCACTTGATGAAAGCCGGTTTCTTTTACAACAAAACTAATGTGTCTTTTAGCAGTTCATTGAGTTGATTAAAGCATGATCTTGGGTGAATAGATCTCTGACTGTATTTTTACTACTCGGGTTGATAAGTTCTCCCTTTCTTTATTCCAAATACAAAAGGAACATGCTCAGGTAGTTTAGAAATGATTATTGTTGAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCCTATCACGTGTTTTTATCTTTCCTTGTCTTTTATAAACTCAGAAAATTTCATCTTGACATGCTTGTTGATTCCCCAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATGTTAAAACCTGATTCATCATTTGATCATACCAGATCAAGCAAGTACTCACTCTTTTGATGCATTGCAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTGAGACTGCAAAAGCGCCATGAGTAGTCAACATGTAGAGGCTGCTCAAAATTTGGCTCAAAGGGGAGGTAGTATGAATGTAAACATCTATGTTCCTTAGGATATTAGCTTTATATTTTCGTAAGATGTAGTCAGATTGAGCACAAAATTGGGTATGTTACTATCATCTTGCTAATGTTTTAGGCCAATAGCAGTCTTATCAAGGTTTCTCNTGCTCAGGTAGTTTAGAAATGATTATTGTTGAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCCTATCACGTGTTTTTATCTTTCCTTGTCTTTTATAAACTCAGAAAATTTCATCTTGACATGCTTGTTGATTCCCCAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATGTTAAAACCTGATTCATCATTTGATCATACCAGATCAAGCAAGTACTCACTCTTTTGATGCATTGCAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTGAGACTGCAAAAGCGCCATGAGTAGTCAACATGTAGAGGCTGCTCAAAATTTGGCTCAAAGGGGAGGTAGTATGAATGTAAACATCTATGTTCCTTAGGATATTAGCTTTATATTTTCGTAAGATGTAGTCAGATTGAGCACAAAATTGGGTATGTTACTATCATCTTGCTAATGTTTTAGGCCAATAGCAGTCTTATCAAGGTTTCTCTCCCCCGCCCCACAGTAGCCAGATACAACCCTTGACATGTCCATGATTCACAATTGTTAAAAGCTTTTGGTTTCAAATGTCTAGATCTAATGACACAACCTCGAGTATTTGTCGATATCTCAGTACATTGACACAAAGAGCACGAGCGCAAATACAGATCTGGTGATATGTATTTTGATGTTTTGTTAATTCCGCATCAGTTTCATACAAAAGCATATCTAAAGTCAATAATAGTCTGGATTAGTTACAATTTGCTTACTCACTGCATTGAATACATCTCTCACAAGTGCTGGATTCGTATTCAATTTGTATGCAAGTGTGCGATATATGTTGGACATGGACACGTTATTGAAACTGAAGTGTCCATAACTTTGAAGGGTCTGTTTTGAGTATTCTGCTGAACTTTATGGTTACAACAGGGGGGAAATGCTCATATCTACACCAACAATGGCTGACAAATGAAGCTTGTAGAGGG

mRNA sequence

ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTAGTTTAGAAATGATTATTGTTGAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTGAGACTGCAAAAGCGCCATGAGTAGTCAACATGTAGAGGCTGCTCAAAATTTGGCTCAAAGGGGAGGGGGGAAATGCTCATATCTACACCAACAATGGCTGACAAATGAAGCTTGTAGAGGG

Coding sequence (CDS)

ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTAGTTTAGAAATGATTATTGTTGAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTGAGACTGCAAAAGCGCCATGA

Protein sequence

MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRSLEMIIVENMKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP

Homology

[Close]

BLAST of ClCG00G000260.1 vs. NCBI nr
Match: XP_038905731.1 (replication factor C subunit 2 [Benincasa hispida])

HSP 1 Score: 553.5 bits (1425), Expect = 1.6e-153
Identity = 286/325 (88.00%), Postives = 288/325 (88.62%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSSYDMPWVEKYRPS VVDIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSSYDMPWVEKYRPSTVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASD---------------------------------- 120
           TSILALAHELLGPNYKEGVLELNASD                                  
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKMVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 292
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

[Close]

BLAST of ClCG00G000260.1 vs. NCBI nr
Match: XP_008448956.1 (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 548.5 bits (1412), Expect = 5.3e-152
Identity = 281/325 (86.46%), Postives = 288/325 (88.62%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASD---------------------------------- 120
           TSILALAHELLGPNYKEGVLELNASD                                  
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 292
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

[Close]

BLAST of ClCG00G000260.1 vs. NCBI nr
Match: TYK19440.1 (replication factor C subunit 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 546.2 bits (1406), Expect = 2.6e-151
Identity = 280/324 (86.42%), Postives = 287/324 (88.58%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASD---------------------------------- 120
           TSILALAHELLGPNYKEGVLELNASD                                  
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 291
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

[Close]

BLAST of ClCG00G000260.1 vs. NCBI nr
Match: XP_022152824.1 (replication factor C subunit 2 [Momordica charantia])

HSP 1 Score: 546.2 bits (1406), Expect = 2.6e-151
Identity = 280/324 (86.42%), Postives = 287/324 (88.58%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSSG+SSSYDMPWVEK+RP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 3   SSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62

Query: 62  SILALAHELLGPNYKEGVLELNASD----------------------------------D 121
           SILALAHELLGPNYKEGVLELNASD                                  D
Sbjct: 63  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLMV
Sbjct: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVK
Sbjct: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 292
           NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302

[Close]

BLAST of ClCG00G000260.1 vs. NCBI nr
Match: XP_004147970.1 (replication factor C subunit 2 [Cucumis sativus] >KGN55951.1 hypothetical protein Csa_010919 [Cucumis sativus])

HSP 1 Score: 544.3 bits (1401), Expect = 1.0e-150
Identity = 279/325 (85.85%), Postives = 286/325 (88.00%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASD---------------------------------- 120
           TSILALAHELLGPNYKEGVLELNASD                                  
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 292
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy Swiss-Prot
Match: Q9CAM7 (Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 3.6e-143
Identity = 264/327 (80.73%), Postives = 279/327 (85.32%), Query Frame = 0


Query: 1   MASSSGSSS--SYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRPS+VVDIVGNEDAV RLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASD-------------------------------- 120
           KTTSILALAHELLG NYKE VLELNASD                                
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 --DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILAR 180
             DSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+IL R
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 292
           HVKN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy Swiss-Prot
Match: Q7XRX1 (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 PE=2 SV=2)

HSP 1 Score: 492.7 bits (1267), Expect = 4.5e-138
Identity = 251/327 (76.76%), Postives = 275/327 (84.10%), Query Frame = 0


Query: 2   ASSSGS---SSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTG 61
           ASSS +   + +YD+PWVEKYRP+RV D+ GN DAV RLQ IARDGNMPNLILSGPPGTG
Sbjct: 3   ASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTG 62

Query: 62  KTTSILALAHELLGPNYKEGVLELNASD-------------------------------- 121
           KTTSIL+LAHELLGP+Y+E VLELNASD                                
Sbjct: 63  KTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILD 122

Query: 122 --DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILAR 181
             DSMT+GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL+DQEIL R
Sbjct: 123 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 182

Query: 182 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 241
           LM+V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPL
Sbjct: 183 LMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPL 242

Query: 242 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 292
           HVKN+V+NVL+GKFD+AC+ LKQLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETG
Sbjct: 243 HVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETG 302

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy Swiss-Prot
Match: P35250 (Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3)

HSP 1 Score: 373.6 bits (958), Expect = 3.1e-102
Identity = 186/320 (58.13%), Postives = 233/320 (72.81%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+  Y++PWVEKYRP ++ +IVGNED V RL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 25  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84

Query: 62  SILALAHELLGPNYKEGVLELNASD----------------------------------D 121
           SIL LA  LLGP  K+ +LELNAS+                                  D
Sbjct: 85  SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 144

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RLM 
Sbjct: 145 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMN 204

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           V++ E+VPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF F+N +NVFKVCD+PHPL VK
Sbjct: 205 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 264

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 288
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 265 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 324

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy Swiss-Prot
Match: Q05B83 (Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 6.8e-102
Identity = 186/320 (58.13%), Postives = 233/320 (72.81%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+  Y++PWVEKYRP ++ +IVGNED V RL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 23  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82

Query: 62  SILALAHELLGPNYKEGVLELNASD----------------------------------D 121
           SIL LA  LLGP  K+ VLELNAS+                                  D
Sbjct: 83  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +ILARL+ 
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           V++ EKV Y  +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N +NVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 288
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy Swiss-Prot
Match: Q641W4 (Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.2e-101
Identity = 183/317 (57.73%), Postives = 233/317 (73.50%), Query Frame = 0


Query: 5   SGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSIL 64
           S ++  Y++PWVEKYRP ++ +IVGNED V RL+V AR+GN+PN+I++GPPGTGKTTSIL
Sbjct: 23  SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82

Query: 65  ALAHELLGPNYKEGVLELNASD----------------------------------DSMT 124
            LA  LLGP  K+ VLELNAS+                                  DSMT
Sbjct: 83  CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142

Query: 125 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQ 184
            GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L+RLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202

Query: 185 AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVV 244
            EKVPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N +NVFKVCD+PHPL VK ++
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262

Query: 245 RNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 288
           ++ ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy TrEMBL
Match: A0A1S3BLV0 (replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490969 PE=3 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 2.6e-152
Identity = 281/325 (86.46%), Postives = 288/325 (88.62%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASD---------------------------------- 120
           TSILALAHELLGPNYKEGVLELNASD                                  
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 292
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy TrEMBL
Match: A0A5D3D7L4 (Replication factor C subunit 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00910 PE=3 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 1.3e-151
Identity = 280/324 (86.42%), Postives = 287/324 (88.58%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASD---------------------------------- 120
           TSILALAHELLGPNYKEGVLELNASD                                  
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 291
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy TrEMBL
Match: A0A6J1DH57 (replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE=3 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 1.3e-151
Identity = 280/324 (86.42%), Postives = 287/324 (88.58%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSSG+SSSYDMPWVEK+RP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 3   SSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62

Query: 62  SILALAHELLGPNYKEGVLELNASD----------------------------------D 121
           SILALAHELLGPNYKEGVLELNASD                                  D
Sbjct: 63  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLMV
Sbjct: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVK
Sbjct: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 292
           NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy TrEMBL
Match: A0A0A0L763 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 4.8e-151
Identity = 279/325 (85.85%), Postives = 286/325 (88.00%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASD---------------------------------- 120
           TSILALAHELLGPNYKEGVLELNASD                                  
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 292
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

[Close]

BLAST of ClCG00G000260.1 vs. ExPASy TrEMBL
Match: A0A6J1E9R2 (replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=3 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.6e-149
Identity = 279/326 (85.58%), Postives = 286/326 (87.73%), Query Frame = 0


Query: 1   MASSSG-SSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGK 60
           MASSSG SSSSYDMPWVEKYRPS+V DIVGNE+AV RLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEGVLELNASD--------------------------------- 120
           TTSILALAHELLGPNYK+GVLELNASD                                 
Sbjct: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 -DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARL 180
            DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEIL RL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 292
           VKN+VRNVLEGKFDDACA LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

[Close]

BLAST of ClCG00G000260.1 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 509.6 bits (1311), Expect = 2.5e-144
Identity = 264/327 (80.73%), Postives = 279/327 (85.32%), Query Frame = 0


Query: 1   MASSSGSSS--SYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRPS+VVDIVGNEDAV RLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASD-------------------------------- 120
           KTTSILALAHELLG NYKE VLELNASD                                
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 --DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILAR 180
             DSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+IL R
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 292
           HVKN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

[Close]

BLAST of ClCG00G000260.1 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 162.5 bits (410), Expect = 7.6e-40
Identity = 109/312 (34.94%), Postives = 147/312 (47.12%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ VR L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASD-----------------------------------------DSMTT 133
             YK  VLELNASD                                         DSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQA 193
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVR 253
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 254 NVLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 281
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

[Close]

BLAST of ClCG00G000260.1 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-39
Identity = 99/324 (30.56%), Postives = 162/324 (50.00%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99

Query: 74  NYKEGVLELNASD-----------------------------------DSMTTGAQQALR 133
            Y+  +LELNASD                                   D+MT  AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159

Query: 134 RTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVP 193
           R +E Y+ +TRFAL  N  +KII  +QSRC   RF+ L    +  RL  V++AE++    
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219

Query: 194 EGLEAIIFTADGDMRQALNNLQATFSG--------FRFVNQDNVFKVCDQPHPLHVKNVV 253
            GL A++  ++GDMR+ALN LQ+T            + + +++V+     P P  ++ + 
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279

Query: 254 RNVLEGKFDDACAGLKQLYD-LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMR 294
             +L   FD+    + ++    G +  DI+  +   I    M   ++++ + +      R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339

[Close]

BLAST of ClCG00G000260.1 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-37
Identity = 106/311 (34.08%), Postives = 144/311 (46.30%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ VR L    +  + P+++  GPPGTGKTT+ LA+AH+L   
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF-- 69

Query: 74  NYKEGVLELNASD-----------------------------------------DSMTTG 133
               GVLELNASD                                         DSMT  
Sbjct: 70  ----GVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 134 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQAE 193
           AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 194 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 253
            +    E L  +   + GD+R+A+  LQ+    F                PL V N +  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 254 VLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHMR 281
             + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       R
Sbjct: 250 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKR 309

[Close]

BLAST of ClCG00G000260.1 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-36
Identity = 100/280 (35.71%), Postives = 133/280 (47.50%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ VR L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASD-----------------------------------------DSMTT 133
             YK  VLELNASD                                         DSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQA 193
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVR 251
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

The following BLAST results are available for this feature:

BLAST of ClCG00G000260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905731.1	1.6e-153	88.00	replication factor C subunit 2 [Benincasa hispida]	[more]
XP_008448956.1	5.3e-152	86.46	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo]	[more]
TYK19440.1	2.6e-151	86.42	replication factor C subunit 2 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022152824.1	2.6e-151	86.42	replication factor C subunit 2 [Momordica charantia]	[more]
XP_004147970.1	1.0e-150	85.85	replication factor C subunit 2 [Cucumis sativus] >KGN55951.1 hypothetical protei...	[more]

BLAST of ClCG00G000260.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAM7	3.6e-143	80.73	Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1	[more]
Q7XRX1	4.5e-138	76.76	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 ...	[more]
P35250	3.1e-102	58.13	Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3	[more]
Q05B83	6.8e-102	58.13	Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1	[more]
Q641W4	1.2e-101	57.73	Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1	[more]

BLAST of ClCG00G000260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLV0	2.6e-152	86.46	replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349096...	[more]
A0A5D3D7L4	1.3e-151	86.42	Replication factor C subunit 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1DH57	1.3e-151	86.42	replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE...	[more]
A0A0A0L763	4.8e-151	85.85	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV...	[more]
A0A6J1E9R2	1.6e-149	85.58	replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=...	[more]

BLAST of ClCG00G000260.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63160.1	2.5e-144	80.73	replication factor C 2	[more]
AT1G21690.1	7.6e-40	34.94	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	3.8e-39	30.56	replication factor C subunit 3	[more]
AT1G21690.4	2.7e-37	34.08	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	1.0e-36	35.71	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 7..85 e-value: 3.3E-24 score: 87.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 86..134 e-value: 4.7E-13 score: 51.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..199
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 201..286 e-value: 2.9E-20 score: 72.5 coord: 350..435 e-value: 2.9E-20 score: 72.5
None	No IPR available	GENE3D	1.20.272.10		coord: 201..290 e-value: 1.7E-29 score: 103.6 coord: 350..442 e-value: 1.6E-29 score: 103.7
None	No IPR available	GENE3D	1.10.8.60		coord: 291..349 e-value: 8.6E-16 score: 59.2 coord: 137..200 e-value: 4.4E-20 score: 73.0
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 295..444
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 7..87 coord: 295..444
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 7..87 coord: 87..291
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 87..291
None	No IPR available	CDD	cd00009	AAA	coord: 28..131 e-value: 1.3495E-13 score: 66.0155
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 136..198 e-value: 5.69706E-19 score: 78.7249
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 288..347 e-value: 3.94041E-15 score: 67.5541
IPR000523	Magnesium chelatase ChlI-like, catalytic domain	PFAM	PF01078	Mg_chelatase	coord: 26..95 e-value: 4.0E-5 score: 23.1
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 349..440
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 200..290

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG00G000260	ClCG00G000260	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:332699..332754	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:333317..333472	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:333545..333739	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:333821..333984	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:334204..334291	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:334364..334558	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:334640..334768	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:340119..340314	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:341474..341580	exon
ClCG00G000260.1-exon	ClCG00G000260.1-exon-CG_Chr00:352555..352710	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG00G000260.1-three_prime_utr	ClCG00G000260.1-three_prime_utr-CG_Chr00:332699..332754	three_prime_UTR
ClCG00G000260.1-three_prime_utr	ClCG00G000260.1-three_prime_utr-CG_Chr00:333317..333361	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:333362..333472	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:333545..333739	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:333821..333984	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:334204..334291	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:334364..334558	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:334640..334768	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:340119..340314	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:341474..341580	CDS
ClCG00G000260.1-cds	ClCG00G000260.1-cds-CG_Chr00:352555..352710	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG00G000260.1	ClCG00G000260.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003689	DNA clamp loader activity