ChyUNG229970.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChyUNG229970.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
Locationscaffold32_size1584725: 324582 .. 325470 (+)
Sequence length364
RNA-Seq ExpressionChyUNG229970.1
SyntenyChyUNG229970.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGAGATACATGTAAGACCTGCAATCATCCACACTCGAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGGAGTACGTTGGTGTTATGGATGTGGGGATCATTGGTGTTATGGATATGGGGACCAACGTGGAGGTTTATAAGGGGTTTTGAGGAAGAAATTGAGGGCTTGGGTTATTTGAGTTGAGACAACTGGTTGTACATGTCTTGAAGTTGTATCAATATATCGTGCTATCAGGGTGTGTATTACCTGTTTTTCTTATTTGTTGGGCATTACTGCGTGCAGGATTACAATAGATGCCTATTAATAAGGATATAGTAGTAATTAACTAGGGACTTCTGGTTATAAATTGAGAGAGTGAGAGGTCATATTTTGGTGAATCAAACCGAAAGCTATTGATATTATTTTTAATTTCTTTTGATTTGCAATATAATTTTTGTTTTTCATCTTGTTGTACTTGGGATCCGAAAACATTCTTCCAGAGGGGCATCGCATGCATGGGCTAGTGCCTTTGCTTTCTTTCCCGTATTTATTTTACTTCGAATACAGCTGGTGTACAACAAGTTCTACTTCTCCAAATTGTACCTTAAAGGCTTAAGGGGAAGTTCTTCAATCAATCAATTATTTCTCCTTTCGGATCTAACGAAACTTGATTTGAGGGGTTATCAACTCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTTACTTCGATGGAGATTTTGAAATAAGTTTGAATAGTCTGCAAGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAACATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTA

mRNA sequence

GAGGAGATACATGTAAGACCTGCAATCATCCACACTCGAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGGAGTACGTTGGTGTTATGGATGTGGGGATCATTGGTGTTATGGATATGGGGACCAACGTGGAGGGGTTATCAACTCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTTACTTCGATGGAGATTTTGAAATAAGTTTGAATAGTCTGCAAGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAACATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTA

Coding sequence (CDS)

GAGGAGATACATGTAAGACCTGCAATCATCCACACTCGAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGGAGTACGTTGGTGTTATGGATGTGGGGATCATTGGTGTTATGGATATGGGGACCAACGTGGAGGGGTTATCAACTCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTTACTTCGATGGAGATTTTGAAATAAGTTTGAATAGTCTGCAAGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAACATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTA

Protein sequence

EEIHVRPAIIHTRAIPFLPQGVEGSTLVLWMWGSLVLWIWGPTWRGYQLFSSYGTYPSYTFTFFTSMEILK*V*IVCKLQHFWKKDCSNILILWTYFLMLLWHHLKMMFKII*L*LLNLIAX
Homology
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BLAST of ChyUNG229970.1 vs. NCBI nr
Match: KAE8649603.1 (hypothetical protein Csa_023767, partial [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 7.24e-06
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  EEIHVRPAIIHTRAIPFLPQGVEG 24
          EEIHVRPAIIHT+AIPFLPQGVEG
Sbjct: 1  EEIHVRPAIIHTQAIPFLPQGVEG 24

The following BLAST results are available for this feature:
BLAST of ChyUNG229970.1 vs.
Match NameE-valueIdentityDescription
BLAST of ChyUNG229970.1 vs.
Match NameE-valueIdentityDescription
BLAST of ChyUNG229970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649603.17.24e-0695.83hypothetical protein Csa_023767, partial [Cucumis sativus][more]
BLAST of ChyUNG229970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ChyUNG229970ChyUNG229970gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ChyUNG229970.1.exon1ChyUNG229970.1.exon1exon
ChyUNG229970.1.exon2ChyUNG229970.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ChyUNG229970.1.cds1ChyUNG229970.1.cds1CDS
ChyUNG229970.1.cds2ChyUNG229970.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ChyUNG229970.1ChyUNG229970.1-proteinpolypeptide