Chy9G158620.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy9G158620.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH09: 1246938 .. 1252680 (-)
Sequence length399
RNA-Seq ExpressionChy9G158620.1
SyntenyChy9G158620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGTAGCGAGGTTTTGTTTTTGTAATTTCACATTAATATGATATAAGTAAAAGGTTAACAAATATGATGCAGTAAACTGGCTAAAGAGAAATCGAACTCAAGAGTGAGTTTGTTGAATTGAGAATTAGAATTGACTTATCTCTTCTACCGTTATCAAAATCATAATGTATATATAAGTGGAATGATCTCGAGTTTCTTCCTCATACTTCGAGAAATGTTTGATTAGGTTCGAGTCAATTCATCTTGGATCAAAGTTTGCCTCGATTTAAAAAATATTGGTTTTAGTTGTAATGGTTGAAATTGAGAGGGATACATCATCTCTAAATAAACTAAGATCACATTTGAGGGGAAGGTATGTTGAAAATATTAAAGTATAGTTAAGAAGTGCTCAAAAGAAATGTGGAAATATTAAAGTATAGTTGTAATGCTGGAAATGTACACATTTCTTTTCAGTGACACAATCATAATAATCTAAAGTTCAGTGCATTTGTTTTGGAACAATTACATTTTTCGGATATAGGTTTTTTTATTGTGCTCTATAATAATTTTATGAATAATTGGTTTATTGTTTAATTTATTTAATAAAAGTTATTATTCTCATTATTATTCACTTGCATGTTATTGTATAATAATATCCATGAATATGTTATTATATTCTAAATGTCCTCAATTGATTATTATTGTGGGAACAATAATAAATTAGGATTAATATGAAGTATAATTGATAATCATAGAAGGATTATATATGTAGAGACATAAATTATAATAATATTTTCTTATTAGAAAATAAGAATTGGACTCACCTCTTTTGAGATTATTACACGTACATGTGTCGTAAATAATTTAAAATAATTGATTGTTTTGATCTTTAGACCTGAGATTATCATAGTGTCAAACATAAGAATTAATCTATTTTGATGCAATTAAATGTTATTTTTAATCGAAAAATTAATAATGTTGTACTCAAATACGTTATTAATTATGTAGTTGACAATGATTAATCAAGATGAATTTTGTCCCTCTTGTTAGGGAGAGATATTTCTGGGTCACTCGATTAAGCGGTAGAAATGCATGGTCGTGTTATAAAATGAATTAATAAGGGTATTAATATCACTTATTATTTCAGTATGATTATTGAATCATTTATCAAGAAAGCAATTGAATTAGATAAAGTGACTTTGTCCATGTCTTATATTCAATTATAGATATCGCGTGATAAAATAATTAAAACAATAATTATATTAGGTTATGTTGGATCACCGACTTAATTTCATATGGGTAGCCATAATGTATTACTAGAGACCAGTTATGATTTATAGGCCATAAAACGAGTTATGGGTTAATTGTCATATTAAATTAACTTAACGGGTCACTCACGAAAGAATTGAGATCTATAATTAATAAAGGGTTGTCAAGAAGAATAACCAATTATGATTTTTACTTTGGAAAAATAGCAAATTTATTTTTAAATTGCTAGAATAGCAAAATTGAAAAATCGAAAAGATAAATAAAAGGAACAATGTCTCAAATGCCCCTAGCCAATTCAAAAACAGTCCTAAATACAATTGTTCACCTAAAACCCAAATACCCTGTAATTAAATAACACATCATTGTTGAAATTGTGCACTTTTAGGTATTTAAAGCCGAAAAGAATCCAGCTTCACCATCTTCCACTTTCCTAGATTCCACCAAATCTTCAAAGTCTTCGATCAGTTGCAGAAAAGATTGGAGTTTCAAGCTTCGTCCTCCTCAAAATCTTTAAAGTCTTCATACATTCAATGCAAATCAAAAGATTTTCTTAACTTCAAGGGGCTATTAAGAAAAAGTACAACAAAACCCCAACAATCACAAAGTCACTAAAATTCAGCGACCGATGGTGGCTGGAAGTTTTGGCAGAATCGGTGAACCAATGGTGATGAAGGAAACCGACGCGGCTGGATGTGCGATGCATGAAGAAAACCGACGCGGCTGGATGTGCGATGCATGAAGGAGCAAGCGGAGCAAAGGCGCTCGACTTCAGATGAAGTAAAAATGTGACTAGCGATGTGCAACGGATGAGACGTTTCCTTATGGCTTAGTTCTCAGTCAATAGAATGGAGGGGATGGCTACAATGGTGGATATCTCGACTGGACCGAGAACACTCAAACGGCTAGGGTTTTGTGAGAGTAAAGAAGATGATGGATAGTAATAATAATATTGTTATTAATAATAAATATTATTATTTTATTCTTTTCCCTTAAATATCTTCCTTTTCTTTTTTTCTTTTCCAATTTAAATAAAATAAATATTTTCTTCTCAATTAATTCCTTCCAAAAATAAAATATTTAATTTTCTTTTATATAAATTTTGGAATATAAATAATTTGAAGATGTTAAATTTATGTTTGTCATTATTTTGGAGATATGAAACAAATAACATGATTTTAAGGGATGATAAAAATTTTAATAACATAAGTGGATAATCTTAGCACGATTTTAGGGATAATAAAGTTTTAAATTGAAATTATTATTAACCATACCTATTTTTATAAAATTTTAAAGCAATTTTAATATTTTGGCGGTTTCAAATCAAAATTTAAAATCTATTTTTAAAAAACAATTATGGAAAATAGATATAGGATATTAACAAGATAATCCTAAAATTTAGAAATTATGTTTGGCATCGTTTTAGGAAAATCAATCAAGTGTCACGATTATAGGGGAAATATCAAAATTTTCTTAGAATAATCATATATACATTAAATGCATCATAATTATAGGGGTAAGATACAATTTTAATTTTAACAACCATAACTAAATAAATTGTTAATTACTTGATTTGAAACCTACCAACACGAAAATCTAGGGGATGTTCAGATCTATCCCGAAAATAAATATTTATTTAATATTTTTACACAACTGAATTATTGCAAATACACTGTATTTGTCATTATGGGTTATATTCCATCGTTTTAATCTACACAAATACACTGTACTTATAAGATAAGAATTTCCCTCTGTACATGTAAAATCAGCTGAAAATATAAAAAAGTGAAATTCTTGTATATTTTAGGTATTTAAATTCAAATTTTTATAAATATTTTGGAATCTAAATAATCAAAAGATATTGAATTTATGTTTGCCATTATTTTAGGGATATCAACTAAACTAAATAGCAAAGAGTGAATCTGCTTTAATAAAATAAGTGGATAATGATTTTGGGGAATGATAAAATTTTAAATTGAAATTGTTATTAAGCATATTTATTTTGGAGGTATTTAAATTTAAAATTTTTTTATAAATATTTTGAAATATAAATAATAAAAAAATTTGAATTTATGTTTGCCATTATTTTAGGGATATGATAGTTTAAAAGAATTCAAATTGACGATTTTATTGGATGTTAAAATTTAACTTCAAATTGTTATTAGAAATATGAAAAATATGTATCATGTATTTTATAATAAAATATTAATAAATATTAAAAGGAACTTTATGAAACGAAAATTGATGAAATTATATTAACCATTATTTTAGAGGTGACAAAAAAATTTGAATTCAAATAGTCATTATTATATATATTATGAATTATAGAAATAAATTGTTAATTAATTGATTTGAAACCTACAAATATGAATATGTGAATCTGTGATATTCTGTATCATTTTTTACCTATATTATGTATAATTTTTTACCTATATAAATACACTGTATCTGACGCAAAAGAGTTTTCGTATACAAAGGGTATAATCAGTTAAAAAAAAAGTAAAAAAGAAGTCTACAATCCAATTTTGCTATAAATCTTAATATTTTTTAAATTTGCTATTTTCCAGTTTGTTATCCAATTTTTTGCTATTTTTCAGTTTGTTATCCAATTTTTTTGTCATTCTCATAGTTAGCTCATTAATAAATCCAATTGGAGAAATAGAATCCTATTAGGAAACACAATTAATAAGTCCAATGGGAGAATTGGAAACTTATTAGGAGAGGTAATTAATAAACCCAATTGAAGAATTTGAAGCTTAATAGGAATCCTAAGCTTATTAGGAAAATTCAAGAAGCCTATAAATAAGACTTTAGGGGTCTTATTTTACATGAATACTGTTAGAGCGCAGCGTTTTGGTGATACGAATTGGAGGATCGTTTTTATAAAAAATGAAGACAATTCAATTTAGATAAGTTCAATATATATTTATGTTTATTTGTGATTTAATTGTTTACGCATGTATTTATGTTCTTGCTATATTTTATAAGTATTTTAGTTTTTCCAAAATTAGTTAAATAATTATGAGAATGATCAAGTAAGAAAATACAATATCTAATTCCAAACTTTATATGGAAAATCCTAACGAACAATGGAAAAGTGAAAAAAAAAAAAAAAAAAGAGACTAAATTCAAAGTTTATTAAAATACAAAGATCAAAATCAAATAAACTAAAAATAAAAATCATATTAGAACCCTAAAAATATAAATAAAAAAGGCAAAAGAGAGAAAAAAAGAAAAAGAAAAAGGGAAAAGAATCTGAATCGTACGGCGAGCACTCATCAATCTACTGCGCCGCCCGGATCATCATTTGACCTCACTCGCTCTTCGTCGTTGCTCTGTCTTATCTTTTCCCAATTCCGGCTCCGACTGATCTCTCCGGCACCGGACTTCCCCCTTCTTCCCCTTCCTTTTTCTTTCACAATACAGGCTTTCAATTTTTACTGACGGTACCTTCTTCACAACCCTAAATTTATCTTTTTCTTTTTTTTTACCCCTCGTACAATATGCTTCTTCTCATTCCTTATTTGGTCTATTACAACCTTGGCTCAACTTAGCTAGAATGTATTCGAATTAGGAATATTTCAAGCGTTTTTTCAATCCCCGGTCTGATAATTGAGTCTGAATTTACTTTTTTTTTTTTAATATATAGTTTGATTAATCTTTCGAAATTTTAGAATTTGAAGAGTTGCTTGGTGCTTTAAAACCATTTTTACTCACTTTAGTAACTGGGTTTGCCTCAAATTGGATGCTTGAGTTTTTTTCCCCTATTTAAATGCCATGCTGTAAAGAGGTGTATGTGCATTGTTATTTATGGAAGTTCAAATATATGCTGCCAAGTTTTCAGTTTTTGTTATCATCATCTGCATCCAATTGTACCATTTTTCAGTGATTTGATGTTGTTGATATAATACTTTGAAGGTTGAGTAATAATTTGTTATAAAGAAAGTTGGAAAAAAGTGCTGACCACAGGTAATTAAAGGAGGAGTTCAAATCCTCAACCCACATTTTGTGGACTATAAGGAATAATTAACTTCAACTGGATAATACTGTTTTTAGTTTTAACATGACTTGGATATGTATTTTCAGAATTTTTAGACACCAGCTTGTGGATTAGTTTCTAACCCTACAACGTTATCTATGAATGCACCAGTTGATGGATAATATCCAAAGTTGGGGATCTTGGGGAATTTTGAAACTTGGTTTTTAAGAAATGAGGTTGTTTTGAAAGTTTCGGATTCTGAAAGCGCCATAAGTCAGATAGATATTTTTTGGATTCTTTATAGTTTTATTTTCTTGTAAAATTAATATTTATGTAAGTTAATTAAGTTCCTTAATTAAGTTCCTGGTCTACTTTTACCTGAAGTGTTCTTAGTGTCGTTATGGCATTAACTTGTCCCATTGCCACTTTTTATTGATAGGTGATTTCTACCTGGTATGCTGTTTATTCCTGCAAGTCAAGTTTACAGTTAGTGAGTGGACATTTTGCTACAAAA

mRNA sequence

ATGTACAGTAGCGAGTAAACTGGCTAAAGAGAAATCGAACTCAAGAGTGAGTTTGTTGAATTGAGAATTAGAATTGACTTATCTCTTCTACCGCAAAAGAGAGAAAAAAAGAAAAAGAAAAAGGGAAAAGAATCTGAATCGTACGGCGAGCACTCATCAATCTACTGCGCCGCCCGGATCATCATTTGACCTCACTCGCTCTTCGTCGTTGCTCTGTCTTATCTTTTCCCAATTCCGGCTCCGACTGATCTCTCCGGCACCGGACTTCCCCCTTCTTCCCCTTCCTTTTTCTTTCACAATACAGGCTTTCAATTTTTACTGACGGTGATTTCTACCTGGTATGCTGTTTATTCCTGCAAGTCAAGTTTACAGTTAGTGAGTGGACATTTTGCTACAAAA

Coding sequence (CDS)

ATGTACAGTAGCGAGTAAACTGGCTAAAGAGAAATCGAACTCAAGAGTGAGTTTGTTGAATTGAGAATTAGAATTGACTTATCTCTTCTACCGCAAAAGAGAGAAAAAAAGAAAAAGAAAAAGGGAAAAGAATCTGAATCGTACGGCGAGCACTCATCAATCTACTGCGCCGCCCGGATCATCATTTGACCTCACTCGCTCTTCGTCGTTGCTCTGTCTTATCTTTTCCCAATTCCGGCTCCGACTGATCTCTCCGGCACCGGACTTCCCCCTTCTTCCCCTTCCTTTTTCTTTCACAATACAGGCTTTCAATTTTTACTGACGGTGATTTCTACCTGGTATGCTGTTTATTCCTGCAAGTCAAGTTTACAGTTAGTGAGTGGACATTTTGCTACAAAA

Protein sequence

MYSSE*TG*REIELKSEFVELRIRIDLSLLPQKREKKKKKKGKESESYGEHSSIYCAARIII*PHSLFVVALSYLFPIPAPTDLSGTGLPPSSPSFFFHNTGFQFLLTVISTWYAVYSCKSSLQLVSGHFATK
Homology
[Close]
BLAST of Chy9G158620.1 vs. ExPASy TrEMBL
Match: A0A0A0KUK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643920 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.9e-20
Identity = 75/138 (54.35%), Postives = 85/138 (61.59%), Query Frame = 0 

Query: 1   MYSSE*TG*REIELKSEFVELRIRIDLSLLPQKREKKKKKKGKE--SESYGEHSSIYCAA 60
           MYSSE  G REIEL SEFVELRIRIDLSLLPQKR++K+KKK ++  + +   H S     
Sbjct: 1   MYSSE--GRREIELNSEFVELRIRIDLSLLPQKRKRKRKKKREKNLNRTASTHQSTAPPG 60

Query: 61  RIII*PHSLFVVALSY----LFPIPAPTDLSGTGLPPSSPSFFFHNTGFQFLLTVISTWY 120
                  S  ++ L +    L  I    D     LP     F F    FQFLLTVISTWY
Sbjct: 61  SSFDLTRSSSLLCLIFSQFRLRQISPAPDFLFLPLP-----FSFTIQAFQFLLTVISTWY 120

Query: 121 AVYSCKSSLQLVSGHFAT 133
           AVYSCKSSLQLVSGHFAT
Sbjct: 121 AVYSCKSSLQLVSGHFAT 131

[Close]
BLAST of Chy9G158620.1 vs. NCBI nr
Match: KGN52564.1 (hypothetical protein Csa_007972 [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 5.29e-26
Identity = 75/138 (54.35%), Postives = 85/138 (61.59%), Query Frame = 0 

Query: 1   MYSSE*TG*REIELKSEFVELRIRIDLSLLPQKREKKKKKKGKES--ESYGEHSSIYCAA 60
           MYSSE  G REIEL SEFVELRIRIDLSLLPQKR++K+KKK +++   +   H S     
Sbjct: 1   MYSSE--GRREIELNSEFVELRIRIDLSLLPQKRKRKRKKKREKNLNRTASTHQSTAPPG 60

Query: 61  RIII*PHSLFVVALSY----LFPIPAPTDLSGTGLPPSSPSFFFHNTGFQFLLTVISTWY 120
                  S  ++ L +    L  I    D     LP     F F    FQFLLTVISTWY
Sbjct: 61  SSFDLTRSSSLLCLIFSQFRLRQISPAPDFLFLPLP-----FSFTIQAFQFLLTVISTWY 120

Query: 121 AVYSCKSSLQLVSGHFAT 132
           AVYSCKSSLQLVSGHFAT
Sbjct: 121 AVYSCKSSLQLVSGHFAT 131

The following BLAST results are available for this feature:
BLAST of Chy9G158620.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy9G158620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUK35.9e-2054.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643920 PE=4 SV=1[more]
BLAST of Chy9G158620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52564.15.29e-2654.35hypothetical protein Csa_007972 [Cucumis sativus][more]
BLAST of Chy9G158620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy9G158620Chy9G158620gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy9G158620.1.exon4Chy9G158620.1.exon4exon
Chy9G158620.1.exon3Chy9G158620.1.exon3exon
Chy9G158620.1.exon2Chy9G158620.1.exon2exon
Chy9G158620.1.exon1Chy9G158620.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy9G158620.1.cds4Chy9G158620.1.cds4CDS
Chy9G158620.1.cds3Chy9G158620.1.cds3CDS
Chy9G158620.1.cds2Chy9G158620.1.cds2CDS
Chy9G158620.1.cds1Chy9G158620.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy9G158620.1Chy9G158620.1-proteinpolypeptide