Chy9G164880.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy9G164880.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH09: 10376002 .. 10378546 (+)
Sequence length	587
RNA-Seq Expression	Chy9G164880.1
Synteny	Chy9G164880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATCAAATTGCTCCTTCATGGGAATTAGTTGGTAATCTCAGAAACTGAGCTCTTCTTTTGTGCTGCTAAGAGGTCAGAAACATAACTTGACCTAGTTGTTTTTTATATATTCTAAATCATCAATCAACTTCGAATGTTTAAGTTATAAGTTATGCTTAACATTATTATATCTATATTCTTCGACGCAATGAATTCAATCGTGGTGTAAAACATTTTAAAGAATTAAATAATAAATAACTGACACAGGACAGTTTTTTATTAGGTAAAGTTTTCAGTTATGAGTAGATTTGTTTGTAACAGGAAGACAGTGAGATCAATTCCTGGGTGGCTAAGATGGATGTTCCATCAAATATGGTTAATAATTAGTATGTATTAATTAGTTTTCTTTCGCTCTTTCACTCTTTCTCTCTTTCTCTTCCTCTCTTTTCTATTTTATTTCCTTTGTTTCTTGAATGAATGAATGAATGGCCAAAGTTTGATGAAGAAATCAACCTATGGGATTAGTTTAAATTGTTTATTAAAAAATAAATGTTTAGAGAATTGCGAACTCGACTCCTTTACTCACTCTTAAAAACTTGATACTAAAATAATTTGTTTGGTTTAAGTAGAGTGCAGGGCTGTGGTTGGAGTCAAAGATAATGAAGAATAATGATGGACAGCTAAAAGGTGGAGGCTTTACTATTCCTTATCAGCACTCTATGATCACCAAACACCAAGGTTTACTTGCCTTCTCTCCTTTTTTTCTTATATTAGTTTTGGGAAATAATGTTAGTTTTTTATTTATTTATTTATTTTATTTTTTCTCTTTCTACCAACAACTTAAAAGAAAAATTGACATTATCACAGTATTATTTGAAAATTTAAAGGTTCGTTTGATAGCCATCTTGTTTTTTGGTCTTTTATTTAAAAGTTTAAGCATTTTTTCTTTTCATTTCATATAACAATTTGCATTGTTTTTTTAGTACTATAGTTGAATTCTTTACTAAATTCTAAAAGAAAAACAAATTCTCAAAACTTTGAAAGTTTGATTTGGTTTTTTAAATTATTTATATATATATATATAATAAAGAAAGAAAGTGGTAGTTTTTTCTTCTTCTTTTTTCTCTCTCTCTCTTTTTTGAAGGTGATCCTACTTTGCTTTTTTCGGTGTTCAAAAATTTGGAAAACTTATTATAATTTGTAACAGGAATCGTATAAAGAAAAGGAACAATTATTAATTATAAATATGATAATTTGGTCTACAATAATATTAGTAAATATATATAACCAAAAAAAATAGATAAATATACCAAAAAATTACCTAGAGAGTTTATTATTGATAGATTTTGTTATATCTACAATTATTTAAAAATATGTTATTATACAATTAATTATTATCTCTAAAAGTGTGTTATCTAATGCAATTATCTAAATAAATATTAATACCTTGAGTTTAGGAGGAAGATATATTTTAACTTGCAGATGAATTTCTTAACCAAATTGCAAATGGTCATTTTTTTTCCCTTTGTTGTGTGGAAGGTTGCAATAATGGAAGTATATCTATAAATGAAAACCATGTTTCACCACAGTCAATATTGTTTCCTAAGAAGCTGTGTTTCTTGGAGAGTGAATTGGTAACAACACTTTCATCCCCTCTAATTTAACTTAATTTCCAACAATTTTATTACTACTTTGTACACTAAAACTGTGTATTTATTCCTTTGTTTTTTGTGGCCTAATATATATATATATAGAATGCAAACAAAGATGAGTTATTGTTTGTCCAAAAAGCCCTACAAACACCCCCATTTGATCATTTACCAGCAGATTATTACAAGAGAATTAAGGTTAGTGCCCAAGCATTTCTTTTATTTATTTATTTAAATTCTTTTACAAAAGAAAAAAATGAGAGAATATATTGAAATATAGTAAAAACTAATTAGAATAACCCTCTCAAATTTTACGTTAAAGAGATTCAAGAATTAAGGTGTATTGTATTTGGTAGCATATATTCAAAAGTTGAATCTATAAAAGTTTAAGTATAGTTAATTAGTCACTTAAAATTATAAAAAAAAAAAAAAAAAAAATGAATGGTGGAAACTTAAATTAGTCTAAAAAAGAATCACATTTGAATAAGCACTGATTGTGATGTATAGTTTGATGGGGGAGTAGTTGCAGGTACCGTTACCAATAAGGAGAAGTCAAAAGCTTAGCGATAAAATTACTGCCCTTCAAAAGCTCGTTTCCCCTTACGGCAAGGTTCCTCTTCTTTTTTTTCTTTTTTTTCTTTTCTCCCTAAATTACTCTTCTATCCCTACCTCTCTACAATTCAATTCAACACTCACACTTTCAACTCTAATTTTTACTCTATACTCACTTTCCTTCTTACTTAATTGCTTTTTTCTAAAAAAGTAAAATTAATTTATAATTTTGGTAAAAATGTAGATAAAAAAACTAAAAGATAATTAAAAATGATTATATGTTTGCTGTTATTATAGACCGATACTGCATCTGTTCTTCAAGAAGCCTATCTTTATATCAAATTCATTCAACACCATATTCAG

mRNA sequence

ACAATCAAATTGCTCCTTCATGGGAATTAGTTGGTAATCTCAGAAACTGAGCTCTTCTTTTGTGCTGCTAAGAGGAAGACAGTGAGATCAATTCCTGGGTGGCTAAGATGGATGTTCCATCAAATATGGTTAATAATTATGCAGGGCTGTGGTTGGAGTCAAAGATAATGAAGAATAATGATGGACAGCTAAAAGGTGGAGGCTTTACTATTCCTTATCAGCACTCTATGATCACCAAACACCAAGGTTGCAATAATGGAAGTATATCTATAAATGAAAACCATGTTTCACCACAGTCAATATTGTTTCCTAAGAAGCTGTGTTTCTTGGAGAGTGAATTGAATGCAAACAAAGATGAGTTATTGTTTGTCCAAAAAGCCCTACAAACACCCCCATTTGATCATTTACCAGCAGATTATTACAAGAGAATTAAGTTGCAGGTACCGTTACCAATAAGGAGAAGTCAAAAGCTTAGCGATAAAATTACTGCCCTTCAAAAGCTCGTTTCCCCTTACGGCAAGACCGATACTGCATCTGTTCTTCAAGAAGCCTATCTTTATATCAAATTCATTCAACACCATATTCAG

Coding sequence (CDS)

ACAATCAAATTGCTCCTTCATGGGAATTAGTTGGTAATCTCAGAAACTGAGCTCTTCTTTTGTGCTGCTAAGAGGAAGACAGTGAGATCAATTCCTGGGTGGCTAAGATGGATGTTCCATCAAATATGGTTAATAATTATGCAGGGCTGTGGTTGGAGTCAAAGATAATGAAGAATAATGATGGACAGCTAAAAGGTGGAGGCTTTACTATTCCTTATCAGCACTCTATGATCACCAAACACCAAGGTTGCAATAATGGAAGTATATCTATAAATGAAAACCATGTTTCACCACAGTCAATATTGTTTCCTAAGAAGCTGTGTTTCTTGGAGAGTGAATTGAATGCAAACAAAGATGAGTTATTGTTTGTCCAAAAAGCCCTACAAACACCCCCATTTGATCATTTACCAGCAGATTATTACAAGAGAATTAAGTTGCAGGTACCGTTACCAATAAGGAGAAGTCAAAAGCTTAGCGATAAAATTACTGCCCTTCAAAAGCTCGTTTCCCCTTACGGCAAGACCGATACTGCATCTGTTCTTCAAGAAGCCTATCTTTATATCAAATTCATTCAACACCATATTCAG

Protein sequence

TIKLLLHGN*LVISETELFFCAAKRKTVRSIPGWLRWMFHQIWLIIMQGCGWSQR**RIMMDS*KVEALLFLISTL*SPNTKVAIMEVYL*MKTMFHHSQYCFLRSCVSWRVN*MQTKMSYCLSKKPYKHPHLIIYQQIITRELSCRYRYQ*GEVKSLAIKLLPFKSSFPLTARPILHLFFKKPIFISNSFNTIFX

Homology

The following BLAST results are available for this feature:

BLAST of Chy9G164880.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G164880.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G164880.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G164880.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy9G164880	Chy9G164880	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy9G164880.1.exon1	Chy9G164880.1.exon1	exon
Chy9G164880.1.exon2	Chy9G164880.1.exon2	exon
Chy9G164880.1.exon3	Chy9G164880.1.exon3	exon
Chy9G164880.1.exon4	Chy9G164880.1.exon4	exon
Chy9G164880.1.exon5	Chy9G164880.1.exon5	exon
Chy9G164880.1.exon6	Chy9G164880.1.exon6	exon
Chy9G164880.1.exon7	Chy9G164880.1.exon7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy9G164880.1.cds1	Chy9G164880.1.cds1	CDS
Chy9G164880.1.cds2	Chy9G164880.1.cds2	CDS
Chy9G164880.1.cds3	Chy9G164880.1.cds3	CDS
Chy9G164880.1.cds4	Chy9G164880.1.cds4	CDS
Chy9G164880.1.cds5	Chy9G164880.1.cds5	CDS
Chy9G164880.1.cds6	Chy9G164880.1.cds6	CDS
Chy9G164880.1.cds7	Chy9G164880.1.cds7	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy9G164880.1	Chy9G164880.1-protein	polypeptide