Chy8G153140.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy8G153140.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ctenidin-1-like
Location	chrH08: 14919046 .. 14922035 (+)
Sequence length	651
RNA-Seq Expression	Chy8G153140.1
Synteny	Chy8G153140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCAACTTTTTTGGTTGATGATTACCTTCGTAAGGAAGTTATTAAAGGTCAAACCTTTCACAAAATATAATATTCAAAGGGTTTGAATGTTTCAAAATTGATTTCTGTTACGTGTAAAATTCAAACAACTGAGTCGTAAAATATAATATCTATGTTTCAAAATATAATATCCCAATCTTTTTTCATTCAATGCAGGATTTATTATATCAATGAAAGGAGATTAACATTTGTAAAGCTTCAACATATTCATAGGAAAAAGGAAACTATATTCTAAAAAGAAAAAGATGGTTGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTCCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTTCCGGAGATGGTGCTCATTCCGGAGGCGCTGATGGCCGAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGTGGGGGAGGAGATGGTGGAGGCGGAGGCGGAGGCGGGGGAGGTGGCGGAGGGTAGATCTGCCTGGTGATGTTCATTTTATTGTATATATGTATTAAACAGAATTAATTAGGAGGTTTTAATCTCATAAAATTTTAATGAATTTGCGTTAGTAATTTGGTAGACAAATTGCCGGTTGCATATATTGTTTGGAGAGCTTAGATAACTCCCAATTTGTTTTCAACACTATTTTCTCTTTTCTTTTATGTATATCTATTAGTAATAGATACAATTTTTTTAAAAATATTGTTATCCATTATAAATGGATATTCTAGAAAATATGATCTAATTTGAATGGAGAAAAAAATCCCAAATATGAATCTAAGGAATGGAATTCTCAAAATGTATCTCTTTGGAAAGTATTAATTGCATTTGAATAGTTGAGGTGTAAAGAGCAAATAGTTGGAAGTTTCAGTTTCCCAAAATCAATTATTTATATCTTCGGCCCCAGCATACATTGCAACCTAATTGAGCGCGTTGGAAGCAAAACAAAAAACCAAATTGGACAAATCCTCAAAGTCTAATAAATTCAACCCACACAAATAAAACTAACACATACAAAATATGATCAAACATAATTAAAATTAATGCTTTGAAAACTAGAAAAGCTCATATTTTCATCCACATATTAACATTATTTTTAAATTAACTATTAAGTACCCTACCCATCAAGTAAGCCCTGCACATACCAACTCATAAATAATTAAAATTCATATTTTCGCACACATATTAAAACCAACTTAAATCTTCATTGGAATAAGTTATGCAAATTAAATGCCATGTGATTAGGCTAGAATGTTTATTTTAATATGTCAATACTATATTGTAATAGCTAAAATCTTTGTTAAATTGAGATATTCAAATAATGGAAATACTACATGTATTAAAAATCATGCTTAATTTTATAAAATAAATCAATGAGAATTACTAATTCTTCCACAAATATATTAAAAGAAATTATTGTAAATAATCAAAGTGTTAAAAATATTTACAAAATTTCATATTCTAATAATAGAAACCAGTAGAATCCAAAATTTGCTACATTAACATTTACTAGATATGAGGTTAAGAAAAGGGCATTAATATTACTCGTAAAGATCATTAAAAATTATACATTACAAATAAAGGAAGTAATCAAAATGTCTGGGTGGTGTAGTTGGTTATCACGCTAGTCTCACACACTAGAGGTCCCCGGTTCGAACCCGGGCTCAGACAAATCTTTTCTTTTTTTAACATATGTGAAGATACGGATAATGAAAAGGAAGTCTAAAATTCCACATTCATAATATAAACATAGACTTCATATTTCATGACATCACATTACTTGAACAATAATAGTGCAATAATAACATTTTTTTTAATGAATTTGCAGATGACAAAAATTGATGTATCAATGAGTGCACCCTAACTAGGTTTACATCTCTTTAGTTTTAGATCATTATGATATAAAACACTTTAAATTTGATATTGGGCTATAGTTTTTAAGTGTGGTTATTGATAATCTTGTCCAGATGTTTTACAAGTTGTCCTTTCACATTGTCTGTAGCTGTTTTTTCTAGTTCGAAAATTTTCTATGTTAATTTGCTTGTTCCTAGTTTTTTCTTCTTTTTCTTCTTTGTTATTTTTCAGCTTAGGATATAATATTAGGTTTTTCTTAACCACATTAACATTTGAATGAGTAACCCAAACATAAGATCATTTGAAACTTCTCCTTTCCATGAACTTCACCAAAGTCATATTTAATTCGATGACCATATCAATATTATCTGTTTAAACAAACATTTTCATCATCGGTTAATTATTTGACCGAGCAAAACACCGGTGAGTATTTAATTATTCAAACTCATTTATTACCTTAATTTACAAGTTCTTAATCCCAGAAATTTCCCAAGTCAACTAATCAAGATATAATTTTTTAAACAAACACTACTAGAAAAATCATTTGAAACGTTAAAATCTAAATACTTTCATTTGTTATAAAAAGGGAGACAAAAAAAAAAGAAAAAAACATAAATTGAATTCATTGCACCAGCTGAGGTGATAATTAATAGAGATGATGCACGACGGCGCCGATGGCATAGTGTTCACAGTGTTTCCAATAGTTTTTGGAGTGTTGGTGTTTGTGGGTATGTTTACAATTTTGGTTTGTTTTATCGTAACTTTGTATCGTCGGTGGAGACAGTATGTGAATCAGATGAACGGCGGAGGTTCCGGCGGCGGAAAATTTTTCATAGTGTTTGATCAAGATAGAAATTATACTTGTGGAACCAACTTTCTGGCCGGAGGTGGCGGTGTCGGCAGTATAAATCCTGGTGGCGGATTTCGGTTGATTGAAAGTATGGTGGAGGAGGAAGTTATGAAATGCCAATCTTGTAGGTCTTGCAGCTGCAGCTGCAGTGGTCGTTACGGAGCCCTTTGA

mRNA sequence

ATGGTGGCAACTTTTTTGGTTGATGATTACCTTCGTAAGGAAGTTATTAAAGTTTCCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTTCCGGAGATGGTGCTCATTCCGGAGGCGCTGATGGCCGAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGTGGGGGAGGAGATGGTGGAGGCGGAGGCGGAGGCGGGGGAGAGATGATGCACGACGGCGCCGATGGCATAGTGTTCACAGTGTTTCCAATAGTTTTTGGAGTGTTGGTGTTTGTGGGTATGTTTACAATTTTGGTTTGTTTTATCGTAACTTTGTATCGTCGGTGGAGACAGTATGTGAATCAGATGAACGGCGGAGGTTCCGGCGGCGGAAAATTTTTCATAGTGTTTGATCAAGATAGAAATTATACTTGTGGAACCAACTTTCTGGCCGGAGGTGGCGGTGTCGGCAGTATAAATCCTGGTGGCGGATTTCGGTTGATTGAAAGTATGGTGGAGGAGGAAGTTATGAAATGCCAATCTTGTAGGTCTTGCAGCTGCAGCTGCAGTGGTCGTTACGGAGCCCTTTGA

Coding sequence (CDS)

ATGGTGGCAACTTTTTTGGTTGATGATTACCTTCGTAAGGAAGTTATTAAAGTTTCCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTTCCGGAGATGGTGCTCATTCCGGAGGCGCTGATGGCCGAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGTGGGGGAGGAGATGGTGGAGGCGGAGGCGGAGGCGGGGGAGAGATGATGCACGACGGCGCCGATGGCATAGTGTTCACAGTGTTTCCAATAGTTTTTGGAGTGTTGGTGTTTGTGGGTATGTTTACAATTTTGGTTTGTTTTATCGTAACTTTGTATCGTCGGTGGAGACAGTATGTGAATCAGATGAACGGCGGAGGTTCCGGCGGCGGAAAATTTTTCATAGTGTTTGATCAAGATAGAAATTATACTTGTGGAACCAACTTTCTGGCCGGAGGTGGCGGTGTCGGCAGTATAAATCCTGGTGGCGGATTTCGGTTGATTGAAAGTATGGTGGAGGAGGAAGTTATGAAATGCCAATCTTGTAGGTCTTGCAGCTGCAGCTGCAGTGGTCGTTACGGAGCCCTTTGA

Protein sequence

MVATFLVDDYLRKEVIKVSAVLSLLCRWTGGGSSSGDGAHSGGADGRGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGGEMMHDGADGIVFTVFPIVFGVLVFVGMFTILVCFIVTLYRRWRQYVNQMNGGGSGGGKFFIVFDQDRNYTCGTNFLAGGGGVGSINPGGGFRLIESMVEEEVMKCQSCRSCSCSCSGRYGAL*

Homology

[Close]

BLAST of Chy8G153140.1 vs. ExPASy TrEMBL
Match: A0A0A0L128 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 3  ATFLVDDYLRKEVIKVSAVLSLLCRWTGGGSSSGDGAHSGGADGRGGGDDGGEDGGGGGG 62
          A F++   +   +  V AVLSLLCRWTGGGSS+GDGAH GGADG GGGDDGGEDGGGGGG
Sbjct: 4  AAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGG 63

Query: 63 YDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGG 95
          YDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGG
Sbjct: 64 YDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGG 95

[Close]

BLAST of Chy8G153140.1 vs. ExPASy TrEMBL
Match: A0A1S3BPC8 (ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 18  VSAVLSLLCRWTGGGSSSGDGAHSGGADG-RGGGDDGGEDGGGGGGYDGGGGGYDGGGG- 77
           V AVLSLLCRWTGGGSS+ DGA SGGA+G  GGGDDGGED  GGGGYDGGGGGYDGGGG 
Sbjct: 76  VFAVLSLLCRWTGGGSSTEDGAFSGGANGDLGGGDDGGED--GGGGYDGGGGGYDGGGGG 135

Query: 78  -SGGGGGGGGDGGG 89
             GGGGGGGG+GGG
Sbjct: 136 YDGGGGGGGGEGGG 147

[Close]

BLAST of Chy8G153140.1 vs. NCBI nr
Match: KGN54297.1 (hypothetical protein Csa_018030 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.47e-19
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 3  ATFLVDDYLRKEVIKVSAVLSLLCRWTGGGSSSGDGAHSGGADGRGGGDDGGEDGGGGGG 62
          A F++   +   +  V AVLSLLCRWTGGGSS+GDGAH GGADG GGGDDGGEDGGGGGG
Sbjct: 4  AAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGG 63

Query: 63 YDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGG 94
          YDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGG
Sbjct: 64 YDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGG 95

[Close]

BLAST of Chy8G153140.1 vs. NCBI nr
Match: XP_011654372.1 (glycine-rich protein DOT1 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.88e-17
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 20  AVLSLLCRWTGGGSSSGDGAHSGGADGRGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGGG 79
           AVLSLLCRWTGGGSS+GDGAH GGADG GGGDDGGEDGGGGGGYDGGGGGYDGGGGSGGG
Sbjct: 89  AVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGGG 148

Query: 80  GGGGGDGGGGGGGGG 94
           GGGGGDGGGGGGGGG
Sbjct: 149 GGGGGDGGGGGGGGG 163

[Close]

BLAST of Chy8G153140.1 vs. NCBI nr
Match: KAG6595346.1 (hypothetical protein SDJN03_11899, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 3.26e-15
Identity = 56/125 (44.80%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 102 DGIVFTVFPIVFGVLVFVGMFTILVCFIVTLYRRWRQYVNQMNGG---GSGGGKFFIVFD 161
           D IVF + PI+  V  F G F++   F+VTL  +WR+     NGG   G G GK  IV D
Sbjct: 4   DDIVFLMAPIMIMVFSF-GGFSL---FVVTLCCKWRELQKMNNGGAVYGGGAGKIIIVVD 63

Query: 162 QDRNYTCGTNFLAGGGGVGSINPGGGFRL---------IESMVEEEVMKCQSCRSCSCSC 214
           Q+ N   GTNF AG G VGS+N GG FR          +      EVMKCQSC SC C+ 
Sbjct: 64  QNGNPIGGTNFPAGCGNVGSLNIGGEFRYDRIYGGGPEVVVPTVGEVMKCQSCSSCGCTH 123

[Close]

BLAST of Chy8G153140.1 vs. NCBI nr
Match: XP_008450046.1 (PREDICTED: ctenidin-1-like [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 6.81e-07
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 18  VSAVLSLLCRWTGGGSSSGDGAHSGGADGR-GGGDDGGEDGGGG-----GGYDGGGGGYD 77
           V AVLSLLCRWTGGGSS+ DGA SGGA+G  GGGDDGGEDGGGG     GGYDGGGGGYD
Sbjct: 76  VFAVLSLLCRWTGGGSSTEDGAFSGGANGDLGGGDDGGEDGGGGYDGGGGGYDGGGGGYD 135

Query: 78  GGGGSGGG 79
           GGGG GGG
Sbjct: 136 GGGGGGGG 143

The following BLAST results are available for this feature:

BLAST of Chy8G153140.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G153140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L128	1.6e-14	81.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1	[more]
A0A1S3BPC8	1.1e-04	82.43	ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1	[more]

BLAST of Chy8G153140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54297.1	1.47e-19	81.52	hypothetical protein Csa_018030 [Cucumis sativus]	[more]
XP_011654372.1	1.88e-17	96.00	glycine-rich protein DOT1 [Cucumis sativus]	[more]
KAG6595346.1	3.26e-15	44.80	hypothetical protein SDJN03_11899, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008450046.1	6.81e-07	80.88	PREDICTED: ctenidin-1-like [Cucumis melo]	[more]

BLAST of Chy8G153140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy8G153140	Chy8G153140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G153140.1.exon1	Chy8G153140.1.exon1	exon
Chy8G153140.1.exon2	Chy8G153140.1.exon2	exon
Chy8G153140.1.exon3	Chy8G153140.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G153140.1.cds1	Chy8G153140.1.cds1	CDS
Chy8G153140.1.cds2	Chy8G153140.1.cds2	CDS
Chy8G153140.1.cds3	Chy8G153140.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy8G153140.1	Chy8G153140.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane