Chy8G151950.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy8G151950.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ACT domain-containing protein
Location	chrH08: 13630435 .. 13631678 (-)
Sequence length	360
RNA-Seq Expression	Chy8G151950.1
Synteny	Chy8G151950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTAGAGAGCGAAAGAAAGCAGCAGCAGCACCTAATTCTTCTCATCACAACTCTAAAGAATTTCGTGCTTCCACAAGCTCTACTGCTGTACTTTTCTCATCATTCTATCATTCTTAATTCTTCACTTTCTTTCTTTTATTTCTTGATTTCTCAACTCCTTTTTTCTTAAATTAAATTCGATCGAATCACGAGTTCCATTCTGGTTTTGTCTATTCCTCAATTTTTTTTTTTTTTATCACAACTGAGAGTAGCTGGATATTCTAACCATTATATAGTTTCTAATGTATTTGTACATCAAATGAAATCTCTTTAGTTGCTTCCTCAATTGATTTTCTAATGATTATTCAACTATGAGATGGAAAAAAAATAAGAAAAACTTTTATATTAAAAAATTGGTGAGAAATTAATAAAATTTCTCATGTTTTTGTTGGGCAAAACTGAAAATTTTAACTAAACTCTCTTGGAAAACATTAAAATAGAGAAGGAGAAGAGATTATATCATGTTAACTTTTTTTGAAGTAATATTGAATTTATTTATTAGAATCAATATAACACATAGATTTATTAATAATGGAGAATTAAGTATCTGAATTCAAATTAATATAGTTGTTATTAATTTAATTAACCAATTTTTGAACATGTGCAGGTGGTGAATGTGGAGAGTGTAGAGAGGGGTTTTCTAATAAATGTATTTTTGGAAAGAAATTCACCTGGATTGCTAGTTCGGATTCTAGAAGCCTTTGAAAAATTAGGACTTGGAGTCCTGGATGCCGATATATCTTGTTCCGATTGTTTCCAGCTTCAAGCTTTTGGAGAAGAGGTCCGATCTCTCACTACCCTTAATTAAAAACATTGTTACATTATTACAATGTGAAAGTAACTAACATAAATAATAACATTTCTCCTTTTAAAATTACCTTCATACATACGATTTGTATCTTAAAACAATCCAAGGAAAATCTTATTAATATAGATCATGATTACCTATGTTTTAAATGTATAATCCAAACATACGCATGTTTCTCATCTGTACACTTACAAAACATTTGTTTTGATCTTATTTCTTTTTCATCACTACGTTAAATTAACCAAAGTTCAAAGTATTTCAAAAATATAATATTGAGTTTTGTTTTGTTTGTTTACAGAATGAAGGAAGAAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTGATGGGCAGACATGA

mRNA sequence

ATGGGTTCTAGAGAGCGAAAGAAAGCAGCAGCAGCACCTAATTCTTCTCATCACAACTCTAAAGAATTTCGTGCTTCCACAAGCTCTACTGCTGTGGTGAATGTGGAGAGTGTAGAGAGGGGTTTTCTAATAAATGTATTTTTGGAAAGAAATTCACCTGGATTGCTAGTTCGGATTCTAGAAGCCTTTGAAAAATTAGGACTTGGAGTCCTGGATGCCGATATATCTTGTTCCGATTGTTTCCAGCTTCAAGCTTTTGGAGAAGAGAATGAAGGAAGAAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTGATGGGCAGACATGA

Coding sequence (CDS)

ATGGGTTCTAGAGAGCGAAAGAAAGCAGCAGCAGCACCTAATTCTTCTCATCACAACTCTAAAGAATTTCGTGCTTCCACAAGCTCTACTGCTGTGGTGAATGTGGAGAGTGTAGAGAGGGGTTTTCTAATAAATGTATTTTTGGAAAGAAATTCACCTGGATTGCTAGTTCGGATTCTAGAAGCCTTTGAAAAATTAGGACTTGGAGTCCTGGATGCCGATATATCTTGTTCCGATTGTTTCCAGCTTCAAGCTTTTGGAGAAGAGAATGAAGGAAGAAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTGATGGGCAGACATGA

Protein sequence

MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRILEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT*

Homology

[Close]

BLAST of Chy8G151950.1 vs. ExPASy TrEMBL
Match: A0A0A0L039 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329560 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MGSRERKK-AAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60
           MGSRERKK AAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120
           LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120

[Close]

BLAST of Chy8G151950.1 vs. ExPASy TrEMBL
Match: A0A1S3CLI8 (uncharacterized protein LOC103502184 OS=Cucumis melo OX=3656 GN=LOC103502184 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.3e-54
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAAA NSSHHNSKEFRASTSS+AVVNVESVERGFLINVFLERNSPGLLVRIL
Sbjct: 1   MGSRERKKAAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 119
           EAFEKLGLGVLDADISCSDCFQLQA GEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ
Sbjct: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118

[Close]

BLAST of Chy8G151950.1 vs. ExPASy TrEMBL
Match: A0A6J1IM47 (uncharacterized protein LOC111477723 OS=Cucurbita maxima OX=3661 GN=LOC111477723 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.3e-46
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA+ + +HH SKEFRASTSS+AVVNVE +ERGFLINVF ERNSPGLLVRIL
Sbjct: 1   MGSRERKKAAAS-SLNHHKSKEFRASTSSSAVVNVEDLERGFLINVFSERNSPGLLVRIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 119
           EAFEKLGL VLDAD+SCSDCFQLQA GEENEG KIIKAQVVKNAVKQAIKEWSES+GQ
Sbjct: 61  EAFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQ 117

[Close]

BLAST of Chy8G151950.1 vs. ExPASy TrEMBL
Match: A0A6J1GFJ5 (uncharacterized protein LOC111453491 OS=Cucurbita moschata OX=3662 GN=LOC111453491 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.6e-46
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA+ + +HH SKEFRASTSS+AVVNVE++ERGFLINVF ERNSPGLLV+IL
Sbjct: 1   MGSRERKKAAAS-SLNHHKSKEFRASTSSSAVVNVENLERGFLINVFSERNSPGLLVQIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 119
           EAFEKLGL VLDAD+SCSDCFQLQA GEENEG KIIKAQVVKNAVKQAIKEWSES+GQ
Sbjct: 61  EAFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQ 117

[Close]

BLAST of Chy8G151950.1 vs. ExPASy TrEMBL
Match: A0A6J1HSD7 (uncharacterized protein LOC111466169 OS=Cucurbita maxima OX=3661 GN=LOC111466169 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA+ + +H    EF ASTSS+AVVNVES+ RGFLINV++E+NSPGLLVRIL
Sbjct: 41  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYVEKNSPGLLVRIL 100

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120
           EAFEKLGL VLDA++SCSDCFQLQA GEENE  K++K QVVK AVKQAIKEWSES+GQT
Sbjct: 101 EAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKMVKPQVVKKAVKQAIKEWSESNGQT 159

[Close]

BLAST of Chy8G151950.1 vs. NCBI nr
Match: XP_004149926.1 (uncharacterized protein LOC101209807 [Cucumis sativus] >KGN54434.1 hypothetical protein Csa_012709 [Cucumis sativus])

HSP 1 Score: 221 bits (564), Expect = 1.79e-72
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MGSRERKKAAAA-PNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60
           MGSRERKKAAAA PNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 119
           LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120

[Close]

BLAST of Chy8G151950.1 vs. NCBI nr
Match: XP_008464258.1 (PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo])

HSP 1 Score: 217 bits (552), Expect = 1.17e-70
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAAA NSSHHNSKEFRASTSS+AVVNVESVERGFLINVFLERNSPGLLVRIL
Sbjct: 1   MGSRERKKAAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118
           EAFEKLGLGVLDADISCSDCFQLQA GEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ
Sbjct: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118

[Close]

BLAST of Chy8G151950.1 vs. NCBI nr
Match: XP_038882922.1 (uncharacterized protein LOC120074022 [Benincasa hispida])

HSP 1 Score: 194 bits (494), Expect = 7.44e-62
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA   SSHH SKEFRASTSS+A+VNVES+ERGFLINVFLERNSPGLLVRIL
Sbjct: 1   MGSRERKKAAA---SSHHKSKEFRASTSSSAMVNVESLERGFLINVFLERNSPGLLVRIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118
           EAFEKLGL VLDA++SCSDCFQLQA GEENEG KIIKAQVVKNAVKQAIKEWSES+GQ
Sbjct: 61  EAFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQ 115

[Close]

BLAST of Chy8G151950.1 vs. NCBI nr
Match: XP_022977370.1 (uncharacterized protein LOC111477723 [Cucurbita maxima])

HSP 1 Score: 191 bits (485), Expect = 1.87e-60
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA+ + +HH SKEFRASTSS+AVVNVE +ERGFLINVF ERNSPGLLVRIL
Sbjct: 1   MGSRERKKAAAS-SLNHHKSKEFRASTSSSAVVNVEDLERGFLINVFSERNSPGLLVRIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118
           EAFEKLGL VLDAD+SCSDCFQLQA GEENEG KIIKAQVVKNAVKQAIKEWSES+GQ
Sbjct: 61  EAFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQ 117

[Close]

BLAST of Chy8G151950.1 vs. NCBI nr
Match: XP_022950375.1 (uncharacterized protein LOC111453491 [Cucurbita moschata])

HSP 1 Score: 190 bits (482), Expect = 5.35e-60
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MGSRERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA+ + +HH SKEFRASTSS+AVVNVE++ERGFLINVF ERNSPGLLV+IL
Sbjct: 1   MGSRERKKAAAS-SLNHHKSKEFRASTSSSAVVNVENLERGFLINVFSERNSPGLLVQIL 60

Query: 61  EAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118
           EAFEKLGL VLDAD+SCSDCFQLQA GEENEG KIIKAQVVKNAVKQAIKEWSES+GQ
Sbjct: 61  EAFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQ 117

[Close]

BLAST of Chy8G151950.1 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 30  TAVVNVESVERGFLINVFLERNSPGLLVRILEAFEKLGLGVLDADISCSDCFQLQAFGEE 89
           T +V VE++++GF+INVF  +N PG+LV +LEAFE +GL VL+A  SC+D F L A G E
Sbjct: 68  TPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFSLHAMGLE 127

Query: 90  NEGRKIIKAQVVKNAVKQAIKEWSE 115
           NE  + + A+ VK AV  AI+ W E
Sbjct: 128 NEDGENMDAEAVKQAVTDAIRSWGE 152

[Close]

BLAST of Chy8G151950.1 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-17
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 4   RERKKAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRILEAF 63
           ++ K+     N++  + + FR S+    +V VE++E+GF+I V   +N  G+LV +LE F
Sbjct: 42  KKLKQKVEKINNATTSEQSFRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETF 101

Query: 64  EKLGLGVLDADISCSDCFQLQAFG-EENEGRKIIKAQVVKNAVKQAIKEWSES 116
           E LGL V++A +SC+D F L A G   N+    I A+ VK AV +AI+ WS+S
Sbjct: 102 EDLGLDVVEARVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDS 154

The following BLAST results are available for this feature:

BLAST of Chy8G151950.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G151950.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L039	3.0e-55	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329560 PE=4 SV=1	[more]
A0A1S3CLI8	7.3e-54	97.46	uncharacterized protein LOC103502184 OS=Cucumis melo OX=3656 GN=LOC103502184 PE=...	[more]
A0A6J1IM47	4.3e-46	87.29	uncharacterized protein LOC111477723 OS=Cucurbita maxima OX=3661 GN=LOC111477723...	[more]
A0A6J1GFJ5	9.6e-46	86.44	uncharacterized protein LOC111453491 OS=Cucurbita moschata OX=3662 GN=LOC1114534...	[more]
A0A6J1HSD7	3.2e-41	77.31	uncharacterized protein LOC111466169 OS=Cucurbita maxima OX=3661 GN=LOC111466169...	[more]

BLAST of Chy8G151950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149926.1	1.79e-72	99.17	uncharacterized protein LOC101209807 [Cucumis sativus] >KGN54434.1 hypothetical ...	[more]
XP_008464258.1	1.17e-70	97.46	PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo]	[more]
XP_038882922.1	7.44e-62	88.98	uncharacterized protein LOC120074022 [Benincasa hispida]	[more]
XP_022977370.1	1.87e-60	87.29	uncharacterized protein LOC111477723 [Cucurbita maxima]	[more]
XP_022950375.1	5.35e-60	86.44	uncharacterized protein LOC111453491 [Cucurbita moschata]	[more]

BLAST of Chy8G151950.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	2.0e-19	51.76	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	9.2e-17	39.82	transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..30
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 31..115
None	No IPR available	PANTHER	PTHR31945:SF45	TRANSCRIPTION FACTOR BHLH FAMILY-RELATED	coord: 31..115
None	No IPR available	CDD	cd04873	ACT_UUR-ACR-like	coord: 50..109 e-value: 0.00187938 score: 32.5201

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy8G151950	Chy8G151950	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G151950.1.exon3	Chy8G151950.1.exon3	exon
Chy8G151950.1.exon2	Chy8G151950.1.exon2	exon
Chy8G151950.1.exon1	Chy8G151950.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G151950.1.cds3	Chy8G151950.1.cds3	CDS
Chy8G151950.1.cds2	Chy8G151950.1.cds2	CDS
Chy8G151950.1.cds1	Chy8G151950.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy8G151950.1	Chy8G151950.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding